co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G44920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0007172: signal complex assembly	0.00E+00
5	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
6	GO:0090627: plant epidermal cell differentiation	0.00E+00
7	GO:0032928: regulation of superoxide anion generation	0.00E+00
8	GO:1904526: regulation of microtubule binding	0.00E+00
9	GO:0015995: chlorophyll biosynthetic process	6.21E-11
10	GO:0006782: protoporphyrinogen IX biosynthetic process	3.59E-08
11	GO:0015979: photosynthesis	8.11E-07
12	GO:0016122: xanthophyll metabolic process	8.68E-07
13	GO:0006783: heme biosynthetic process	2.13E-06
14	GO:0010218: response to far red light	1.18E-05
15	GO:0009640: photomorphogenesis	2.65E-05
16	GO:0031338: regulation of vesicle fusion	1.31E-04
17	GO:0033206: meiotic cytokinesis	1.31E-04
18	GO:0043007: maintenance of rDNA	1.31E-04
19	GO:0010028: xanthophyll cycle	1.31E-04
20	GO:0006824: cobalt ion transport	1.31E-04
21	GO:0000476: maturation of 4.5S rRNA	1.31E-04
22	GO:0000967: rRNA 5'-end processing	1.31E-04
23	GO:0015671: oxygen transport	1.31E-04
24	GO:0010206: photosystem II repair	1.34E-04
25	GO:0006779: porphyrin-containing compound biosynthetic process	1.62E-04
26	GO:0009637: response to blue light	2.66E-04
27	GO:0034470: ncRNA processing	3.03E-04
28	GO:0034755: iron ion transmembrane transport	3.03E-04
29	GO:0035304: regulation of protein dephosphorylation	3.03E-04
30	GO:0010541: acropetal auxin transport	3.03E-04
31	GO:0006432: phenylalanyl-tRNA aminoacylation	3.03E-04
32	GO:0018026: peptidyl-lysine monomethylation	3.03E-04
33	GO:0010207: photosystem II assembly	3.34E-04
34	GO:0010114: response to red light	3.72E-04
35	GO:0009926: auxin polar transport	3.72E-04
36	GO:0009734: auxin-activated signaling pathway	3.97E-04
37	GO:0045493: xylan catabolic process	4.99E-04
38	GO:0090630: activation of GTPase activity	4.99E-04
39	GO:0010160: formation of animal organ boundary	4.99E-04
40	GO:0090391: granum assembly	4.99E-04
41	GO:0009768: photosynthesis, light harvesting in photosystem I	5.12E-04
42	GO:0009735: response to cytokinin	5.13E-04
43	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.14E-04
44	GO:0009740: gibberellic acid mediated signaling pathway	7.87E-04
45	GO:0009741: response to brassinosteroid	9.05E-04
46	GO:0042938: dipeptide transport	9.47E-04
47	GO:0009765: photosynthesis, light harvesting	9.47E-04
48	GO:0015994: chlorophyll metabolic process	9.47E-04
49	GO:0030007: cellular potassium ion homeostasis	9.47E-04
50	GO:0010117: photoprotection	1.20E-03
51	GO:0042549: photosystem II stabilization	1.47E-03
52	GO:0042176: regulation of protein catabolic process	1.47E-03
53	GO:0009913: epidermal cell differentiation	1.47E-03
54	GO:0060918: auxin transport	1.47E-03
55	GO:0040008: regulation of growth	1.57E-03
56	GO:0010029: regulation of seed germination	1.67E-03
57	GO:0010189: vitamin E biosynthetic process	1.76E-03
58	GO:2000033: regulation of seed dormancy process	1.76E-03
59	GO:0045926: negative regulation of growth	1.76E-03
60	GO:0009942: longitudinal axis specification	1.76E-03
61	GO:0007275: multicellular organism development	1.89E-03
62	GO:0018298: protein-chromophore linkage	2.05E-03
63	GO:0009769: photosynthesis, light harvesting in photosystem II	2.06E-03
64	GO:0050829: defense response to Gram-negative bacterium	2.06E-03
65	GO:0009645: response to low light intensity stimulus	2.06E-03
66	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.39E-03
67	GO:0009642: response to light intensity	2.39E-03
68	GO:0046620: regulation of organ growth	2.39E-03
69	GO:0006353: DNA-templated transcription, termination	2.39E-03
70	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	2.39E-03
71	GO:0009733: response to auxin	2.52E-03
72	GO:0007389: pattern specification process	2.73E-03
73	GO:0009657: plastid organization	2.73E-03
74	GO:0006631: fatty acid metabolic process	3.07E-03
75	GO:0019432: triglyceride biosynthetic process	3.08E-03
76	GO:0048507: meristem development	3.08E-03
77	GO:0034765: regulation of ion transmembrane transport	3.08E-03
78	GO:0010205: photoinhibition	3.46E-03
79	GO:0009688: abscisic acid biosynthetic process	3.84E-03
80	GO:0006949: syncytium formation	3.84E-03
81	GO:0009664: plant-type cell wall organization	4.17E-03
82	GO:0009750: response to fructose	4.24E-03
83	GO:0009698: phenylpropanoid metabolic process	4.24E-03
84	GO:0019684: photosynthesis, light reaction	4.24E-03
85	GO:0043085: positive regulation of catalytic activity	4.24E-03
86	GO:1903507: negative regulation of nucleic acid-templated transcription	4.24E-03
87	GO:0008361: regulation of cell size	4.65E-03
88	GO:0015706: nitrate transport	4.65E-03
89	GO:0006094: gluconeogenesis	5.08E-03
90	GO:0030048: actin filament-based movement	5.08E-03
91	GO:0010540: basipetal auxin transport	5.52E-03
92	GO:0009934: regulation of meristem structural organization	5.52E-03
93	GO:0006636: unsaturated fatty acid biosynthetic process	6.43E-03
94	GO:0006396: RNA processing	6.54E-03
95	GO:0048364: root development	6.59E-03
96	GO:0006289: nucleotide-excision repair	6.91E-03
97	GO:2000377: regulation of reactive oxygen species metabolic process	6.91E-03
98	GO:0009863: salicylic acid mediated signaling pathway	6.91E-03
99	GO:0010187: negative regulation of seed germination	6.91E-03
100	GO:0007017: microtubule-based process	7.40E-03
101	GO:0051260: protein homooligomerization	7.91E-03
102	GO:0009269: response to desiccation	7.91E-03
103	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.42E-03
104	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.95E-03
105	GO:0048443: stamen development	9.49E-03
106	GO:0006662: glycerol ether metabolic process	1.12E-02
107	GO:0010305: leaf vascular tissue pattern formation	1.12E-02
108	GO:0009958: positive gravitropism	1.12E-02
109	GO:0007018: microtubule-based movement	1.18E-02
110	GO:0048825: cotyledon development	1.24E-02
111	GO:0009749: response to glucose	1.24E-02
112	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.30E-02
113	GO:0010193: response to ozone	1.30E-02
114	GO:0010583: response to cyclopentenone	1.36E-02
115	GO:0009828: plant-type cell wall loosening	1.49E-02
116	GO:0010252: auxin homeostasis	1.49E-02
117	GO:0009639: response to red or far red light	1.49E-02
118	GO:0071805: potassium ion transmembrane transport	1.55E-02
119	GO:0009826: unidimensional cell growth	1.64E-02
120	GO:0010411: xyloglucan metabolic process	1.89E-02
121	GO:0016311: dephosphorylation	1.96E-02
122	GO:0000160: phosphorelay signal transduction system	2.11E-02
123	GO:0080167: response to karrikin	2.12E-02
124	GO:0007568: aging	2.25E-02
125	GO:0009910: negative regulation of flower development	2.25E-02
126	GO:0009631: cold acclimation	2.25E-02
127	GO:0048527: lateral root development	2.25E-02
128	GO:0010119: regulation of stomatal movement	2.25E-02
129	GO:0009867: jasmonic acid mediated signaling pathway	2.41E-02
130	GO:0016051: carbohydrate biosynthetic process	2.41E-02
131	GO:0034599: cellular response to oxidative stress	2.48E-02
132	GO:0009744: response to sucrose	2.88E-02
133	GO:0009644: response to high light intensity	3.05E-02
134	GO:0006629: lipid metabolic process	3.12E-02
135	GO:0006397: mRNA processing	3.26E-02
136	GO:0031347: regulation of defense response	3.30E-02
137	GO:0042538: hyperosmotic salinity response	3.39E-02
138	GO:0006364: rRNA processing	3.56E-02
139	GO:0009736: cytokinin-activated signaling pathway	3.56E-02
140	GO:0010224: response to UV-B	3.65E-02
141	GO:0006857: oligopeptide transport	3.74E-02
142	GO:0006417: regulation of translation	3.83E-02
143	GO:0006096: glycolytic process	4.01E-02
144	GO:0042545: cell wall modification	4.48E-02
145	GO:0009742: brassinosteroid mediated signaling pathway	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0015269: calcium-activated potassium channel activity	0.00E+00
4	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0045550: geranylgeranyl reductase activity	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.31E-04
10	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.31E-04
11	GO:0005344: oxygen transporter activity	1.31E-04
12	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.31E-04
13	GO:0010242: oxygen evolving activity	1.31E-04
14	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.31E-04
15	GO:0010329: auxin efflux transmembrane transporter activity	2.95E-04
16	GO:0016868: intramolecular transferase activity, phosphotransferases	3.03E-04
17	GO:0004312: fatty acid synthase activity	3.03E-04
18	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.03E-04
19	GO:0004826: phenylalanine-tRNA ligase activity	3.03E-04
20	GO:0019172: glyoxalase III activity	3.03E-04
21	GO:0031409: pigment binding	4.19E-04
22	GO:0016805: dipeptidase activity	4.99E-04
23	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	4.99E-04
24	GO:0004180: carboxypeptidase activity	4.99E-04
25	GO:0019201: nucleotide kinase activity	7.14E-04
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.14E-04
27	GO:0016851: magnesium chelatase activity	7.14E-04
28	GO:0046556: alpha-L-arabinofuranosidase activity	9.47E-04
29	GO:0016279: protein-lysine N-methyltransferase activity	9.47E-04
30	GO:0042936: dipeptide transporter activity	9.47E-04
31	GO:0004045: aminoacyl-tRNA hydrolase activity	9.47E-04
32	GO:0070628: proteasome binding	9.47E-04
33	GO:0009044: xylan 1,4-beta-xylosidase activity	9.47E-04
34	GO:0017137: Rab GTPase binding	1.20E-03
35	GO:0015271: outward rectifier potassium channel activity	1.47E-03
36	GO:0004332: fructose-bisphosphate aldolase activity	1.47E-03
37	GO:0031593: polyubiquitin binding	1.47E-03
38	GO:0004462: lactoylglutathione lyase activity	1.47E-03
39	GO:0016168: chlorophyll binding	1.67E-03
40	GO:0004017: adenylate kinase activity	1.76E-03
41	GO:0004602: glutathione peroxidase activity	1.76E-03
42	GO:0005096: GTPase activator activity	2.15E-03
43	GO:0004525: ribonuclease III activity	2.39E-03
44	GO:0005267: potassium channel activity	2.73E-03
45	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.82E-03
46	GO:0000989: transcription factor activity, transcription factor binding	3.08E-03
47	GO:0005515: protein binding	3.30E-03
48	GO:0005381: iron ion transmembrane transporter activity	3.46E-03
49	GO:0009672: auxin:proton symporter activity	3.46E-03
50	GO:0043621: protein self-association	3.59E-03
51	GO:0008047: enzyme activator activity	3.84E-03
52	GO:0015020: glucuronosyltransferase activity	3.84E-03
53	GO:0047372: acylglycerol lipase activity	4.24E-03
54	GO:0000049: tRNA binding	4.65E-03
55	GO:0003777: microtubule motor activity	4.95E-03
56	GO:0031072: heat shock protein binding	5.08E-03
57	GO:0008081: phosphoric diester hydrolase activity	5.08E-03
58	GO:0003774: motor activity	5.52E-03
59	GO:0008266: poly(U) RNA binding	5.52E-03
60	GO:0043130: ubiquitin binding	6.91E-03
61	GO:0003714: transcription corepressor activity	6.91E-03
62	GO:0005216: ion channel activity	7.40E-03
63	GO:0033612: receptor serine/threonine kinase binding	7.91E-03
64	GO:0003727: single-stranded RNA binding	9.49E-03
65	GO:0003756: protein disulfide isomerase activity	9.49E-03
66	GO:0047134: protein-disulfide reductase activity	1.00E-02
67	GO:0004791: thioredoxin-disulfide reductase activity	1.18E-02
68	GO:0048038: quinone binding	1.30E-02
69	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.42E-02
70	GO:0000156: phosphorelay response regulator activity	1.42E-02
71	GO:0003684: damaged DNA binding	1.49E-02
72	GO:0005200: structural constituent of cytoskeleton	1.55E-02
73	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.55E-02
74	GO:0008375: acetylglucosaminyltransferase activity	1.82E-02
75	GO:0003993: acid phosphatase activity	2.48E-02
76	GO:0004185: serine-type carboxypeptidase activity	2.88E-02
77	GO:0005215: transporter activity	3.56E-02
78	GO:0045330: aspartyl esterase activity	3.83E-02
79	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.11E-02
80	GO:0008289: lipid binding	4.33E-02
81	GO:0030599: pectinesterase activity	4.39E-02
82	GO:0051082: unfolded protein binding	4.58E-02
83	GO:0015035: protein disulfide oxidoreductase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	4.67E-18
4	GO:0009507: chloroplast	8.22E-18
5	GO:0009535: chloroplast thylakoid membrane	7.73E-16
6	GO:0009570: chloroplast stroma	8.01E-11
7	GO:0009941: chloroplast envelope	5.22E-08
8	GO:0010287: plastoglobule	3.79E-07
9	GO:0009543: chloroplast thylakoid lumen	4.48E-07
10	GO:0030095: chloroplast photosystem II	1.02E-05
11	GO:0009517: PSII associated light-harvesting complex II	1.44E-05
12	GO:0009579: thylakoid	2.19E-05
13	GO:0009522: photosystem I	6.15E-05
14	GO:0009538: photosystem I reaction center	8.68E-05
15	GO:0031977: thylakoid lumen	3.34E-04
16	GO:0030076: light-harvesting complex	3.75E-04
17	GO:0010007: magnesium chelatase complex	4.99E-04
18	GO:0031969: chloroplast membrane	6.63E-04
19	GO:0009531: secondary cell wall	7.14E-04
20	GO:0042646: plastid nucleoid	7.14E-04
21	GO:0009523: photosystem II	1.04E-03
22	GO:0055035: plastid thylakoid membrane	1.20E-03
23	GO:0016363: nuclear matrix	1.76E-03
24	GO:0042644: chloroplast nucleoid	3.08E-03
25	GO:0045298: tubulin complex	3.08E-03
26	GO:0016459: myosin complex	3.84E-03
27	GO:0016602: CCAAT-binding factor complex	5.08E-03
28	GO:0009508: plastid chromosome	5.08E-03
29	GO:0009654: photosystem II oxygen evolving complex	7.40E-03
30	GO:0016020: membrane	9.00E-03
31	GO:0005871: kinesin complex	1.00E-02
32	GO:0019898: extrinsic component of membrane	1.24E-02
33	GO:0071944: cell periphery	1.42E-02
34	GO:0009295: nucleoid	1.55E-02
35	GO:0030529: intracellular ribonucleoprotein complex	1.68E-02
36	GO:0005874: microtubule	2.04E-02
37	GO:0005618: cell wall	2.25E-02
38	GO:0000325: plant-type vacuole	2.25E-02
39	GO:0012505: endomembrane system	4.48E-02
40	GO:0009706: chloroplast inner membrane	4.58E-02