GO Enrichment Analysis of Co-expressed Genes with
AT2G44650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 2 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 3 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 4 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:0006412: translation | 6.02E-11 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 6.96E-09 |
| 8 | GO:0009735: response to cytokinin | 1.16E-07 |
| 9 | GO:0006353: DNA-templated transcription, termination | 1.41E-06 |
| 10 | GO:0009658: chloroplast organization | 7.59E-06 |
| 11 | GO:0042254: ribosome biogenesis | 8.01E-06 |
| 12 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.39E-05 |
| 13 | GO:0042255: ribosome assembly | 1.06E-04 |
| 14 | GO:0009828: plant-type cell wall loosening | 1.32E-04 |
| 15 | GO:0071482: cellular response to light stimulus | 1.33E-04 |
| 16 | GO:0032544: plastid translation | 1.33E-04 |
| 17 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.50E-04 |
| 18 | GO:0043489: RNA stabilization | 1.50E-04 |
| 19 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.50E-04 |
| 20 | GO:1904964: positive regulation of phytol biosynthetic process | 1.50E-04 |
| 21 | GO:0042759: long-chain fatty acid biosynthetic process | 1.50E-04 |
| 22 | GO:0042371: vitamin K biosynthetic process | 1.50E-04 |
| 23 | GO:0010027: thylakoid membrane organization | 1.70E-04 |
| 24 | GO:0015979: photosynthesis | 1.79E-04 |
| 25 | GO:0006352: DNA-templated transcription, initiation | 2.70E-04 |
| 26 | GO:0009451: RNA modification | 3.32E-04 |
| 27 | GO:0006568: tryptophan metabolic process | 3.42E-04 |
| 28 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.42E-04 |
| 29 | GO:0015675: nickel cation transport | 5.61E-04 |
| 30 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.61E-04 |
| 31 | GO:0010623: programmed cell death involved in cell development | 5.61E-04 |
| 32 | GO:0009664: plant-type cell wall organization | 6.26E-04 |
| 33 | GO:0010239: chloroplast mRNA processing | 8.03E-04 |
| 34 | GO:0006241: CTP biosynthetic process | 8.03E-04 |
| 35 | GO:0006165: nucleoside diphosphate phosphorylation | 8.03E-04 |
| 36 | GO:0006228: UTP biosynthetic process | 8.03E-04 |
| 37 | GO:0010088: phloem development | 8.03E-04 |
| 38 | GO:0033014: tetrapyrrole biosynthetic process | 8.03E-04 |
| 39 | GO:0006424: glutamyl-tRNA aminoacylation | 8.03E-04 |
| 40 | GO:2001141: regulation of RNA biosynthetic process | 8.03E-04 |
| 41 | GO:0006183: GTP biosynthetic process | 1.06E-03 |
| 42 | GO:0071483: cellular response to blue light | 1.06E-03 |
| 43 | GO:0045454: cell redox homeostasis | 1.14E-03 |
| 44 | GO:0006457: protein folding | 1.29E-03 |
| 45 | GO:0032543: mitochondrial translation | 1.35E-03 |
| 46 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.35E-03 |
| 47 | GO:0032502: developmental process | 1.40E-03 |
| 48 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.65E-03 |
| 49 | GO:1901259: chloroplast rRNA processing | 1.98E-03 |
| 50 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.98E-03 |
| 51 | GO:0010019: chloroplast-nucleus signaling pathway | 1.98E-03 |
| 52 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.33E-03 |
| 53 | GO:0006400: tRNA modification | 2.33E-03 |
| 54 | GO:0048564: photosystem I assembly | 2.70E-03 |
| 55 | GO:0045292: mRNA cis splicing, via spliceosome | 2.70E-03 |
| 56 | GO:0006605: protein targeting | 2.70E-03 |
| 57 | GO:0009631: cold acclimation | 2.82E-03 |
| 58 | GO:0009657: plastid organization | 3.08E-03 |
| 59 | GO:0034599: cellular response to oxidative stress | 3.23E-03 |
| 60 | GO:0009826: unidimensional cell growth | 3.48E-03 |
| 61 | GO:0006783: heme biosynthetic process | 3.49E-03 |
| 62 | GO:0000373: Group II intron splicing | 3.49E-03 |
| 63 | GO:0009793: embryo development ending in seed dormancy | 3.75E-03 |
| 64 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.91E-03 |
| 65 | GO:0006949: syncytium formation | 4.35E-03 |
| 66 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.35E-03 |
| 67 | GO:0045036: protein targeting to chloroplast | 4.35E-03 |
| 68 | GO:0009073: aromatic amino acid family biosynthetic process | 4.80E-03 |
| 69 | GO:0043085: positive regulation of catalytic activity | 4.80E-03 |
| 70 | GO:0051603: proteolysis involved in cellular protein catabolic process | 5.54E-03 |
| 71 | GO:0009767: photosynthetic electron transport chain | 5.75E-03 |
| 72 | GO:2000012: regulation of auxin polar transport | 5.75E-03 |
| 73 | GO:0010207: photosystem II assembly | 6.25E-03 |
| 74 | GO:0090351: seedling development | 6.77E-03 |
| 75 | GO:0010025: wax biosynthetic process | 7.30E-03 |
| 76 | GO:0000027: ribosomal large subunit assembly | 7.84E-03 |
| 77 | GO:0009411: response to UV | 1.02E-02 |
| 78 | GO:0009306: protein secretion | 1.08E-02 |
| 79 | GO:0009790: embryo development | 1.11E-02 |
| 80 | GO:0006633: fatty acid biosynthetic process | 1.20E-02 |
| 81 | GO:0042335: cuticle development | 1.20E-02 |
| 82 | GO:0080022: primary root development | 1.20E-02 |
| 83 | GO:0008033: tRNA processing | 1.20E-02 |
| 84 | GO:0006662: glycerol ether metabolic process | 1.27E-02 |
| 85 | GO:0007018: microtubule-based movement | 1.34E-02 |
| 86 | GO:0009791: post-embryonic development | 1.41E-02 |
| 87 | GO:0000302: response to reactive oxygen species | 1.47E-02 |
| 88 | GO:0016032: viral process | 1.55E-02 |
| 89 | GO:0008380: RNA splicing | 1.58E-02 |
| 90 | GO:0009409: response to cold | 1.72E-02 |
| 91 | GO:0009817: defense response to fungus, incompatible interaction | 2.31E-02 |
| 92 | GO:0018298: protein-chromophore linkage | 2.31E-02 |
| 93 | GO:0009637: response to blue light | 2.74E-02 |
| 94 | GO:0045087: innate immune response | 2.74E-02 |
| 95 | GO:0006839: mitochondrial transport | 3.00E-02 |
| 96 | GO:0030001: metal ion transport | 3.00E-02 |
| 97 | GO:0042542: response to hydrogen peroxide | 3.19E-02 |
| 98 | GO:0010114: response to red light | 3.28E-02 |
| 99 | GO:0009809: lignin biosynthetic process | 4.05E-02 |
| 100 | GO:0006364: rRNA processing | 4.05E-02 |
| 101 | GO:0009585: red, far-red light phototransduction | 4.05E-02 |
| 102 | GO:0009740: gibberellic acid mediated signaling pathway | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 4 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 5 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 1.38E-21 |
| 8 | GO:0003735: structural constituent of ribosome | 2.41E-14 |
| 9 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.11E-06 |
| 10 | GO:0016851: magnesium chelatase activity | 9.63E-06 |
| 11 | GO:0001053: plastid sigma factor activity | 1.80E-05 |
| 12 | GO:0016987: sigma factor activity | 1.80E-05 |
| 13 | GO:0043495: protein anchor | 1.80E-05 |
| 14 | GO:0051920: peroxiredoxin activity | 6.14E-05 |
| 15 | GO:0016209: antioxidant activity | 1.06E-04 |
| 16 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.50E-04 |
| 17 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.50E-04 |
| 18 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.50E-04 |
| 19 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.50E-04 |
| 20 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 3.42E-04 |
| 21 | GO:0000774: adenyl-nucleotide exchange factor activity | 3.42E-04 |
| 22 | GO:0016630: protochlorophyllide reductase activity | 3.42E-04 |
| 23 | GO:0015099: nickel cation transmembrane transporter activity | 3.42E-04 |
| 24 | GO:0008266: poly(U) RNA binding | 4.00E-04 |
| 25 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 5.61E-04 |
| 26 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 5.61E-04 |
| 27 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.71E-04 |
| 28 | GO:0051087: chaperone binding | 6.09E-04 |
| 29 | GO:0003723: RNA binding | 7.57E-04 |
| 30 | GO:0004550: nucleoside diphosphate kinase activity | 8.03E-04 |
| 31 | GO:0003727: single-stranded RNA binding | 8.59E-04 |
| 32 | GO:0016836: hydro-lyase activity | 1.06E-03 |
| 33 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.06E-03 |
| 34 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.35E-03 |
| 35 | GO:0003959: NADPH dehydrogenase activity | 1.35E-03 |
| 36 | GO:0004130: cytochrome-c peroxidase activity | 1.65E-03 |
| 37 | GO:0016688: L-ascorbate peroxidase activity | 1.65E-03 |
| 38 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.98E-03 |
| 39 | GO:0016831: carboxy-lyase activity | 2.33E-03 |
| 40 | GO:0019899: enzyme binding | 2.33E-03 |
| 41 | GO:0008312: 7S RNA binding | 2.70E-03 |
| 42 | GO:0004033: aldo-keto reductase (NADP) activity | 2.70E-03 |
| 43 | GO:0052747: sinapyl alcohol dehydrogenase activity | 2.70E-03 |
| 44 | GO:0004601: peroxidase activity | 3.65E-03 |
| 45 | GO:0047617: acyl-CoA hydrolase activity | 3.91E-03 |
| 46 | GO:0043621: protein self-association | 4.30E-03 |
| 47 | GO:0008047: enzyme activator activity | 4.35E-03 |
| 48 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 5.27E-03 |
| 49 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.35E-03 |
| 50 | GO:0003690: double-stranded DNA binding | 5.54E-03 |
| 51 | GO:0003729: mRNA binding | 5.69E-03 |
| 52 | GO:0042803: protein homodimerization activity | 6.39E-03 |
| 53 | GO:0051082: unfolded protein binding | 7.61E-03 |
| 54 | GO:0005528: FK506 binding | 7.84E-03 |
| 55 | GO:0004519: endonuclease activity | 8.75E-03 |
| 56 | GO:0022891: substrate-specific transmembrane transporter activity | 1.02E-02 |
| 57 | GO:0047134: protein-disulfide reductase activity | 1.14E-02 |
| 58 | GO:0008080: N-acetyltransferase activity | 1.27E-02 |
| 59 | GO:0004791: thioredoxin-disulfide reductase activity | 1.34E-02 |
| 60 | GO:0010181: FMN binding | 1.34E-02 |
| 61 | GO:0004197: cysteine-type endopeptidase activity | 1.55E-02 |
| 62 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.62E-02 |
| 63 | GO:0016491: oxidoreductase activity | 1.65E-02 |
| 64 | GO:0008483: transaminase activity | 1.76E-02 |
| 65 | GO:0016168: chlorophyll binding | 1.99E-02 |
| 66 | GO:0000287: magnesium ion binding | 2.01E-02 |
| 67 | GO:0016740: transferase activity | 2.09E-02 |
| 68 | GO:0016788: hydrolase activity, acting on ester bonds | 2.09E-02 |
| 69 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.31E-02 |
| 70 | GO:0005507: copper ion binding | 2.54E-02 |
| 71 | GO:0030145: manganese ion binding | 2.56E-02 |
| 72 | GO:0003746: translation elongation factor activity | 2.74E-02 |
| 73 | GO:0052689: carboxylic ester hydrolase activity | 2.81E-02 |
| 74 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.00E-02 |
| 75 | GO:0004185: serine-type carboxypeptidase activity | 3.28E-02 |
| 76 | GO:0003924: GTPase activity | 3.74E-02 |
| 77 | GO:0003777: microtubule motor activity | 4.36E-02 |
| 78 | GO:0008234: cysteine-type peptidase activity | 4.36E-02 |
| 79 | GO:0045735: nutrient reservoir activity | 4.56E-02 |
| 80 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.67E-02 |
| 81 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.88E-02 |
| 82 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 6.87E-44 |
| 2 | GO:0009570: chloroplast stroma | 4.31E-42 |
| 3 | GO:0009941: chloroplast envelope | 8.02E-28 |
| 4 | GO:0009579: thylakoid | 2.75E-13 |
| 5 | GO:0005840: ribosome | 7.62E-13 |
| 6 | GO:0009534: chloroplast thylakoid | 1.85E-09 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.72E-07 |
| 8 | GO:0010007: magnesium chelatase complex | 4.13E-06 |
| 9 | GO:0000311: plastid large ribosomal subunit | 8.86E-06 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 1.54E-05 |
| 11 | GO:0009547: plastid ribosome | 1.50E-04 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.50E-04 |
| 13 | GO:0080085: signal recognition particle, chloroplast targeting | 3.42E-04 |
| 14 | GO:0000312: plastid small ribosomal subunit | 4.00E-04 |
| 15 | GO:0031977: thylakoid lumen | 4.23E-04 |
| 16 | GO:0042651: thylakoid membrane | 6.09E-04 |
| 17 | GO:0009505: plant-type cell wall | 1.12E-03 |
| 18 | GO:0005618: cell wall | 1.16E-03 |
| 19 | GO:0000793: condensed chromosome | 1.65E-03 |
| 20 | GO:0009295: nucleoid | 1.68E-03 |
| 21 | GO:0016020: membrane | 1.77E-03 |
| 22 | GO:0043231: intracellular membrane-bounded organelle | 1.81E-03 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 2.33E-03 |
| 24 | GO:0000794: condensed nuclear chromosome | 2.33E-03 |
| 25 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.08E-03 |
| 26 | GO:0009536: plastid | 4.06E-03 |
| 27 | GO:0090404: pollen tube tip | 4.80E-03 |
| 28 | GO:0022625: cytosolic large ribosomal subunit | 5.11E-03 |
| 29 | GO:0005578: proteinaceous extracellular matrix | 5.75E-03 |
| 30 | GO:0009508: plastid chromosome | 5.75E-03 |
| 31 | GO:0005764: lysosome | 6.25E-03 |
| 32 | GO:0043234: protein complex | 7.30E-03 |
| 33 | GO:0015935: small ribosomal subunit | 8.97E-03 |
| 34 | GO:0009532: plastid stroma | 8.97E-03 |
| 35 | GO:0048046: apoplast | 9.08E-03 |
| 36 | GO:0005871: kinesin complex | 1.14E-02 |
| 37 | GO:0005759: mitochondrial matrix | 1.20E-02 |
| 38 | GO:0009523: photosystem II | 1.41E-02 |
| 39 | GO:0022626: cytosolic ribosome | 1.54E-02 |
| 40 | GO:0022627: cytosolic small ribosomal subunit | 1.75E-02 |
| 41 | GO:0010319: stromule | 1.76E-02 |
| 42 | GO:0030529: intracellular ribonucleoprotein complex | 1.92E-02 |
| 43 | GO:0031969: chloroplast membrane | 2.54E-02 |
| 44 | GO:0000325: plant-type vacuole | 2.56E-02 |
| 45 | GO:0015934: large ribosomal subunit | 2.56E-02 |