GO Enrichment Analysis of Co-expressed Genes with
AT2G45970
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 3 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 6 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 8 | GO:0006695: cholesterol biosynthetic process | 5.49E-07 |
| 9 | GO:0007017: microtubule-based process | 1.21E-05 |
| 10 | GO:0042335: cuticle development | 2.87E-05 |
| 11 | GO:0032544: plastid translation | 7.46E-05 |
| 12 | GO:0033384: geranyl diphosphate biosynthetic process | 9.24E-05 |
| 13 | GO:0045337: farnesyl diphosphate biosynthetic process | 9.24E-05 |
| 14 | GO:0043489: RNA stabilization | 1.02E-04 |
| 15 | GO:0042371: vitamin K biosynthetic process | 1.02E-04 |
| 16 | GO:0060627: regulation of vesicle-mediated transport | 1.02E-04 |
| 17 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.02E-04 |
| 18 | GO:0006633: fatty acid biosynthetic process | 1.13E-04 |
| 19 | GO:0010020: chloroplast fission | 2.37E-04 |
| 20 | GO:0071258: cellular response to gravity | 2.40E-04 |
| 21 | GO:0009658: chloroplast organization | 2.78E-04 |
| 22 | GO:0019563: glycerol catabolic process | 3.99E-04 |
| 23 | GO:2001295: malonyl-CoA biosynthetic process | 3.99E-04 |
| 24 | GO:0032504: multicellular organism reproduction | 3.99E-04 |
| 25 | GO:0010581: regulation of starch biosynthetic process | 3.99E-04 |
| 26 | GO:0006424: glutamyl-tRNA aminoacylation | 5.73E-04 |
| 27 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 5.73E-04 |
| 28 | GO:2001141: regulation of RNA biosynthetic process | 5.73E-04 |
| 29 | GO:0006241: CTP biosynthetic process | 5.73E-04 |
| 30 | GO:0006165: nucleoside diphosphate phosphorylation | 5.73E-04 |
| 31 | GO:0006228: UTP biosynthetic process | 5.73E-04 |
| 32 | GO:0010088: phloem development | 5.73E-04 |
| 33 | GO:0006085: acetyl-CoA biosynthetic process | 7.62E-04 |
| 34 | GO:0006183: GTP biosynthetic process | 7.62E-04 |
| 35 | GO:0044206: UMP salvage | 7.62E-04 |
| 36 | GO:0032502: developmental process | 8.55E-04 |
| 37 | GO:0032543: mitochondrial translation | 9.62E-04 |
| 38 | GO:0043097: pyrimidine nucleoside salvage | 9.62E-04 |
| 39 | GO:0006796: phosphate-containing compound metabolic process | 1.17E-03 |
| 40 | GO:0010190: cytochrome b6f complex assembly | 1.17E-03 |
| 41 | GO:0006206: pyrimidine nucleobase metabolic process | 1.17E-03 |
| 42 | GO:0042372: phylloquinone biosynthetic process | 1.40E-03 |
| 43 | GO:0009610: response to symbiotic fungus | 1.65E-03 |
| 44 | GO:0009690: cytokinin metabolic process | 1.90E-03 |
| 45 | GO:0007155: cell adhesion | 1.90E-03 |
| 46 | GO:0006839: mitochondrial transport | 2.11E-03 |
| 47 | GO:0019430: removal of superoxide radicals | 2.17E-03 |
| 48 | GO:0009932: cell tip growth | 2.17E-03 |
| 49 | GO:0071482: cellular response to light stimulus | 2.17E-03 |
| 50 | GO:0006783: heme biosynthetic process | 2.45E-03 |
| 51 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.58E-03 |
| 52 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.74E-03 |
| 53 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.74E-03 |
| 54 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.74E-03 |
| 55 | GO:0042538: hyperosmotic salinity response | 2.98E-03 |
| 56 | GO:0048829: root cap development | 3.05E-03 |
| 57 | GO:0006949: syncytium formation | 3.05E-03 |
| 58 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.05E-03 |
| 59 | GO:0043085: positive regulation of catalytic activity | 3.36E-03 |
| 60 | GO:0006352: DNA-templated transcription, initiation | 3.36E-03 |
| 61 | GO:0000038: very long-chain fatty acid metabolic process | 3.36E-03 |
| 62 | GO:0009773: photosynthetic electron transport in photosystem I | 3.36E-03 |
| 63 | GO:0006790: sulfur compound metabolic process | 3.69E-03 |
| 64 | GO:0009725: response to hormone | 4.02E-03 |
| 65 | GO:0006094: gluconeogenesis | 4.02E-03 |
| 66 | GO:0019253: reductive pentose-phosphate cycle | 4.37E-03 |
| 67 | GO:0046854: phosphatidylinositol phosphorylation | 4.72E-03 |
| 68 | GO:0010025: wax biosynthetic process | 5.09E-03 |
| 69 | GO:0019762: glucosinolate catabolic process | 5.09E-03 |
| 70 | GO:0009116: nucleoside metabolic process | 5.46E-03 |
| 71 | GO:0000027: ribosomal large subunit assembly | 5.46E-03 |
| 72 | GO:0007010: cytoskeleton organization | 5.46E-03 |
| 73 | GO:0008299: isoprenoid biosynthetic process | 5.85E-03 |
| 74 | GO:0006418: tRNA aminoacylation for protein translation | 5.85E-03 |
| 75 | GO:0003333: amino acid transmembrane transport | 6.24E-03 |
| 76 | GO:0006412: translation | 6.51E-03 |
| 77 | GO:0009411: response to UV | 7.06E-03 |
| 78 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 7.06E-03 |
| 79 | GO:0009735: response to cytokinin | 7.48E-03 |
| 80 | GO:0019722: calcium-mediated signaling | 7.48E-03 |
| 81 | GO:0000271: polysaccharide biosynthetic process | 8.35E-03 |
| 82 | GO:0080022: primary root development | 8.35E-03 |
| 83 | GO:0000413: protein peptidyl-prolyl isomerization | 8.35E-03 |
| 84 | GO:0048868: pollen tube development | 8.80E-03 |
| 85 | GO:0045489: pectin biosynthetic process | 8.80E-03 |
| 86 | GO:0007018: microtubule-based movement | 9.26E-03 |
| 87 | GO:0010583: response to cyclopentenone | 1.07E-02 |
| 88 | GO:0009828: plant-type cell wall loosening | 1.17E-02 |
| 89 | GO:0007267: cell-cell signaling | 1.22E-02 |
| 90 | GO:0071805: potassium ion transmembrane transport | 1.22E-02 |
| 91 | GO:0009627: systemic acquired resistance | 1.43E-02 |
| 92 | GO:0015995: chlorophyll biosynthetic process | 1.48E-02 |
| 93 | GO:0016311: dephosphorylation | 1.54E-02 |
| 94 | GO:0048481: plant ovule development | 1.60E-02 |
| 95 | GO:0009813: flavonoid biosynthetic process | 1.65E-02 |
| 96 | GO:0009631: cold acclimation | 1.77E-02 |
| 97 | GO:0045454: cell redox homeostasis | 1.80E-02 |
| 98 | GO:0006865: amino acid transport | 1.83E-02 |
| 99 | GO:0045087: innate immune response | 1.89E-02 |
| 100 | GO:0016051: carbohydrate biosynthetic process | 1.89E-02 |
| 101 | GO:0009637: response to blue light | 1.89E-02 |
| 102 | GO:0006869: lipid transport | 1.98E-02 |
| 103 | GO:0071555: cell wall organization | 2.05E-02 |
| 104 | GO:0006631: fatty acid metabolic process | 2.13E-02 |
| 105 | GO:0016042: lipid catabolic process | 2.16E-02 |
| 106 | GO:0042542: response to hydrogen peroxide | 2.20E-02 |
| 107 | GO:0006629: lipid metabolic process | 2.22E-02 |
| 108 | GO:0010114: response to red light | 2.26E-02 |
| 109 | GO:0009664: plant-type cell wall organization | 2.66E-02 |
| 110 | GO:0009585: red, far-red light phototransduction | 2.80E-02 |
| 111 | GO:0006813: potassium ion transport | 2.80E-02 |
| 112 | GO:0009409: response to cold | 2.99E-02 |
| 113 | GO:0009651: response to salt stress | 3.02E-02 |
| 114 | GO:0009734: auxin-activated signaling pathway | 3.13E-02 |
| 115 | GO:0006096: glycolytic process | 3.15E-02 |
| 116 | GO:0006810: transport | 3.31E-02 |
| 117 | GO:0046686: response to cadmium ion | 3.56E-02 |
| 118 | GO:0006396: RNA processing | 3.67E-02 |
| 119 | GO:0042744: hydrogen peroxide catabolic process | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 4 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 5 | GO:0019843: rRNA binding | 4.19E-06 |
| 6 | GO:0005200: structural constituent of cytoskeleton | 6.72E-05 |
| 7 | GO:0004337: geranyltranstransferase activity | 9.24E-05 |
| 8 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.02E-04 |
| 9 | GO:0004807: triose-phosphate isomerase activity | 1.02E-04 |
| 10 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.02E-04 |
| 11 | GO:0004655: porphobilinogen synthase activity | 1.02E-04 |
| 12 | GO:0004161: dimethylallyltranstransferase activity | 1.56E-04 |
| 13 | GO:0008266: poly(U) RNA binding | 2.37E-04 |
| 14 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.40E-04 |
| 15 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 2.40E-04 |
| 16 | GO:0005504: fatty acid binding | 3.99E-04 |
| 17 | GO:0004075: biotin carboxylase activity | 3.99E-04 |
| 18 | GO:0030267: glyoxylate reductase (NADP) activity | 3.99E-04 |
| 19 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 3.99E-04 |
| 20 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 3.99E-04 |
| 21 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 3.99E-04 |
| 22 | GO:0002161: aminoacyl-tRNA editing activity | 3.99E-04 |
| 23 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.99E-04 |
| 24 | GO:0004550: nucleoside diphosphate kinase activity | 5.73E-04 |
| 25 | GO:0003878: ATP citrate synthase activity | 5.73E-04 |
| 26 | GO:0045430: chalcone isomerase activity | 7.62E-04 |
| 27 | GO:0001053: plastid sigma factor activity | 7.62E-04 |
| 28 | GO:0004845: uracil phosphoribosyltransferase activity | 7.62E-04 |
| 29 | GO:0016836: hydro-lyase activity | 7.62E-04 |
| 30 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 7.62E-04 |
| 31 | GO:0016987: sigma factor activity | 7.62E-04 |
| 32 | GO:0010328: auxin influx transmembrane transporter activity | 7.62E-04 |
| 33 | GO:0003989: acetyl-CoA carboxylase activity | 9.62E-04 |
| 34 | GO:0009922: fatty acid elongase activity | 9.62E-04 |
| 35 | GO:0003735: structural constituent of ribosome | 9.80E-04 |
| 36 | GO:0016208: AMP binding | 1.17E-03 |
| 37 | GO:0016462: pyrophosphatase activity | 1.17E-03 |
| 38 | GO:0004849: uridine kinase activity | 1.40E-03 |
| 39 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.40E-03 |
| 40 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.40E-03 |
| 41 | GO:0051920: peroxiredoxin activity | 1.40E-03 |
| 42 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.40E-03 |
| 43 | GO:0004427: inorganic diphosphatase activity | 1.65E-03 |
| 44 | GO:0016209: antioxidant activity | 1.90E-03 |
| 45 | GO:0016788: hydrolase activity, acting on ester bonds | 1.93E-03 |
| 46 | GO:0047617: acyl-CoA hydrolase activity | 2.74E-03 |
| 47 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.77E-03 |
| 48 | GO:0052689: carboxylic ester hydrolase activity | 2.80E-03 |
| 49 | GO:0008047: enzyme activator activity | 3.05E-03 |
| 50 | GO:0005525: GTP binding | 3.58E-03 |
| 51 | GO:0000049: tRNA binding | 3.69E-03 |
| 52 | GO:0003924: GTPase activity | 4.05E-03 |
| 53 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 5.09E-03 |
| 54 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 5.09E-03 |
| 55 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 5.09E-03 |
| 56 | GO:0015079: potassium ion transmembrane transporter activity | 5.85E-03 |
| 57 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 6.24E-03 |
| 58 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 6.64E-03 |
| 59 | GO:0004812: aminoacyl-tRNA ligase activity | 7.91E-03 |
| 60 | GO:0008017: microtubule binding | 8.17E-03 |
| 61 | GO:0050662: coenzyme binding | 9.26E-03 |
| 62 | GO:0004791: thioredoxin-disulfide reductase activity | 9.26E-03 |
| 63 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.12E-02 |
| 64 | GO:0046872: metal ion binding | 1.16E-02 |
| 65 | GO:0005524: ATP binding | 1.19E-02 |
| 66 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.22E-02 |
| 67 | GO:0102483: scopolin beta-glucosidase activity | 1.48E-02 |
| 68 | GO:0008236: serine-type peptidase activity | 1.54E-02 |
| 69 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.54E-02 |
| 70 | GO:0042803: protein homodimerization activity | 1.89E-02 |
| 71 | GO:0003993: acid phosphatase activity | 1.95E-02 |
| 72 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.95E-02 |
| 73 | GO:0008422: beta-glucosidase activity | 2.01E-02 |
| 74 | GO:0009055: electron carrier activity | 2.38E-02 |
| 75 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.39E-02 |
| 76 | GO:0043621: protein self-association | 2.39E-02 |
| 77 | GO:0015293: symporter activity | 2.46E-02 |
| 78 | GO:0005198: structural molecule activity | 2.46E-02 |
| 79 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.80E-02 |
| 80 | GO:0003777: microtubule motor activity | 3.01E-02 |
| 81 | GO:0015171: amino acid transmembrane transporter activity | 3.01E-02 |
| 82 | GO:0008289: lipid binding | 3.09E-02 |
| 83 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.22E-02 |
| 84 | GO:0004672: protein kinase activity | 3.31E-02 |
| 85 | GO:0016758: transferase activity, transferring hexosyl groups | 4.14E-02 |
| 86 | GO:0016740: transferase activity | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009570: chloroplast stroma | 5.26E-19 |
| 2 | GO:0009941: chloroplast envelope | 3.81E-12 |
| 3 | GO:0009507: chloroplast | 3.25E-11 |
| 4 | GO:0009579: thylakoid | 3.67E-08 |
| 5 | GO:0045298: tubulin complex | 1.16E-06 |
| 6 | GO:0046658: anchored component of plasma membrane | 1.87E-05 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 6.23E-05 |
| 8 | GO:0009505: plant-type cell wall | 7.08E-05 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 7.44E-05 |
| 10 | GO:0009547: plastid ribosome | 1.02E-04 |
| 11 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.02E-04 |
| 12 | GO:0031225: anchored component of membrane | 1.33E-04 |
| 13 | GO:0000311: plastid large ribosomal subunit | 1.82E-04 |
| 14 | GO:0016020: membrane | 1.99E-04 |
| 15 | GO:0031977: thylakoid lumen | 2.12E-04 |
| 16 | GO:0000312: plastid small ribosomal subunit | 2.37E-04 |
| 17 | GO:0005874: microtubule | 3.72E-04 |
| 18 | GO:0009534: chloroplast thylakoid | 4.56E-04 |
| 19 | GO:0009346: citrate lyase complex | 5.73E-04 |
| 20 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.45E-03 |
| 21 | GO:0048046: apoplast | 3.22E-03 |
| 22 | GO:0005618: cell wall | 3.81E-03 |
| 23 | GO:0030659: cytoplasmic vesicle membrane | 4.37E-03 |
| 24 | GO:0005875: microtubule associated complex | 5.09E-03 |
| 25 | GO:0042651: thylakoid membrane | 5.85E-03 |
| 26 | GO:0009532: plastid stroma | 6.24E-03 |
| 27 | GO:0009536: plastid | 6.69E-03 |
| 28 | GO:0005871: kinesin complex | 7.91E-03 |
| 29 | GO:0022626: cytosolic ribosome | 7.92E-03 |
| 30 | GO:0005886: plasma membrane | 8.12E-03 |
| 31 | GO:0022627: cytosolic small ribosomal subunit | 1.03E-02 |
| 32 | GO:0005778: peroxisomal membrane | 1.22E-02 |
| 33 | GO:0010319: stromule | 1.22E-02 |
| 34 | GO:0009295: nucleoid | 1.22E-02 |
| 35 | GO:0030529: intracellular ribonucleoprotein complex | 1.32E-02 |
| 36 | GO:0031969: chloroplast membrane | 1.50E-02 |
| 37 | GO:0009506: plasmodesma | 1.51E-02 |
| 38 | GO:0022625: cytosolic large ribosomal subunit | 1.58E-02 |
| 39 | GO:0000325: plant-type vacuole | 1.77E-02 |
| 40 | GO:0005576: extracellular region | 1.87E-02 |
| 41 | GO:0005743: mitochondrial inner membrane | 2.07E-02 |
| 42 | GO:0005840: ribosome | 2.17E-02 |
| 43 | GO:0005774: vacuolar membrane | 3.16E-02 |
| 44 | GO:0009706: chloroplast inner membrane | 3.59E-02 |
| 45 | GO:0005829: cytosol | 3.88E-02 |
| 46 | GO:0005777: peroxisome | 4.51E-02 |