co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0034337: RNA folding	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
9	GO:0042493: response to drug	0.00E+00
10	GO:0042371: vitamin K biosynthetic process	0.00E+00
11	GO:0032544: plastid translation	1.90E-09
12	GO:0006412: translation	3.88E-09
13	GO:0015995: chlorophyll biosynthetic process	9.35E-09
14	GO:0015979: photosynthesis	6.52E-08
15	GO:0042254: ribosome biogenesis	1.96E-07
16	GO:0009658: chloroplast organization	2.30E-06
17	GO:0010027: thylakoid membrane organization	4.72E-06
18	GO:0090391: granum assembly	1.87E-05
19	GO:0009773: photosynthetic electron transport in photosystem I	4.80E-05
20	GO:0016024: CDP-diacylglycerol biosynthetic process	5.98E-05
21	GO:0006655: phosphatidylglycerol biosynthetic process	1.66E-04
22	GO:1901259: chloroplast rRNA processing	2.25E-04
23	GO:0009772: photosynthetic electron transport in photosystem II	2.93E-04
24	GO:0010196: nonphotochemical quenching	2.93E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	3.42E-04
26	GO:0043489: RNA stabilization	3.42E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	3.42E-04
28	GO:0000481: maturation of 5S rRNA	3.42E-04
29	GO:1904964: positive regulation of phytol biosynthetic process	3.42E-04
30	GO:0042335: cuticle development	3.43E-04
31	GO:0048564: photosystem I assembly	3.67E-04
32	GO:0006353: DNA-templated transcription, termination	3.67E-04
33	GO:0006605: protein targeting	3.67E-04
34	GO:0009735: response to cytokinin	4.25E-04
35	GO:0006568: tryptophan metabolic process	7.45E-04
36	GO:0010024: phytochromobilin biosynthetic process	7.45E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.45E-04
38	GO:0006898: receptor-mediated endocytosis	7.45E-04
39	GO:0034755: iron ion transmembrane transport	7.45E-04
40	GO:0001736: establishment of planar polarity	7.45E-04
41	GO:0048829: root cap development	7.45E-04
42	GO:0006006: glucose metabolic process	1.11E-03
43	GO:0006954: inflammatory response	1.21E-03
44	GO:0006518: peptide metabolic process	1.21E-03
45	GO:0006788: heme oxidation	1.21E-03
46	GO:0016045: detection of bacterium	1.21E-03
47	GO:0010359: regulation of anion channel activity	1.21E-03
48	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.21E-03
49	GO:0010207: photosystem II assembly	1.25E-03
50	GO:0009152: purine ribonucleotide biosynthetic process	1.74E-03
51	GO:0046653: tetrahydrofolate metabolic process	1.74E-03
52	GO:0010239: chloroplast mRNA processing	1.74E-03
53	GO:0019048: modulation by virus of host morphology or physiology	1.74E-03
54	GO:0009800: cinnamic acid biosynthetic process	1.74E-03
55	GO:0009650: UV protection	1.74E-03
56	GO:0046739: transport of virus in multicellular host	1.74E-03
57	GO:1901332: negative regulation of lateral root development	1.74E-03
58	GO:0031048: chromatin silencing by small RNA	1.74E-03
59	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.74E-03
60	GO:2001141: regulation of RNA biosynthetic process	1.74E-03
61	GO:0030001: metal ion transport	1.76E-03
62	GO:0009451: RNA modification	2.03E-03
63	GO:0003333: amino acid transmembrane transport	2.09E-03
64	GO:0010109: regulation of photosynthesis	2.33E-03
65	GO:0045727: positive regulation of translation	2.33E-03
66	GO:0015994: chlorophyll metabolic process	2.33E-03
67	GO:0051567: histone H3-K9 methylation	2.33E-03
68	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.49E-03
69	GO:0009306: protein secretion	2.71E-03
70	GO:0031365: N-terminal protein amino acid modification	2.98E-03
71	GO:0006564: L-serine biosynthetic process	2.98E-03
72	GO:0010236: plastoquinone biosynthetic process	2.98E-03
73	GO:0045038: protein import into chloroplast thylakoid membrane	2.98E-03
74	GO:0048497: maintenance of floral organ identity	2.98E-03
75	GO:0000413: protein peptidyl-prolyl isomerization	3.17E-03
76	GO:0006751: glutathione catabolic process	3.68E-03
77	GO:0042549: photosystem II stabilization	3.68E-03
78	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.68E-03
79	GO:0000470: maturation of LSU-rRNA	3.68E-03
80	GO:0009913: epidermal cell differentiation	3.68E-03
81	GO:0006559: L-phenylalanine catabolic process	3.68E-03
82	GO:0016458: gene silencing	3.68E-03
83	GO:0010019: chloroplast-nucleus signaling pathway	4.43E-03
84	GO:0042372: phylloquinone biosynthetic process	4.43E-03
85	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.43E-03
86	GO:0017148: negative regulation of translation	4.43E-03
87	GO:0048280: vesicle fusion with Golgi apparatus	4.43E-03
88	GO:0009828: plant-type cell wall loosening	5.11E-03
89	GO:1900056: negative regulation of leaf senescence	5.23E-03
90	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.23E-03
91	GO:0006400: tRNA modification	5.23E-03
92	GO:0045292: mRNA cis splicing, via spliceosome	6.08E-03
93	GO:0042255: ribosome assembly	6.08E-03
94	GO:0032508: DNA duplex unwinding	6.08E-03
95	GO:0009416: response to light stimulus	6.70E-03
96	GO:0009627: systemic acquired resistance	6.81E-03
97	GO:0071482: cellular response to light stimulus	6.98E-03
98	GO:0010497: plasmodesmata-mediated intercellular transport	6.98E-03
99	GO:0009051: pentose-phosphate shunt, oxidative branch	7.91E-03
100	GO:0009245: lipid A biosynthetic process	7.91E-03
101	GO:0010206: photosystem II repair	7.91E-03
102	GO:0000373: Group II intron splicing	7.91E-03
103	GO:0010311: lateral root formation	8.37E-03
104	GO:0010205: photoinhibition	8.89E-03
105	GO:0009638: phototropism	8.89E-03
106	GO:0032259: methylation	8.96E-03
107	GO:0016042: lipid catabolic process	9.16E-03
108	GO:0009631: cold acclimation	9.22E-03
109	GO:0045490: pectin catabolic process	9.50E-03
110	GO:0006865: amino acid transport	9.66E-03
111	GO:0006949: syncytium formation	9.92E-03
112	GO:0006896: Golgi to vacuole transport	9.92E-03
113	GO:0030422: production of siRNA involved in RNA interference	9.92E-03
114	GO:0034599: cellular response to oxidative stress	1.06E-02
115	GO:0048765: root hair cell differentiation	1.10E-02
116	GO:0009073: aromatic amino acid family biosynthetic process	1.10E-02
117	GO:0043085: positive regulation of catalytic activity	1.10E-02
118	GO:0052544: defense response by callose deposition in cell wall	1.10E-02
119	GO:0006879: cellular iron ion homeostasis	1.10E-02
120	GO:0006352: DNA-templated transcription, initiation	1.10E-02
121	GO:0010114: response to red light	1.31E-02
122	GO:0009718: anthocyanin-containing compound biosynthetic process	1.32E-02
123	GO:0010588: cotyledon vascular tissue pattern formation	1.32E-02
124	GO:2000012: regulation of auxin polar transport	1.32E-02
125	GO:0010102: lateral root morphogenesis	1.32E-02
126	GO:0009785: blue light signaling pathway	1.32E-02
127	GO:0010628: positive regulation of gene expression	1.32E-02
128	GO:0009409: response to cold	1.37E-02
129	GO:0010143: cutin biosynthetic process	1.44E-02
130	GO:0019253: reductive pentose-phosphate cycle	1.44E-02
131	GO:0009664: plant-type cell wall organization	1.64E-02
132	GO:0006636: unsaturated fatty acid biosynthetic process	1.69E-02
133	GO:0006364: rRNA processing	1.77E-02
134	GO:0000027: ribosomal large subunit assembly	1.82E-02
135	GO:0051017: actin filament bundle assembly	1.82E-02
136	GO:0006825: copper ion transport	1.95E-02
137	GO:0007017: microtubule-based process	1.95E-02
138	GO:0006306: DNA methylation	2.08E-02
139	GO:0042742: defense response to bacterium	2.26E-02
140	GO:0009411: response to UV	2.37E-02
141	GO:0009624: response to nematode	2.52E-02
142	GO:0042147: retrograde transport, endosome to Golgi	2.66E-02
143	GO:0045454: cell redox homeostasis	2.73E-02
144	GO:0080022: primary root development	2.81E-02
145	GO:0008033: tRNA processing	2.81E-02
146	GO:0006342: chromatin silencing	2.96E-02
147	GO:0009958: positive gravitropism	2.96E-02
148	GO:0006662: glycerol ether metabolic process	2.96E-02
149	GO:0007018: microtubule-based movement	3.12E-02
150	GO:0009646: response to absence of light	3.12E-02
151	GO:0015986: ATP synthesis coupled proton transport	3.12E-02
152	GO:0006623: protein targeting to vacuole	3.28E-02
153	GO:0048825: cotyledon development	3.28E-02
154	GO:0006457: protein folding	3.31E-02
155	GO:0009058: biosynthetic process	3.32E-02
156	GO:0000302: response to reactive oxygen species	3.44E-02
157	GO:0006891: intra-Golgi vesicle-mediated transport	3.44E-02
158	GO:0032502: developmental process	3.61E-02
159	GO:0016032: viral process	3.61E-02
160	GO:0009790: embryo development	3.68E-02
161	GO:0009793: embryo development ending in seed dormancy	3.74E-02
162	GO:0030163: protein catabolic process	3.78E-02
163	GO:0010090: trichome morphogenesis	3.78E-02
164	GO:0006633: fatty acid biosynthetic process	3.95E-02
165	GO:0008152: metabolic process	3.99E-02
166	GO:0071805: potassium ion transmembrane transport	4.12E-02
167	GO:0051607: defense response to virus	4.30E-02
168	GO:0009816: defense response to bacterium, incompatible interaction	4.65E-02
169	GO:0009739: response to gibberellin	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0047661: amino-acid racemase activity	0.00E+00
11	GO:0019843: rRNA binding	1.13E-17
12	GO:0003735: structural constituent of ribosome	5.28E-10
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.52E-07
14	GO:0016851: magnesium chelatase activity	2.08E-07
15	GO:0005528: FK506 binding	6.00E-06
16	GO:0043023: ribosomal large subunit binding	4.12E-05
17	GO:0008266: poly(U) RNA binding	8.85E-05
18	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.66E-04
19	GO:0016788: hydrolase activity, acting on ester bonds	1.74E-04
20	GO:0003723: RNA binding	3.12E-04
21	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.42E-04
22	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.42E-04
23	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.42E-04
24	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.42E-04
25	GO:0045485: omega-6 fatty acid desaturase activity	3.42E-04
26	GO:0047746: chlorophyllase activity	7.45E-04
27	GO:0003839: gamma-glutamylcyclotransferase activity	7.45E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	7.45E-04
29	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.45E-04
30	GO:0016630: protochlorophyllide reductase activity	7.45E-04
31	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.45E-04
32	GO:0008864: formyltetrahydrofolate deformylase activity	1.21E-03
33	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.21E-03
34	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.21E-03
35	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.21E-03
36	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.21E-03
37	GO:0045548: phenylalanine ammonia-lyase activity	1.21E-03
38	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.21E-03
39	GO:0008097: 5S rRNA binding	1.74E-03
40	GO:0001872: (1->3)-beta-D-glucan binding	1.74E-03
41	GO:0035197: siRNA binding	1.74E-03
42	GO:0004659: prenyltransferase activity	2.33E-03
43	GO:0001053: plastid sigma factor activity	2.33E-03
44	GO:0010011: auxin binding	2.33E-03
45	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.33E-03
46	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.33E-03
47	GO:0016987: sigma factor activity	2.33E-03
48	GO:0010328: auxin influx transmembrane transporter activity	2.33E-03
49	GO:0043495: protein anchor	2.33E-03
50	GO:0004392: heme oxygenase (decyclizing) activity	2.33E-03
51	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.33E-03
52	GO:0030570: pectate lyase activity	2.49E-03
53	GO:0003959: NADPH dehydrogenase activity	2.98E-03
54	GO:0004040: amidase activity	2.98E-03
55	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.68E-03
56	GO:0031177: phosphopantetheine binding	3.68E-03
57	GO:0004130: cytochrome-c peroxidase activity	3.68E-03
58	GO:0016688: L-ascorbate peroxidase activity	3.68E-03
59	GO:0051920: peroxiredoxin activity	4.43E-03
60	GO:0000035: acyl binding	4.43E-03
61	GO:0016791: phosphatase activity	5.11E-03
62	GO:0008235: metalloexopeptidase activity	5.23E-03
63	GO:0019899: enzyme binding	5.23E-03
64	GO:0016597: amino acid binding	5.76E-03
65	GO:0003729: mRNA binding	5.83E-03
66	GO:0016209: antioxidant activity	6.08E-03
67	GO:0008312: 7S RNA binding	6.08E-03
68	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.08E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	6.08E-03
70	GO:0043022: ribosome binding	6.08E-03
71	GO:0052689: carboxylic ester hydrolase activity	6.16E-03
72	GO:0008236: serine-type peptidase activity	7.57E-03
73	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.97E-03
74	GO:0005381: iron ion transmembrane transporter activity	8.89E-03
75	GO:0047617: acyl-CoA hydrolase activity	8.89E-03
76	GO:0008047: enzyme activator activity	9.92E-03
77	GO:0015020: glucuronosyltransferase activity	9.92E-03
78	GO:0004177: aminopeptidase activity	1.10E-02
79	GO:0050661: NADP binding	1.15E-02
80	GO:0004521: endoribonuclease activity	1.21E-02
81	GO:0008081: phosphoric diester hydrolase activity	1.32E-02
82	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.44E-02
83	GO:0015293: symporter activity	1.47E-02
84	GO:0008168: methyltransferase activity	1.58E-02
85	GO:0051287: NAD binding	1.59E-02
86	GO:0051087: chaperone binding	1.95E-02
87	GO:0015079: potassium ion transmembrane transporter activity	1.95E-02
88	GO:0015171: amino acid transmembrane transporter activity	1.96E-02
89	GO:0022891: substrate-specific transmembrane transporter activity	2.37E-02
90	GO:0003727: single-stranded RNA binding	2.51E-02
91	GO:0016746: transferase activity, transferring acyl groups	2.59E-02
92	GO:0047134: protein-disulfide reductase activity	2.66E-02
93	GO:0008080: N-acetyltransferase activity	2.96E-02
94	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.96E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	3.12E-02
96	GO:0050662: coenzyme binding	3.12E-02
97	GO:0016829: lyase activity	3.41E-02
98	GO:0004252: serine-type endopeptidase activity	3.50E-02
99	GO:0016491: oxidoreductase activity	3.58E-02
100	GO:0004518: nuclease activity	3.61E-02
101	GO:0051015: actin filament binding	3.78E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.78E-02
103	GO:0004519: endonuclease activity	3.92E-02
104	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.05E-02
105	GO:0005200: structural constituent of cytoskeleton	4.12E-02
106	GO:0016168: chlorophyll binding	4.65E-02
107	GO:0008375: acetylglucosaminyltransferase activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	4.99E-50
4	GO:0009570: chloroplast stroma	2.27E-38
5	GO:0009941: chloroplast envelope	2.37E-28
6	GO:0009535: chloroplast thylakoid membrane	2.68E-24
7	GO:0009579: thylakoid	5.76E-18
8	GO:0009534: chloroplast thylakoid	1.12E-16
9	GO:0009543: chloroplast thylakoid lumen	1.36E-14
10	GO:0005840: ribosome	2.15E-14
11	GO:0031977: thylakoid lumen	6.94E-11
12	GO:0010007: magnesium chelatase complex	4.31E-08
13	GO:0016020: membrane	4.76E-06
14	GO:0009654: photosystem II oxygen evolving complex	1.68E-04
15	GO:0009547: plastid ribosome	3.42E-04
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.42E-04
17	GO:0019898: extrinsic component of membrane	4.57E-04
18	GO:0080085: signal recognition particle, chloroplast targeting	7.45E-04
19	GO:0032040: small-subunit processome	9.79E-04
20	GO:0031969: chloroplast membrane	1.23E-03
21	GO:0030095: chloroplast photosystem II	1.25E-03
22	GO:0005618: cell wall	1.30E-03
23	GO:0015630: microtubule cytoskeleton	1.74E-03
24	GO:0005719: nuclear euchromatin	1.74E-03
25	GO:0042651: thylakoid membrane	1.90E-03
26	GO:0015935: small ribosomal subunit	2.09E-03
27	GO:0046658: anchored component of plasma membrane	3.00E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.68E-03
29	GO:0009536: plastid	3.84E-03
30	GO:0009523: photosystem II	3.94E-03
31	GO:0009986: cell surface	5.23E-03
32	GO:0009533: chloroplast stromal thylakoid	5.23E-03
33	GO:0010319: stromule	5.43E-03
34	GO:0012507: ER to Golgi transport vesicle membrane	6.08E-03
35	GO:0030529: intracellular ribonucleoprotein complex	6.10E-03
36	GO:0048046: apoplast	6.61E-03
37	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.98E-03
38	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.91E-03
39	GO:0015030: Cajal body	8.89E-03
40	GO:0090404: pollen tube tip	1.10E-02
41	GO:0000311: plastid large ribosomal subunit	1.21E-02
42	GO:0000312: plastid small ribosomal subunit	1.44E-02
43	GO:0022625: cytosolic large ribosomal subunit	2.32E-02
44	GO:0015629: actin cytoskeleton	2.37E-02
45	GO:0009706: chloroplast inner membrane	2.52E-02
46	GO:0005871: kinesin complex	2.66E-02
47	GO:0010287: plastoglobule	2.99E-02
48	GO:0043231: intracellular membrane-bounded organelle	3.99E-02
49	GO:0009295: nucleoid	4.12E-02
50	GO:0031225: anchored component of membrane	4.33E-02