co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G45340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	5.96E-08
4	GO:0090391: granum assembly	3.53E-06
5	GO:0010196: nonphotochemical quenching	7.18E-05
6	GO:0000481: maturation of 5S rRNA	1.37E-04
7	GO:0033481: galacturonate biosynthetic process	1.37E-04
8	GO:0034337: RNA folding	1.37E-04
9	GO:0005991: trehalose metabolic process	1.37E-04
10	GO:0071588: hydrogen peroxide mediated signaling pathway	1.37E-04
11	GO:0015979: photosynthesis	1.41E-04
12	GO:0010205: photoinhibition	1.73E-04
13	GO:0048829: root cap development	2.04E-04
14	GO:0018298: protein-chromophore linkage	2.09E-04
15	GO:0001736: establishment of planar polarity	3.16E-04
16	GO:0010024: phytochromobilin biosynthetic process	3.16E-04
17	GO:0043255: regulation of carbohydrate biosynthetic process	3.16E-04
18	GO:0010115: regulation of abscisic acid biosynthetic process	3.16E-04
19	GO:0010167: response to nitrate	3.99E-04
20	GO:0006636: unsaturated fatty acid biosynthetic process	4.45E-04
21	GO:0015714: phosphoenolpyruvate transport	5.20E-04
22	GO:0006788: heme oxidation	5.20E-04
23	GO:0006518: peptide metabolic process	5.20E-04
24	GO:0009768: photosynthesis, light harvesting in photosystem I	5.43E-04
25	GO:0016998: cell wall macromolecule catabolic process	5.96E-04
26	GO:0031408: oxylipin biosynthetic process	5.96E-04
27	GO:0003333: amino acid transmembrane transport	5.96E-04
28	GO:0006857: oligopeptide transport	6.43E-04
29	GO:0010371: regulation of gibberellin biosynthetic process	7.44E-04
30	GO:0009152: purine ribonucleotide biosynthetic process	7.44E-04
31	GO:0046653: tetrahydrofolate metabolic process	7.44E-04
32	GO:1901332: negative regulation of lateral root development	7.44E-04
33	GO:0042335: cuticle development	8.93E-04
34	GO:0010182: sugar mediated signaling pathway	9.59E-04
35	GO:0010021: amylopectin biosynthetic process	9.85E-04
36	GO:0045727: positive regulation of translation	9.85E-04
37	GO:0015994: chlorophyll metabolic process	9.85E-04
38	GO:0015713: phosphoglycerate transport	9.85E-04
39	GO:0016042: lipid catabolic process	1.25E-03
40	GO:0006564: L-serine biosynthetic process	1.25E-03
41	GO:0010236: plastoquinone biosynthetic process	1.25E-03
42	GO:0006561: proline biosynthetic process	1.53E-03
43	GO:0048759: xylem vessel member cell differentiation	1.53E-03
44	GO:0042549: photosystem II stabilization	1.53E-03
45	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.53E-03
46	GO:0000470: maturation of LSU-rRNA	1.53E-03
47	GO:0009913: epidermal cell differentiation	1.53E-03
48	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.53E-03
49	GO:0010337: regulation of salicylic acid metabolic process	1.53E-03
50	GO:0006596: polyamine biosynthetic process	1.53E-03
51	GO:0006633: fatty acid biosynthetic process	1.60E-03
52	GO:0010027: thylakoid membrane organization	1.68E-03
53	GO:0010189: vitamin E biosynthetic process	1.83E-03
54	GO:0010019: chloroplast-nucleus signaling pathway	1.83E-03
55	GO:0009395: phospholipid catabolic process	2.15E-03
56	GO:0009772: photosynthetic electron transport in photosystem II	2.15E-03
57	GO:0050829: defense response to Gram-negative bacterium	2.15E-03
58	GO:1900057: positive regulation of leaf senescence	2.15E-03
59	GO:0009645: response to low light intensity stimulus	2.15E-03
60	GO:0006400: tRNA modification	2.15E-03
61	GO:0030244: cellulose biosynthetic process	2.18E-03
62	GO:0009734: auxin-activated signaling pathway	2.19E-03
63	GO:0010311: lateral root formation	2.29E-03
64	GO:0031540: regulation of anthocyanin biosynthetic process	2.49E-03
65	GO:0055075: potassium ion homeostasis	2.49E-03
66	GO:0048564: photosystem I assembly	2.49E-03
67	GO:0008610: lipid biosynthetic process	2.49E-03
68	GO:0030091: protein repair	2.49E-03
69	GO:0070413: trehalose metabolism in response to stress	2.49E-03
70	GO:0032508: DNA duplex unwinding	2.49E-03
71	GO:0006865: amino acid transport	2.63E-03
72	GO:0009735: response to cytokinin	2.72E-03
73	GO:0009827: plant-type cell wall modification	2.85E-03
74	GO:0032544: plastid translation	2.85E-03
75	GO:0009658: chloroplast organization	3.14E-03
76	GO:0000373: Group II intron splicing	3.22E-03
77	GO:0034765: regulation of ion transmembrane transport	3.22E-03
78	GO:0009926: auxin polar transport	3.54E-03
79	GO:0009644: response to high light intensity	3.82E-03
80	GO:0009409: response to cold	3.91E-03
81	GO:0009688: abscisic acid biosynthetic process	4.00E-03
82	GO:0006032: chitin catabolic process	4.00E-03
83	GO:0055114: oxidation-reduction process	4.38E-03
84	GO:0009750: response to fructose	4.42E-03
85	GO:0048765: root hair cell differentiation	4.42E-03
86	GO:0000038: very long-chain fatty acid metabolic process	4.42E-03
87	GO:0008285: negative regulation of cell proliferation	4.42E-03
88	GO:0016024: CDP-diacylglycerol biosynthetic process	4.85E-03
89	GO:0015706: nitrate transport	4.85E-03
90	GO:0010229: inflorescence development	5.30E-03
91	GO:0009718: anthocyanin-containing compound biosynthetic process	5.30E-03
92	GO:0010628: positive regulation of gene expression	5.30E-03
93	GO:0006006: glucose metabolic process	5.30E-03
94	GO:0006096: glycolytic process	5.62E-03
95	GO:0048467: gynoecium development	5.76E-03
96	GO:0010143: cutin biosynthetic process	5.76E-03
97	GO:0019253: reductive pentose-phosphate cycle	5.76E-03
98	GO:0010053: root epidermal cell differentiation	6.23E-03
99	GO:0009225: nucleotide-sugar metabolic process	6.23E-03
100	GO:0009825: multidimensional cell growth	6.23E-03
101	GO:0071732: cellular response to nitric oxide	6.23E-03
102	GO:0032259: methylation	6.39E-03
103	GO:0006833: water transport	6.71E-03
104	GO:0042023: DNA endoreduplication	6.71E-03
105	GO:0009624: response to nematode	6.76E-03
106	GO:0005992: trehalose biosynthetic process	7.22E-03
107	GO:0006487: protein N-linked glycosylation	7.22E-03
108	GO:0010073: meristem maintenance	7.73E-03
109	GO:0008299: isoprenoid biosynthetic process	7.73E-03
110	GO:0007017: microtubule-based process	7.73E-03
111	GO:0009695: jasmonic acid biosynthetic process	7.73E-03
112	GO:0030245: cellulose catabolic process	8.79E-03
113	GO:0071555: cell wall organization	9.08E-03
114	GO:0071369: cellular response to ethylene stimulus	9.35E-03
115	GO:0010227: floral organ abscission	9.35E-03
116	GO:0042744: hydrogen peroxide catabolic process	9.64E-03
117	GO:0034220: ion transmembrane transport	1.11E-02
118	GO:0010087: phloem or xylem histogenesis	1.11E-02
119	GO:0042391: regulation of membrane potential	1.11E-02
120	GO:0045489: pectin biosynthetic process	1.17E-02
121	GO:0009958: positive gravitropism	1.17E-02
122	GO:0007623: circadian rhythm	1.17E-02
123	GO:0015986: ATP synthesis coupled proton transport	1.23E-02
124	GO:0019252: starch biosynthetic process	1.29E-02
125	GO:0000302: response to reactive oxygen species	1.36E-02
126	GO:0009416: response to light stimulus	1.40E-02
127	GO:0071281: cellular response to iron ion	1.49E-02
128	GO:0010252: auxin homeostasis	1.55E-02
129	GO:0071805: potassium ion transmembrane transport	1.62E-02
130	GO:0006810: transport	1.62E-02
131	GO:0045893: positive regulation of transcription, DNA-templated	1.67E-02
132	GO:0016126: sterol biosynthetic process	1.76E-02
133	GO:0055085: transmembrane transport	1.89E-02
134	GO:0042128: nitrate assimilation	1.90E-02
135	GO:0015995: chlorophyll biosynthetic process	1.98E-02
136	GO:0010411: xyloglucan metabolic process	1.98E-02
137	GO:0009832: plant-type cell wall biogenesis	2.20E-02
138	GO:0080167: response to karrikin	2.25E-02
139	GO:0010218: response to far red light	2.28E-02
140	GO:0009834: plant-type secondary cell wall biogenesis	2.28E-02
141	GO:0009631: cold acclimation	2.36E-02
142	GO:0009637: response to blue light	2.51E-02
143	GO:0009853: photorespiration	2.51E-02
144	GO:0034599: cellular response to oxidative stress	2.60E-02
145	GO:0006869: lipid transport	2.96E-02
146	GO:0010114: response to red light	3.01E-02
147	GO:0008283: cell proliferation	3.01E-02
148	GO:0009640: photomorphogenesis	3.01E-02
149	GO:0042546: cell wall biogenesis	3.10E-02
150	GO:0009408: response to heat	3.32E-02
151	GO:0009809: lignin biosynthetic process	3.72E-02
152	GO:0006364: rRNA processing	3.72E-02
153	GO:0009733: response to auxin	3.91E-02
154	GO:0018105: peptidyl-serine phosphorylation	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0010487: thermospermine synthase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0016788: hydrolase activity, acting on ester bonds	5.67E-06
8	GO:0052689: carboxylic ester hydrolase activity	1.32E-05
9	GO:0010328: auxin influx transmembrane transporter activity	1.55E-05
10	GO:0015293: symporter activity	3.77E-05
11	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.37E-04
12	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.37E-04
13	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.37E-04
14	GO:0045485: omega-6 fatty acid desaturase activity	1.37E-04
15	GO:0004321: fatty-acyl-CoA synthase activity	1.37E-04
16	GO:0016768: spermine synthase activity	1.37E-04
17	GO:0016168: chlorophyll binding	1.56E-04
18	GO:0047746: chlorophyllase activity	3.16E-04
19	GO:0004617: phosphoglycerate dehydrogenase activity	3.16E-04
20	GO:0033201: alpha-1,4-glucan synthase activity	3.16E-04
21	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.16E-04
22	GO:0031409: pigment binding	4.45E-04
23	GO:0005528: FK506 binding	4.93E-04
24	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	5.20E-04
25	GO:0070402: NADPH binding	5.20E-04
26	GO:0008864: formyltetrahydrofolate deformylase activity	5.20E-04
27	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.20E-04
28	GO:0004373: glycogen (starch) synthase activity	5.20E-04
29	GO:0005215: transporter activity	6.91E-04
30	GO:0001872: (1->3)-beta-D-glucan binding	7.44E-04
31	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	7.44E-04
32	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	7.44E-04
33	GO:0015120: phosphoglycerate transmembrane transporter activity	9.85E-04
34	GO:0010011: auxin binding	9.85E-04
35	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	9.85E-04
36	GO:0052793: pectin acetylesterase activity	9.85E-04
37	GO:0004506: squalene monooxygenase activity	9.85E-04
38	GO:0009011: starch synthase activity	9.85E-04
39	GO:0050378: UDP-glucuronate 4-epimerase activity	9.85E-04
40	GO:0004392: heme oxygenase (decyclizing) activity	9.85E-04
41	GO:0016791: phosphatase activity	1.41E-03
42	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.53E-03
43	GO:0004130: cytochrome-c peroxidase activity	1.53E-03
44	GO:0035673: oligopeptide transmembrane transporter activity	1.53E-03
45	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.53E-03
46	GO:0016688: L-ascorbate peroxidase activity	1.53E-03
47	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.83E-03
48	GO:0005242: inward rectifier potassium channel activity	1.83E-03
49	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.83E-03
50	GO:0030247: polysaccharide binding	1.97E-03
51	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.85E-03
52	GO:0008168: methyltransferase activity	2.99E-03
53	GO:0016207: 4-coumarate-CoA ligase activity	3.22E-03
54	GO:0015112: nitrate transmembrane transporter activity	3.60E-03
55	GO:0004568: chitinase activity	4.00E-03
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.12E-03
57	GO:0051287: NAD binding	4.27E-03
58	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.75E-03
59	GO:0015198: oligopeptide transporter activity	4.85E-03
60	GO:0015171: amino acid transmembrane transporter activity	5.26E-03
61	GO:0004565: beta-galactosidase activity	5.30E-03
62	GO:0004022: alcohol dehydrogenase (NAD) activity	5.30E-03
63	GO:0008266: poly(U) RNA binding	5.76E-03
64	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.71E-03
65	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.71E-03
66	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.71E-03
67	GO:0016746: transferase activity, transferring acyl groups	6.96E-03
68	GO:0004176: ATP-dependent peptidase activity	8.26E-03
69	GO:0019843: rRNA binding	8.46E-03
70	GO:0022891: substrate-specific transmembrane transporter activity	9.35E-03
71	GO:0008810: cellulase activity	9.35E-03
72	GO:0005249: voltage-gated potassium channel activity	1.11E-02
73	GO:0030551: cyclic nucleotide binding	1.11E-02
74	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.17E-02
75	GO:0016853: isomerase activity	1.23E-02
76	GO:0050662: coenzyme binding	1.23E-02
77	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.36E-02
78	GO:0016491: oxidoreductase activity	1.38E-02
79	GO:0042802: identical protein binding	1.49E-02
80	GO:0005200: structural constituent of cytoskeleton	1.62E-02
81	GO:0016413: O-acetyltransferase activity	1.69E-02
82	GO:0016597: amino acid binding	1.69E-02
83	GO:0015250: water channel activity	1.76E-02
84	GO:0008375: acetylglucosaminyltransferase activity	1.90E-02
85	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.90E-02
86	GO:0004683: calmodulin-dependent protein kinase activity	1.98E-02
87	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.98E-02
88	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.05E-02
89	GO:0004222: metalloendopeptidase activity	2.28E-02
90	GO:0030145: manganese ion binding	2.36E-02
91	GO:0003746: translation elongation factor activity	2.51E-02
92	GO:0003993: acid phosphatase activity	2.60E-02
93	GO:0050661: NADP binding	2.76E-02
94	GO:0051539: 4 iron, 4 sulfur cluster binding	2.76E-02
95	GO:0016787: hydrolase activity	2.84E-02
96	GO:0003824: catalytic activity	3.81E-02
97	GO:0003690: double-stranded DNA binding	3.82E-02
98	GO:0016874: ligase activity	4.58E-02
99	GO:0022857: transmembrane transporter activity	4.58E-02
100	GO:0008289: lipid binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	8.14E-15
4	GO:0009535: chloroplast thylakoid membrane	6.36E-11
5	GO:0009941: chloroplast envelope	1.00E-09
6	GO:0009534: chloroplast thylakoid	1.58E-08
7	GO:0009579: thylakoid	2.17E-07
8	GO:0009570: chloroplast stroma	3.57E-06
9	GO:0009782: photosystem I antenna complex	1.37E-04
10	GO:0010287: plastoglobule	1.39E-04
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.44E-04
12	GO:0009543: chloroplast thylakoid lumen	1.53E-04
13	GO:0016020: membrane	2.00E-04
14	GO:0030076: light-harvesting complex	3.99E-04
15	GO:0015630: microtubule cytoskeleton	7.44E-04
16	GO:0009706: chloroplast inner membrane	9.14E-04
17	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.53E-03
18	GO:0009986: cell surface	2.15E-03
19	GO:0048046: apoplast	2.28E-03
20	GO:0016021: integral component of membrane	2.43E-03
21	GO:0009501: amyloplast	2.49E-03
22	GO:0046658: anchored component of plasma membrane	2.57E-03
23	GO:0008180: COP9 signalosome	3.22E-03
24	GO:0031977: thylakoid lumen	3.26E-03
25	GO:0031969: chloroplast membrane	4.12E-03
26	GO:0032040: small-subunit processome	4.85E-03
27	GO:0005886: plasma membrane	4.86E-03
28	GO:0030095: chloroplast photosystem II	5.76E-03
29	GO:0031225: anchored component of membrane	6.12E-03
30	GO:0009654: photosystem II oxygen evolving complex	7.73E-03
31	GO:0005618: cell wall	8.49E-03
32	GO:0005887: integral component of plasma membrane	9.96E-03
33	GO:0009522: photosystem I	1.23E-02
34	GO:0009523: photosystem II	1.29E-02
35	GO:0019898: extrinsic component of membrane	1.29E-02
36	GO:0032580: Golgi cisterna membrane	1.55E-02
37	GO:0010319: stromule	1.62E-02
38	GO:0030529: intracellular ribonucleoprotein complex	1.76E-02
39	GO:0019005: SCF ubiquitin ligase complex	2.12E-02
40	GO:0005768: endosome	2.98E-02
41	GO:0000502: proteasome complex	3.72E-02