co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
8	GO:0006573: valine metabolic process	0.00E+00
9	GO:0006412: translation	1.33E-10
10	GO:0015979: photosynthesis	3.02E-08
11	GO:0015976: carbon utilization	4.51E-07
12	GO:0009735: response to cytokinin	9.68E-07
13	GO:0042254: ribosome biogenesis	1.34E-06
14	GO:0032544: plastid translation	1.20E-05
15	GO:2000122: negative regulation of stomatal complex development	6.10E-05
16	GO:0006546: glycine catabolic process	6.10E-05
17	GO:0010037: response to carbon dioxide	6.10E-05
18	GO:0009658: chloroplast organization	1.14E-04
19	GO:0042742: defense response to bacterium	1.36E-04
20	GO:0010190: cytochrome b6f complex assembly	1.39E-04
21	GO:0000413: protein peptidyl-prolyl isomerization	2.77E-04
22	GO:0045454: cell redox homeostasis	2.81E-04
23	GO:0071588: hydrogen peroxide mediated signaling pathway	3.07E-04
24	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.07E-04
25	GO:0060627: regulation of vesicle-mediated transport	3.07E-04
26	GO:0010597: green leaf volatile biosynthetic process	3.07E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	3.07E-04
28	GO:1901599: (-)-pinoresinol biosynthetic process	3.07E-04
29	GO:1904964: positive regulation of phytol biosynthetic process	3.07E-04
30	GO:0006551: leucine metabolic process	3.07E-04
31	GO:0042371: vitamin K biosynthetic process	3.07E-04
32	GO:0009657: plastid organization	3.84E-04
33	GO:0010027: thylakoid membrane organization	6.52E-04
34	GO:2000123: positive regulation of stomatal complex development	6.71E-04
35	GO:0043039: tRNA aminoacylation	6.71E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.71E-04
37	GO:0044208: 'de novo' AMP biosynthetic process	6.71E-04
38	GO:0009773: photosynthetic electron transport in photosystem I	7.36E-04
39	GO:0006415: translational termination	7.36E-04
40	GO:0018119: peptidyl-cysteine S-nitrosylation	7.36E-04
41	GO:0010020: chloroplast fission	1.07E-03
42	GO:0006065: UDP-glucuronate biosynthetic process	1.09E-03
43	GO:0090506: axillary shoot meristem initiation	1.09E-03
44	GO:0006518: peptide metabolic process	1.09E-03
45	GO:0071492: cellular response to UV-A	1.09E-03
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.56E-03
47	GO:0007231: osmosensory signaling pathway	1.56E-03
48	GO:0051016: barbed-end actin filament capping	1.56E-03
49	GO:0006424: glutamyl-tRNA aminoacylation	1.56E-03
50	GO:0043572: plastid fission	1.56E-03
51	GO:0006418: tRNA aminoacylation for protein translation	1.62E-03
52	GO:0061077: chaperone-mediated protein folding	1.78E-03
53	GO:0071486: cellular response to high light intensity	2.09E-03
54	GO:0019464: glycine decarboxylation via glycine cleavage system	2.09E-03
55	GO:0009765: photosynthesis, light harvesting	2.09E-03
56	GO:0033500: carbohydrate homeostasis	2.09E-03
57	GO:2000038: regulation of stomatal complex development	2.09E-03
58	GO:0034440: lipid oxidation	2.09E-03
59	GO:0006461: protein complex assembly	2.67E-03
60	GO:0016123: xanthophyll biosynthetic process	2.67E-03
61	GO:0010375: stomatal complex patterning	2.67E-03
62	GO:0016120: carotene biosynthetic process	2.67E-03
63	GO:0032543: mitochondrial translation	2.67E-03
64	GO:0042549: photosystem II stabilization	3.30E-03
65	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.30E-03
66	GO:0016554: cytidine to uridine editing	3.30E-03
67	GO:0071554: cell wall organization or biogenesis	3.59E-03
68	GO:0009793: embryo development ending in seed dormancy	3.87E-03
69	GO:0048444: floral organ morphogenesis	3.97E-03
70	GO:0010555: response to mannitol	3.97E-03
71	GO:0009955: adaxial/abaxial pattern specification	3.97E-03
72	GO:0010067: procambium histogenesis	3.97E-03
73	GO:0009082: branched-chain amino acid biosynthetic process	3.97E-03
74	GO:0006694: steroid biosynthetic process	3.97E-03
75	GO:1901259: chloroplast rRNA processing	3.97E-03
76	GO:0009099: valine biosynthetic process	3.97E-03
77	GO:0010019: chloroplast-nucleus signaling pathway	3.97E-03
78	GO:0006810: transport	3.98E-03
79	GO:0007267: cell-cell signaling	4.62E-03
80	GO:0050790: regulation of catalytic activity	4.68E-03
81	GO:0080027: response to herbivore	4.68E-03
82	GO:0051693: actin filament capping	4.68E-03
83	GO:0010196: nonphotochemical quenching	4.68E-03
84	GO:0030091: protein repair	5.44E-03
85	GO:0009642: response to light intensity	5.44E-03
86	GO:0000028: ribosomal small subunit assembly	5.44E-03
87	GO:0055114: oxidation-reduction process	5.97E-03
88	GO:0015995: chlorophyll biosynthetic process	6.11E-03
89	GO:0017004: cytochrome complex assembly	6.23E-03
90	GO:0009808: lignin metabolic process	6.23E-03
91	GO:0009097: isoleucine biosynthetic process	6.23E-03
92	GO:0006526: arginine biosynthetic process	6.23E-03
93	GO:0009817: defense response to fungus, incompatible interaction	6.77E-03
94	GO:0018298: protein-chromophore linkage	6.77E-03
95	GO:0000902: cell morphogenesis	7.07E-03
96	GO:0010206: photosystem II repair	7.07E-03
97	GO:0006189: 'de novo' IMP biosynthetic process	7.07E-03
98	GO:0045490: pectin catabolic process	7.73E-03
99	GO:0010119: regulation of stomatal movement	7.83E-03
100	GO:0006779: porphyrin-containing compound biosynthetic process	7.94E-03
101	GO:1900865: chloroplast RNA modification	7.94E-03
102	GO:0006949: syncytium formation	8.84E-03
103	GO:0006782: protoporphyrinogen IX biosynthetic process	8.84E-03
104	GO:0043069: negative regulation of programmed cell death	8.84E-03
105	GO:0034599: cellular response to oxidative stress	8.98E-03
106	GO:0006816: calcium ion transport	9.79E-03
107	GO:0043085: positive regulation of catalytic activity	9.79E-03
108	GO:0009807: lignan biosynthetic process	9.79E-03
109	GO:0009409: response to cold	1.00E-02
110	GO:0045037: protein import into chloroplast stroma	1.08E-02
111	GO:0030036: actin cytoskeleton organization	1.18E-02
112	GO:0050826: response to freezing	1.18E-02
113	GO:0010075: regulation of meristem growth	1.18E-02
114	GO:0009644: response to high light intensity	1.20E-02
115	GO:0009934: regulation of meristem structural organization	1.28E-02
116	GO:0010143: cutin biosynthetic process	1.28E-02
117	GO:0010207: photosystem II assembly	1.28E-02
118	GO:0007015: actin filament organization	1.28E-02
119	GO:0010223: secondary shoot formation	1.28E-02
120	GO:0070588: calcium ion transmembrane transport	1.39E-02
121	GO:0019762: glucosinolate catabolic process	1.50E-02
122	GO:0006813: potassium ion transport	1.50E-02
123	GO:0006636: unsaturated fatty acid biosynthetic process	1.50E-02
124	GO:0019344: cysteine biosynthetic process	1.62E-02
125	GO:0000027: ribosomal large subunit assembly	1.62E-02
126	GO:0010073: meristem maintenance	1.74E-02
127	GO:0051302: regulation of cell division	1.74E-02
128	GO:0009695: jasmonic acid biosynthetic process	1.74E-02
129	GO:0009768: photosynthesis, light harvesting in photosystem I	1.74E-02
130	GO:0031408: oxylipin biosynthetic process	1.86E-02
131	GO:0006508: proteolysis	1.92E-02
132	GO:0019748: secondary metabolic process	1.98E-02
133	GO:0080092: regulation of pollen tube growth	1.98E-02
134	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.11E-02
135	GO:0010082: regulation of root meristem growth	2.11E-02
136	GO:0001944: vasculature development	2.11E-02
137	GO:0010089: xylem development	2.24E-02
138	GO:0019722: calcium-mediated signaling	2.24E-02
139	GO:0009306: protein secretion	2.24E-02
140	GO:0016117: carotenoid biosynthetic process	2.37E-02
141	GO:0010087: phloem or xylem histogenesis	2.50E-02
142	GO:0055085: transmembrane transport	2.54E-02
143	GO:0006520: cellular amino acid metabolic process	2.64E-02
144	GO:0006662: glycerol ether metabolic process	2.64E-02
145	GO:0016132: brassinosteroid biosynthetic process	3.07E-02
146	GO:0002229: defense response to oomycetes	3.07E-02
147	GO:0000302: response to reactive oxygen species	3.07E-02
148	GO:0009790: embryo development	3.13E-02
149	GO:0007264: small GTPase mediated signal transduction	3.21E-02
150	GO:0006633: fatty acid biosynthetic process	3.36E-02
151	GO:0006413: translational initiation	3.45E-02
152	GO:0019760: glucosinolate metabolic process	3.52E-02
153	GO:0009828: plant-type cell wall loosening	3.52E-02
154	GO:0010411: xyloglucan metabolic process	4.48E-02
155	GO:0048481: plant ovule development	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
8	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
9	GO:0019843: rRNA binding	1.33E-16
10	GO:0003735: structural constituent of ribosome	1.50E-13
11	GO:0051920: peroxiredoxin activity	2.54E-08
12	GO:0016209: antioxidant activity	9.03E-08
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.10E-05
14	GO:0016149: translation release factor activity, codon specific	3.40E-05
15	GO:0004089: carbonate dehydratase activity	5.74E-05
16	GO:0004018: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	3.07E-04
17	GO:0042349: guiding stereospecific synthesis activity	3.07E-04
18	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.07E-04
19	GO:0070626: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity	3.07E-04
20	GO:0004560: alpha-L-fucosidase activity	3.07E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.07E-04
22	GO:0080132: fatty acid alpha-hydroxylase activity	3.07E-04
23	GO:0004831: tyrosine-tRNA ligase activity	3.07E-04
24	GO:0003984: acetolactate synthase activity	3.07E-04
25	GO:0003747: translation release factor activity	4.63E-04
26	GO:0042389: omega-3 fatty acid desaturase activity	6.71E-04
27	GO:0004047: aminomethyltransferase activity	6.71E-04
28	GO:0016168: chlorophyll binding	6.99E-04
29	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.09E-03
30	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.09E-03
31	GO:0050734: hydroxycinnamoyltransferase activity	1.09E-03
32	GO:0002161: aminoacyl-tRNA editing activity	1.09E-03
33	GO:0004148: dihydrolipoyl dehydrogenase activity	1.09E-03
34	GO:0030267: glyoxylate reductase (NADP) activity	1.09E-03
35	GO:0016165: linoleate 13S-lipoxygenase activity	1.09E-03
36	GO:0005528: FK506 binding	1.47E-03
37	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.56E-03
38	GO:0008324: cation transmembrane transporter activity	1.62E-03
39	GO:0033612: receptor serine/threonine kinase binding	1.78E-03
40	GO:0004659: prenyltransferase activity	2.09E-03
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.09E-03
42	GO:0043495: protein anchor	2.09E-03
43	GO:0022891: substrate-specific transmembrane transporter activity	2.12E-03
44	GO:0030570: pectate lyase activity	2.12E-03
45	GO:0004812: aminoacyl-tRNA ligase activity	2.50E-03
46	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.67E-03
47	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.67E-03
48	GO:0004601: peroxidase activity	2.98E-03
49	GO:0004130: cytochrome-c peroxidase activity	3.30E-03
50	GO:0016688: L-ascorbate peroxidase activity	3.30E-03
51	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.97E-03
52	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.97E-03
53	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.97E-03
54	GO:0019900: kinase binding	3.97E-03
55	GO:0019899: enzyme binding	4.68E-03
56	GO:0016413: O-acetyltransferase activity	4.90E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	5.44E-03
58	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.23E-03
59	GO:0004222: metalloendopeptidase activity	7.47E-03
60	GO:0003924: GTPase activity	7.48E-03
61	GO:0030145: manganese ion binding	7.83E-03
62	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	7.83E-03
63	GO:0009055: electron carrier activity	8.32E-03
64	GO:0030234: enzyme regulator activity	8.84E-03
65	GO:0008047: enzyme activator activity	8.84E-03
66	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.79E-03
67	GO:0008794: arsenate reductase (glutaredoxin) activity	9.79E-03
68	GO:0042802: identical protein binding	1.05E-02
69	GO:0000049: tRNA binding	1.08E-02
70	GO:0004185: serine-type carboxypeptidase activity	1.11E-02
71	GO:0031072: heat shock protein binding	1.18E-02
72	GO:0005262: calcium channel activity	1.18E-02
73	GO:0004565: beta-galactosidase activity	1.18E-02
74	GO:0051537: 2 iron, 2 sulfur cluster binding	1.20E-02
75	GO:0051287: NAD binding	1.35E-02
76	GO:0031409: pigment binding	1.50E-02
77	GO:0043424: protein histidine kinase binding	1.74E-02
78	GO:0045735: nutrient reservoir activity	1.78E-02
79	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.83E-02
80	GO:0004176: ATP-dependent peptidase activity	1.86E-02
81	GO:0030599: pectinesterase activity	2.01E-02
82	GO:0015035: protein disulfide oxidoreductase activity	2.20E-02
83	GO:0005102: receptor binding	2.37E-02
84	GO:0047134: protein-disulfide reductase activity	2.37E-02
85	GO:0016740: transferase activity	2.39E-02
86	GO:0005199: structural constituent of cell wall	2.64E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	2.78E-02
88	GO:0019901: protein kinase binding	2.92E-02
89	GO:0048038: quinone binding	3.07E-02
90	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.07E-02
91	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.36E-02
92	GO:0051015: actin filament binding	3.36E-02
93	GO:0016759: cellulose synthase activity	3.52E-02
94	GO:0008483: transaminase activity	3.67E-02
95	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.67E-02
96	GO:0008237: metallopeptidase activity	3.67E-02
97	GO:0005525: GTP binding	3.70E-02
98	GO:0016597: amino acid binding	3.83E-02
99	GO:0003743: translation initiation factor activity	4.31E-02
100	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.31E-02
101	GO:0005509: calcium ion binding	4.44E-02
102	GO:0004683: calmodulin-dependent protein kinase activity	4.48E-02
103	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.48E-02
104	GO:0008236: serine-type peptidase activity	4.64E-02
105	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	4.49E-42
4	GO:0009570: chloroplast stroma	4.62E-34
5	GO:0009941: chloroplast envelope	9.90E-30
6	GO:0009535: chloroplast thylakoid membrane	2.17E-25
7	GO:0009579: thylakoid	3.88E-16
8	GO:0009543: chloroplast thylakoid lumen	1.56E-13
9	GO:0031977: thylakoid lumen	8.22E-13
10	GO:0005840: ribosome	1.09E-10
11	GO:0048046: apoplast	2.16E-09
12	GO:0009534: chloroplast thylakoid	3.58E-09
13	GO:0000311: plastid large ribosomal subunit	1.10E-06
14	GO:0009654: photosystem II oxygen evolving complex	5.32E-06
15	GO:0009505: plant-type cell wall	1.25E-05
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.67E-05
17	GO:0030095: chloroplast photosystem II	6.96E-05
18	GO:0015934: large ribosomal subunit	1.31E-04
19	GO:0009533: chloroplast stromal thylakoid	2.48E-04
20	GO:0009547: plastid ribosome	3.07E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.07E-04
22	GO:0019898: extrinsic component of membrane	3.71E-04
23	GO:0009523: photosystem II	3.71E-04
24	GO:0010319: stromule	5.63E-04
25	GO:0009706: chloroplast inner membrane	6.70E-04
26	GO:0008290: F-actin capping protein complex	6.71E-04
27	GO:0042170: plastid membrane	6.71E-04
28	GO:0005618: cell wall	8.05E-04
29	GO:0031012: extracellular matrix	9.50E-04
30	GO:0000312: plastid small ribosomal subunit	1.07E-03
31	GO:0005960: glycine cleavage complex	1.56E-03
32	GO:0042651: thylakoid membrane	1.62E-03
33	GO:0016020: membrane	2.26E-03
34	GO:0046658: anchored component of plasma membrane	2.35E-03
35	GO:0010168: ER body	3.30E-03
36	GO:0005576: extracellular region	3.37E-03
37	GO:0022626: cytosolic ribosome	4.67E-03
38	GO:0009539: photosystem II reaction center	6.23E-03
39	GO:0005763: mitochondrial small ribosomal subunit	7.07E-03
40	GO:0009536: plastid	8.25E-03
41	GO:0016324: apical plasma membrane	8.84E-03
42	GO:0005884: actin filament	9.79E-03
43	GO:0031225: anchored component of membrane	1.09E-02
44	GO:0030076: light-harvesting complex	1.39E-02
45	GO:0005875: microtubule associated complex	1.50E-02
46	GO:0031969: chloroplast membrane	1.77E-02
47	GO:0015935: small ribosomal subunit	1.86E-02
48	GO:0009532: plastid stroma	1.86E-02
49	GO:0022625: cytosolic large ribosomal subunit	1.89E-02
50	GO:0010287: plastoglobule	2.54E-02
51	GO:0009522: photosystem I	2.78E-02
52	GO:0005615: extracellular space	4.13E-02
53	GO:0022627: cytosolic small ribosomal subunit	4.87E-02