GO Enrichment Analysis of Co-expressed Genes with
AT2G45770
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0048564: photosystem I assembly | 1.84E-05 |
| 4 | GO:0015995: chlorophyll biosynthetic process | 2.27E-05 |
| 5 | GO:0000373: Group II intron splicing | 2.98E-05 |
| 6 | GO:0034337: RNA folding | 4.88E-05 |
| 7 | GO:0045717: negative regulation of fatty acid biosynthetic process | 1.20E-04 |
| 8 | GO:0018026: peptidyl-lysine monomethylation | 1.20E-04 |
| 9 | GO:0006568: tryptophan metabolic process | 1.20E-04 |
| 10 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.20E-04 |
| 11 | GO:2001141: regulation of RNA biosynthetic process | 3.01E-04 |
| 12 | GO:0010371: regulation of gibberellin biosynthetic process | 3.01E-04 |
| 13 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.01E-04 |
| 14 | GO:0010021: amylopectin biosynthetic process | 4.04E-04 |
| 15 | GO:0006564: L-serine biosynthetic process | 5.13E-04 |
| 16 | GO:0048497: maintenance of floral organ identity | 5.13E-04 |
| 17 | GO:0042793: transcription from plastid promoter | 6.29E-04 |
| 18 | GO:0003006: developmental process involved in reproduction | 6.29E-04 |
| 19 | GO:0000470: maturation of LSU-rRNA | 6.29E-04 |
| 20 | GO:0009913: epidermal cell differentiation | 6.29E-04 |
| 21 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.50E-04 |
| 22 | GO:1901259: chloroplast rRNA processing | 7.50E-04 |
| 23 | GO:0006400: tRNA modification | 8.75E-04 |
| 24 | GO:0045292: mRNA cis splicing, via spliceosome | 1.01E-03 |
| 25 | GO:0005978: glycogen biosynthetic process | 1.01E-03 |
| 26 | GO:0071482: cellular response to light stimulus | 1.14E-03 |
| 27 | GO:0005982: starch metabolic process | 1.43E-03 |
| 28 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.43E-03 |
| 29 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.43E-03 |
| 30 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.59E-03 |
| 31 | GO:0006352: DNA-templated transcription, initiation | 1.75E-03 |
| 32 | GO:0009773: photosynthetic electron transport in photosystem I | 1.75E-03 |
| 33 | GO:0008285: negative regulation of cell proliferation | 1.75E-03 |
| 34 | GO:0010628: positive regulation of gene expression | 2.08E-03 |
| 35 | GO:0010020: chloroplast fission | 2.26E-03 |
| 36 | GO:0010025: wax biosynthetic process | 2.62E-03 |
| 37 | GO:0010073: meristem maintenance | 3.01E-03 |
| 38 | GO:0009451: RNA modification | 3.03E-03 |
| 39 | GO:0071369: cellular response to ethylene stimulus | 3.61E-03 |
| 40 | GO:0040007: growth | 3.61E-03 |
| 41 | GO:0010227: floral organ abscission | 3.61E-03 |
| 42 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 3.61E-03 |
| 43 | GO:0080022: primary root development | 4.26E-03 |
| 44 | GO:0000413: protein peptidyl-prolyl isomerization | 4.26E-03 |
| 45 | GO:0009958: positive gravitropism | 4.48E-03 |
| 46 | GO:0009658: chloroplast organization | 4.55E-03 |
| 47 | GO:0048825: cotyledon development | 4.94E-03 |
| 48 | GO:0019252: starch biosynthetic process | 4.94E-03 |
| 49 | GO:0016032: viral process | 5.42E-03 |
| 50 | GO:0009828: plant-type cell wall loosening | 5.91E-03 |
| 51 | GO:0015979: photosynthesis | 6.43E-03 |
| 52 | GO:0010027: thylakoid membrane organization | 6.67E-03 |
| 53 | GO:0010311: lateral root formation | 8.31E-03 |
| 54 | GO:0009637: response to blue light | 9.47E-03 |
| 55 | GO:0010114: response to red light | 1.13E-02 |
| 56 | GO:0009640: photomorphogenesis | 1.13E-02 |
| 57 | GO:0009664: plant-type cell wall organization | 1.33E-02 |
| 58 | GO:0006364: rRNA processing | 1.40E-02 |
| 59 | GO:0048316: seed development | 1.61E-02 |
| 60 | GO:0009845: seed germination | 2.23E-02 |
| 61 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.73E-02 |
| 62 | GO:0007166: cell surface receptor signaling pathway | 2.91E-02 |
| 63 | GO:0009826: unidimensional cell growth | 3.52E-02 |
| 64 | GO:0042254: ribosome biogenesis | 3.66E-02 |
| 65 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.31E-02 |
| 66 | GO:0005975: carbohydrate metabolic process | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 4.88E-05 |
| 2 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 4.88E-05 |
| 3 | GO:0016630: protochlorophyllide reductase activity | 1.20E-04 |
| 4 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.20E-04 |
| 5 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 1.20E-04 |
| 6 | GO:0004751: ribose-5-phosphate isomerase activity | 2.06E-04 |
| 7 | GO:0043169: cation binding | 2.06E-04 |
| 8 | GO:0019843: rRNA binding | 2.07E-04 |
| 9 | GO:0016851: magnesium chelatase activity | 3.01E-04 |
| 10 | GO:0016279: protein-lysine N-methyltransferase activity | 4.04E-04 |
| 11 | GO:0001053: plastid sigma factor activity | 4.04E-04 |
| 12 | GO:0016987: sigma factor activity | 4.04E-04 |
| 13 | GO:0003959: NADPH dehydrogenase activity | 5.13E-04 |
| 14 | GO:0043022: ribosome binding | 1.01E-03 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.07E-03 |
| 16 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 1.59E-03 |
| 17 | GO:0008081: phosphoric diester hydrolase activity | 2.08E-03 |
| 18 | GO:0005528: FK506 binding | 2.81E-03 |
| 19 | GO:0043424: protein histidine kinase binding | 3.01E-03 |
| 20 | GO:0016787: hydrolase activity | 3.48E-03 |
| 21 | GO:0005525: GTP binding | 4.52E-03 |
| 22 | GO:0008483: transaminase activity | 6.16E-03 |
| 23 | GO:0016597: amino acid binding | 6.42E-03 |
| 24 | GO:0003723: RNA binding | 7.18E-03 |
| 25 | GO:0004519: endonuclease activity | 9.04E-03 |
| 26 | GO:0003746: translation elongation factor activity | 9.47E-03 |
| 27 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.04E-02 |
| 28 | GO:0051287: NAD binding | 1.30E-02 |
| 29 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.40E-02 |
| 30 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.61E-02 |
| 31 | GO:0016740: transferase activity | 1.81E-02 |
| 32 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.95E-02 |
| 33 | GO:0030246: carbohydrate binding | 1.99E-02 |
| 34 | GO:0030170: pyridoxal phosphate binding | 2.27E-02 |
| 35 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.52E-02 |
| 36 | GO:0008017: microtubule binding | 2.73E-02 |
| 37 | GO:0005509: calcium ion binding | 2.77E-02 |
| 38 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.14E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.15E-17 |
| 2 | GO:0009570: chloroplast stroma | 1.29E-06 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.05E-05 |
| 4 | GO:0009941: chloroplast envelope | 2.60E-05 |
| 5 | GO:0031977: thylakoid lumen | 5.11E-05 |
| 6 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.20E-04 |
| 7 | GO:0010007: magnesium chelatase complex | 2.06E-04 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.07E-04 |
| 9 | GO:0009534: chloroplast thylakoid | 5.06E-04 |
| 10 | GO:0009533: chloroplast stromal thylakoid | 8.75E-04 |
| 11 | GO:0009501: amyloplast | 1.01E-03 |
| 12 | GO:0055028: cortical microtubule | 1.59E-03 |
| 13 | GO:0032040: small-subunit processome | 1.91E-03 |
| 14 | GO:0009508: plastid chromosome | 2.08E-03 |
| 15 | GO:0005578: proteinaceous extracellular matrix | 2.08E-03 |
| 16 | GO:0000312: plastid small ribosomal subunit | 2.26E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 2.26E-03 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 3.01E-03 |
| 19 | GO:0019898: extrinsic component of membrane | 4.94E-03 |
| 20 | GO:0031969: chloroplast membrane | 5.63E-03 |
| 21 | GO:0009295: nucleoid | 6.16E-03 |
| 22 | GO:0005840: ribosome | 6.24E-03 |
| 23 | GO:0043231: intracellular membrane-bounded organelle | 9.16E-03 |
| 24 | GO:0009579: thylakoid | 1.77E-02 |
| 25 | GO:0009706: chloroplast inner membrane | 1.79E-02 |
| 26 | GO:0005802: trans-Golgi network | 2.37E-02 |
| 27 | GO:0005768: endosome | 2.70E-02 |
| 28 | GO:0046658: anchored component of plasma membrane | 3.23E-02 |
| 29 | GO:0022627: cytosolic small ribosomal subunit | 3.23E-02 |
| 30 | GO:0005618: cell wall | 3.35E-02 |
| 31 | GO:0005874: microtubule | 4.11E-02 |
| 32 | GO:0022625: cytosolic large ribosomal subunit | 4.36E-02 |