co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043201: response to leucine	0.00E+00
2	GO:0080053: response to phenylalanine	0.00E+00
3	GO:0010360: negative regulation of anion channel activity	0.00E+00
4	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
5	GO:0080052: response to histidine	0.00E+00
6	GO:0006983: ER overload response	0.00E+00
7	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
8	GO:0033587: shikimate biosynthetic process	0.00E+00
9	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
10	GO:0019835: cytolysis	0.00E+00
11	GO:0006182: cGMP biosynthetic process	0.00E+00
12	GO:0006592: ornithine biosynthetic process	0.00E+00
13	GO:0071456: cellular response to hypoxia	4.93E-07
14	GO:0009617: response to bacterium	1.76E-05
15	GO:0043069: negative regulation of programmed cell death	4.92E-05
16	GO:0006468: protein phosphorylation	8.60E-05
17	GO:0042742: defense response to bacterium	9.61E-05
18	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	3.84E-04
19	GO:0006481: C-terminal protein methylation	3.84E-04
20	GO:0010941: regulation of cell death	3.84E-04
21	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.84E-04
22	GO:0010036: response to boron-containing substance	3.84E-04
23	GO:1902361: mitochondrial pyruvate transmembrane transport	3.84E-04
24	GO:1903648: positive regulation of chlorophyll catabolic process	3.84E-04
25	GO:0035266: meristem growth	3.84E-04
26	GO:0007292: female gamete generation	3.84E-04
27	GO:0051245: negative regulation of cellular defense response	3.84E-04
28	GO:0030091: protein repair	4.35E-04
29	GO:0010150: leaf senescence	5.29E-04
30	GO:0010120: camalexin biosynthetic process	5.32E-04
31	GO:0043562: cellular response to nitrogen levels	5.32E-04
32	GO:0010112: regulation of systemic acquired resistance	6.38E-04
33	GO:0080029: cellular response to boron-containing substance levels	8.33E-04
34	GO:0006672: ceramide metabolic process	8.33E-04
35	GO:0006212: uracil catabolic process	8.33E-04
36	GO:0051788: response to misfolded protein	8.33E-04
37	GO:0044419: interspecies interaction between organisms	8.33E-04
38	GO:0043066: negative regulation of apoptotic process	8.33E-04
39	GO:0019483: beta-alanine biosynthetic process	8.33E-04
40	GO:0006850: mitochondrial pyruvate transport	8.33E-04
41	GO:0015865: purine nucleotide transport	8.33E-04
42	GO:0042939: tripeptide transport	8.33E-04
43	GO:0052542: defense response by callose deposition	8.33E-04
44	GO:0019441: tryptophan catabolic process to kynurenine	8.33E-04
45	GO:0009838: abscission	8.33E-04
46	GO:0055114: oxidation-reduction process	8.88E-04
47	GO:0009682: induced systemic resistance	1.01E-03
48	GO:0010359: regulation of anion channel activity	1.35E-03
49	GO:0051176: positive regulation of sulfur metabolic process	1.35E-03
50	GO:0060968: regulation of gene silencing	1.35E-03
51	GO:0008219: cell death	1.37E-03
52	GO:0002237: response to molecule of bacterial origin	1.47E-03
53	GO:0010200: response to chitin	1.77E-03
54	GO:0046902: regulation of mitochondrial membrane permeability	1.95E-03
55	GO:0072334: UDP-galactose transmembrane transport	1.95E-03
56	GO:0009399: nitrogen fixation	1.95E-03
57	GO:0006612: protein targeting to membrane	1.95E-03
58	GO:0015700: arsenite transport	1.95E-03
59	GO:0001676: long-chain fatty acid metabolic process	1.95E-03
60	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.95E-03
61	GO:0046713: borate transport	1.95E-03
62	GO:0048194: Golgi vesicle budding	1.95E-03
63	GO:0051707: response to other organism	2.56E-03
64	GO:0006536: glutamate metabolic process	2.62E-03
65	GO:0010363: regulation of plant-type hypersensitive response	2.62E-03
66	GO:0080142: regulation of salicylic acid biosynthetic process	2.62E-03
67	GO:0042938: dipeptide transport	2.62E-03
68	GO:0006542: glutamine biosynthetic process	2.62E-03
69	GO:0010227: floral organ abscission	2.95E-03
70	GO:0034052: positive regulation of plant-type hypersensitive response	3.35E-03
71	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	3.35E-03
72	GO:0000304: response to singlet oxygen	3.35E-03
73	GO:0009697: salicylic acid biosynthetic process	3.35E-03
74	GO:0042538: hyperosmotic salinity response	3.43E-03
75	GO:0006979: response to oxidative stress	3.64E-03
76	GO:1902456: regulation of stomatal opening	4.14E-03
77	GO:1900425: negative regulation of defense response to bacterium	4.14E-03
78	GO:0010337: regulation of salicylic acid metabolic process	4.14E-03
79	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.14E-03
80	GO:0006561: proline biosynthetic process	4.14E-03
81	GO:0010942: positive regulation of cell death	4.14E-03
82	GO:0048827: phyllome development	4.14E-03
83	GO:0016070: RNA metabolic process	4.14E-03
84	GO:0010256: endomembrane system organization	4.14E-03
85	GO:0048232: male gamete generation	4.14E-03
86	GO:0043248: proteasome assembly	4.14E-03
87	GO:0098655: cation transmembrane transport	4.99E-03
88	GO:0009626: plant-type hypersensitive response	5.03E-03
89	GO:0070370: cellular heat acclimation	5.89E-03
90	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	5.89E-03
91	GO:1900057: positive regulation of leaf senescence	5.89E-03
92	GO:0050829: defense response to Gram-negative bacterium	5.89E-03
93	GO:1902074: response to salt	5.89E-03
94	GO:0006955: immune response	5.89E-03
95	GO:1900056: negative regulation of leaf senescence	5.89E-03
96	GO:0010252: auxin homeostasis	6.06E-03
97	GO:0009061: anaerobic respiration	6.85E-03
98	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	6.85E-03
99	GO:1900150: regulation of defense response to fungus	6.85E-03
100	GO:0010078: maintenance of root meristem identity	6.85E-03
101	GO:2000070: regulation of response to water deprivation	6.85E-03
102	GO:0009816: defense response to bacterium, incompatible interaction	7.65E-03
103	GO:0009607: response to biotic stimulus	7.65E-03
104	GO:0009657: plastid organization	7.86E-03
105	GO:0006526: arginine biosynthetic process	7.86E-03
106	GO:0010204: defense response signaling pathway, resistance gene-independent	7.86E-03
107	GO:0009808: lignin metabolic process	7.86E-03
108	GO:0006098: pentose-phosphate shunt	8.92E-03
109	GO:0009821: alkaloid biosynthetic process	8.92E-03
110	GO:0007338: single fertilization	8.92E-03
111	GO:0046685: response to arsenic-containing substance	8.92E-03
112	GO:0046686: response to cadmium ion	9.32E-03
113	GO:0009817: defense response to fungus, incompatible interaction	9.46E-03
114	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.00E-02
115	GO:0008202: steroid metabolic process	1.00E-02
116	GO:0071577: zinc II ion transmembrane transport	1.00E-02
117	GO:0009407: toxin catabolic process	1.04E-02
118	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.12E-02
119	GO:0048829: root cap development	1.12E-02
120	GO:0032259: methylation	1.16E-02
121	GO:0045087: innate immune response	1.20E-02
122	GO:0009751: response to salicylic acid	1.21E-02
123	GO:0052544: defense response by callose deposition in cell wall	1.24E-02
124	GO:0009089: lysine biosynthetic process via diaminopimelate	1.24E-02
125	GO:0010015: root morphogenesis	1.24E-02
126	GO:0000038: very long-chain fatty acid metabolic process	1.24E-02
127	GO:0006952: defense response	1.30E-02
128	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.36E-02
129	GO:0000266: mitochondrial fission	1.37E-02
130	GO:0007166: cell surface receptor signaling pathway	1.40E-02
131	GO:0006631: fatty acid metabolic process	1.43E-02
132	GO:0010102: lateral root morphogenesis	1.49E-02
133	GO:0006807: nitrogen compound metabolic process	1.49E-02
134	GO:0042542: response to hydrogen peroxide	1.49E-02
135	GO:0055046: microgametogenesis	1.49E-02
136	GO:0009718: anthocyanin-containing compound biosynthetic process	1.49E-02
137	GO:0034605: cellular response to heat	1.63E-02
138	GO:0009933: meristem structural organization	1.63E-02
139	GO:0009266: response to temperature stimulus	1.63E-02
140	GO:0009636: response to toxic substance	1.75E-02
141	GO:0010167: response to nitrate	1.77E-02
142	GO:0090351: seedling development	1.77E-02
143	GO:0070588: calcium ion transmembrane transport	1.77E-02
144	GO:0010053: root epidermal cell differentiation	1.77E-02
145	GO:0000162: tryptophan biosynthetic process	1.91E-02
146	GO:0006812: cation transport	1.95E-02
147	GO:0009863: salicylic acid mediated signaling pathway	2.05E-02
148	GO:0080147: root hair cell development	2.05E-02
149	GO:0005992: trehalose biosynthetic process	2.05E-02
150	GO:0009809: lignin biosynthetic process	2.10E-02
151	GO:0006813: potassium ion transport	2.10E-02
152	GO:0006874: cellular calcium ion homeostasis	2.20E-02
153	GO:0048278: vesicle docking	2.36E-02
154	GO:0031408: oxylipin biosynthetic process	2.36E-02
155	GO:0016998: cell wall macromolecule catabolic process	2.36E-02
156	GO:0009814: defense response, incompatible interaction	2.51E-02
157	GO:0016226: iron-sulfur cluster assembly	2.51E-02
158	GO:0030433: ubiquitin-dependent ERAD pathway	2.51E-02
159	GO:0048367: shoot system development	2.56E-02
160	GO:0071369: cellular response to ethylene stimulus	2.67E-02
161	GO:0009620: response to fungus	2.73E-02
162	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.81E-02
163	GO:0009561: megagametogenesis	2.84E-02
164	GO:0010584: pollen exine formation	2.84E-02
165	GO:0046777: protein autophosphorylation	2.93E-02
166	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.01E-02
167	GO:0016117: carotenoid biosynthetic process	3.01E-02
168	GO:0042391: regulation of membrane potential	3.18E-02
169	GO:0006885: regulation of pH	3.35E-02
170	GO:0071472: cellular response to salt stress	3.35E-02
171	GO:0045454: cell redox homeostasis	3.37E-02
172	GO:0048544: recognition of pollen	3.53E-02
173	GO:0061025: membrane fusion	3.53E-02
174	GO:0042752: regulation of circadian rhythm	3.53E-02
175	GO:0050832: defense response to fungus	3.56E-02
176	GO:0009749: response to glucose	3.71E-02
177	GO:0009851: auxin biosynthetic process	3.71E-02
178	GO:0002229: defense response to oomycetes	3.89E-02
179	GO:0000302: response to reactive oxygen species	3.89E-02
180	GO:0010193: response to ozone	3.89E-02
181	GO:0009630: gravitropism	4.08E-02
182	GO:0009737: response to abscisic acid	4.40E-02
183	GO:0006464: cellular protein modification process	4.46E-02
184	GO:0009567: double fertilization forming a zygote and endosperm	4.46E-02
185	GO:0071805: potassium ion transmembrane transport	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
2	GO:0008777: acetylornithine deacetylase activity	0.00E+00
3	GO:0080138: borate uptake transmembrane transporter activity	0.00E+00
4	GO:0003837: beta-ureidopropionase activity	0.00E+00
5	GO:0016301: kinase activity	3.31E-06
6	GO:0004674: protein serine/threonine kinase activity	6.84E-06
7	GO:0005516: calmodulin binding	3.25E-05
8	GO:0010279: indole-3-acetic acid amido synthetase activity	8.90E-05
9	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.32E-04
10	GO:0009055: electron carrier activity	2.39E-04
11	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.69E-04
12	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	3.84E-04
13	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	3.84E-04
14	GO:0010285: L,L-diaminopimelate aminotransferase activity	3.84E-04
15	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	3.84E-04
16	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.84E-04
17	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.84E-04
18	GO:0071949: FAD binding	6.38E-04
19	GO:0032934: sterol binding	8.33E-04
20	GO:0004061: arylformamidase activity	8.33E-04
21	GO:0042937: tripeptide transporter activity	8.33E-04
22	GO:0015105: arsenite transmembrane transporter activity	8.33E-04
23	GO:0004713: protein tyrosine kinase activity	8.76E-04
24	GO:0008171: O-methyltransferase activity	8.76E-04
25	GO:0051213: dioxygenase activity	9.84E-04
26	GO:0005524: ATP binding	1.03E-03
27	GO:0000975: regulatory region DNA binding	1.35E-03
28	GO:0050833: pyruvate transmembrane transporter activity	1.35E-03
29	GO:0004383: guanylate cyclase activity	1.35E-03
30	GO:0016595: glutamate binding	1.35E-03
31	GO:0050660: flavin adenine dinucleotide binding	1.47E-03
32	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.85E-03
33	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.95E-03
34	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.95E-03
35	GO:0046715: borate transmembrane transporter activity	1.95E-03
36	GO:0000339: RNA cap binding	1.95E-03
37	GO:0004351: glutamate decarboxylase activity	1.95E-03
38	GO:0008276: protein methyltransferase activity	1.95E-03
39	GO:0004364: glutathione transferase activity	2.43E-03
40	GO:0009916: alternative oxidase activity	2.62E-03
41	GO:0004834: tryptophan synthase activity	2.62E-03
42	GO:0042936: dipeptide transporter activity	2.62E-03
43	GO:0005459: UDP-galactose transmembrane transporter activity	3.35E-03
44	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	3.35E-03
45	GO:0005496: steroid binding	3.35E-03
46	GO:0031386: protein tag	3.35E-03
47	GO:0005471: ATP:ADP antiporter activity	3.35E-03
48	GO:0004356: glutamate-ammonia ligase activity	3.35E-03
49	GO:0045431: flavonol synthase activity	3.35E-03
50	GO:0036402: proteasome-activating ATPase activity	4.14E-03
51	GO:0004866: endopeptidase inhibitor activity	4.14E-03
52	GO:0004526: ribonuclease P activity	4.14E-03
53	GO:0102391: decanoate--CoA ligase activity	4.99E-03
54	GO:0004012: phospholipid-translocating ATPase activity	4.99E-03
55	GO:0004656: procollagen-proline 4-dioxygenase activity	4.99E-03
56	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	4.99E-03
57	GO:0051920: peroxiredoxin activity	4.99E-03
58	GO:0008121: ubiquinol-cytochrome-c reductase activity	5.89E-03
59	GO:0004467: long-chain fatty acid-CoA ligase activity	5.89E-03
60	GO:0102425: myricetin 3-O-glucosyltransferase activity	5.89E-03
61	GO:0102360: daphnetin 3-O-glucosyltransferase activity	5.89E-03
62	GO:0015035: protein disulfide oxidoreductase activity	6.11E-03
63	GO:0008483: transaminase activity	6.44E-03
64	GO:0047893: flavonol 3-O-glucosyltransferase activity	6.85E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	6.85E-03
66	GO:0016209: antioxidant activity	6.85E-03
67	GO:0008142: oxysterol binding	7.86E-03
68	GO:0030247: polysaccharide binding	8.53E-03
69	GO:0004683: calmodulin-dependent protein kinase activity	8.53E-03
70	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	8.99E-03
71	GO:0030955: potassium ion binding	1.00E-02
72	GO:0004743: pyruvate kinase activity	1.00E-02
73	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.08E-02
74	GO:0030145: manganese ion binding	1.10E-02
75	GO:0008047: enzyme activator activity	1.12E-02
76	GO:0005543: phospholipid binding	1.24E-02
77	GO:0008794: arsenate reductase (glutaredoxin) activity	1.24E-02
78	GO:0004177: aminopeptidase activity	1.24E-02
79	GO:0005388: calcium-transporting ATPase activity	1.49E-02
80	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.49E-02
81	GO:0017025: TBP-class protein binding	1.77E-02
82	GO:0005217: intracellular ligand-gated ion channel activity	1.77E-02
83	GO:0004970: ionotropic glutamate receptor activity	1.77E-02
84	GO:0030552: cAMP binding	1.77E-02
85	GO:0030553: cGMP binding	1.77E-02
86	GO:0008168: methyltransferase activity	1.96E-02
87	GO:0031418: L-ascorbic acid binding	2.05E-02
88	GO:0005385: zinc ion transmembrane transporter activity	2.05E-02
89	GO:0003954: NADH dehydrogenase activity	2.05E-02
90	GO:0005216: ion channel activity	2.20E-02
91	GO:0015079: potassium ion transmembrane transporter activity	2.20E-02
92	GO:0008324: cation transmembrane transporter activity	2.20E-02
93	GO:0004672: protein kinase activity	2.22E-02
94	GO:0035251: UDP-glucosyltransferase activity	2.36E-02
95	GO:0020037: heme binding	2.54E-02
96	GO:0005509: calcium ion binding	2.64E-02
97	GO:0004497: monooxygenase activity	2.70E-02
98	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.84E-02
99	GO:0005102: receptor binding	3.01E-02
100	GO:0030551: cyclic nucleotide binding	3.18E-02
101	GO:0005451: monovalent cation:proton antiporter activity	3.18E-02
102	GO:0005249: voltage-gated potassium channel activity	3.18E-02
103	GO:0046873: metal ion transmembrane transporter activity	3.35E-02
104	GO:0015299: solute:proton antiporter activity	3.53E-02
105	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.71E-02
106	GO:0030170: pyridoxal phosphate binding	4.14E-02
107	GO:0015385: sodium:proton antiporter activity	4.27E-02
108	GO:0008237: metallopeptidase activity	4.66E-02
109	GO:0016597: amino acid binding	4.85E-02
110	GO:0043565: sequence-specific DNA binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0046862: chromoplast membrane	0.00E+00
2	GO:0005886: plasma membrane	6.31E-08
3	GO:0016021: integral component of membrane	2.21E-06
4	GO:0005783: endoplasmic reticulum	5.07E-05
5	GO:0031304: intrinsic component of mitochondrial inner membrane	8.33E-04
6	GO:0016328: lateral plasma membrane	1.35E-03
7	GO:0031597: cytosolic proteasome complex	4.99E-03
8	GO:0030173: integral component of Golgi membrane	4.99E-03
9	GO:0031595: nuclear proteasome complex	5.89E-03
10	GO:0031305: integral component of mitochondrial inner membrane	6.85E-03
11	GO:0008540: proteasome regulatory particle, base subcomplex	1.00E-02
12	GO:0005750: mitochondrial respiratory chain complex III	1.63E-02
13	GO:0030176: integral component of endoplasmic reticulum membrane	1.77E-02
14	GO:0070469: respiratory chain	2.20E-02
15	GO:0005829: cytosol	2.62E-02
16	GO:0005770: late endosome	3.35E-02
17	GO:0016020: membrane	4.89E-02