co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
2	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
3	GO:0070584: mitochondrion morphogenesis	0.00E+00
4	GO:0012502: induction of programmed cell death	0.00E+00
5	GO:0010378: temperature compensation of the circadian clock	0.00E+00
6	GO:0030644: cellular chloride ion homeostasis	0.00E+00
7	GO:0009768: photosynthesis, light harvesting in photosystem I	1.25E-21
8	GO:0018298: protein-chromophore linkage	1.16E-13
9	GO:0015979: photosynthesis	1.15E-12
10	GO:0009644: response to high light intensity	3.77E-09
11	GO:0009645: response to low light intensity stimulus	8.25E-09
12	GO:0010218: response to far red light	2.88E-08
13	GO:0009416: response to light stimulus	4.74E-07
14	GO:0009769: photosynthesis, light harvesting in photosystem II	1.39E-06
15	GO:0009637: response to blue light	1.55E-06
16	GO:0042542: response to hydrogen peroxide	2.73E-06
17	GO:0010114: response to red light	3.04E-06
18	GO:0009409: response to cold	3.63E-06
19	GO:0080167: response to karrikin	2.67E-05
20	GO:0007623: circadian rhythm	5.64E-05
21	GO:0010196: nonphotochemical quenching	1.07E-04
22	GO:0034472: snRNA 3'-end processing	1.77E-04
23	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.77E-04
24	GO:0010496: intercellular transport	1.77E-04
25	GO:0015812: gamma-aminobutyric acid transport	1.77E-04
26	GO:0032958: inositol phosphate biosynthetic process	1.77E-04
27	GO:0006355: regulation of transcription, DNA-templated	3.94E-04
28	GO:0006883: cellular sodium ion homeostasis	4.01E-04
29	GO:0090057: root radial pattern formation	4.01E-04
30	GO:0051170: nuclear import	4.01E-04
31	GO:1902884: positive regulation of response to oxidative stress	4.01E-04
32	GO:0042256: mature ribosome assembly	6.55E-04
33	GO:1902448: positive regulation of shade avoidance	6.55E-04
34	GO:1901562: response to paraquat	6.55E-04
35	GO:0008643: carbohydrate transport	6.98E-04
36	GO:0048511: rhythmic process	8.37E-04
37	GO:0010017: red or far-red light signaling pathway	9.13E-04
38	GO:0006020: inositol metabolic process	9.34E-04
39	GO:0010601: positive regulation of auxin biosynthetic process	9.34E-04
40	GO:0044211: CTP salvage	9.34E-04
41	GO:0031936: negative regulation of chromatin silencing	9.34E-04
42	GO:0050482: arachidonic acid secretion	9.34E-04
43	GO:0009765: photosynthesis, light harvesting	1.24E-03
44	GO:2000306: positive regulation of photomorphogenesis	1.24E-03
45	GO:0010600: regulation of auxin biosynthetic process	1.24E-03
46	GO:0010508: positive regulation of autophagy	1.24E-03
47	GO:0044206: UMP salvage	1.24E-03
48	GO:1901002: positive regulation of response to salt stress	1.24E-03
49	GO:0030104: water homeostasis	1.24E-03
50	GO:0006351: transcription, DNA-templated	1.25E-03
51	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.57E-03
52	GO:0043097: pyrimidine nucleoside salvage	1.57E-03
53	GO:0045962: positive regulation of development, heterochronic	1.94E-03
54	GO:0006206: pyrimidine nucleobase metabolic process	1.94E-03
55	GO:0009635: response to herbicide	1.94E-03
56	GO:0009408: response to heat	2.25E-03
57	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.32E-03
58	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.32E-03
59	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.32E-03
60	GO:0016126: sterol biosynthetic process	2.38E-03
61	GO:0010029: regulation of seed germination	2.51E-03
62	GO:0010038: response to metal ion	2.74E-03
63	GO:0010161: red light signaling pathway	2.74E-03
64	GO:1900056: negative regulation of leaf senescence	2.74E-03
65	GO:0048437: floral organ development	2.74E-03
66	GO:0080111: DNA demethylation	2.74E-03
67	GO:0015995: chlorophyll biosynthetic process	2.80E-03
68	GO:0009817: defense response to fungus, incompatible interaction	3.09E-03
69	GO:0006644: phospholipid metabolic process	3.17E-03
70	GO:0010928: regulation of auxin mediated signaling pathway	3.17E-03
71	GO:0010078: maintenance of root meristem identity	3.17E-03
72	GO:0009704: de-etiolation	3.17E-03
73	GO:0000160: phosphorelay signal transduction system	3.25E-03
74	GO:0010099: regulation of photomorphogenesis	3.63E-03
75	GO:0009827: plant-type cell wall modification	3.63E-03
76	GO:0007186: G-protein coupled receptor signaling pathway	3.63E-03
77	GO:0090333: regulation of stomatal closure	4.10E-03
78	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.60E-03
79	GO:0010380: regulation of chlorophyll biosynthetic process	4.60E-03
80	GO:0009735: response to cytokinin	4.69E-03
81	GO:0009640: photomorphogenesis	5.03E-03
82	GO:0009641: shade avoidance	5.11E-03
83	GO:0010162: seed dormancy process	5.11E-03
84	GO:0009970: cellular response to sulfate starvation	5.11E-03
85	GO:0006995: cellular response to nitrogen starvation	5.11E-03
86	GO:0055062: phosphate ion homeostasis	5.11E-03
87	GO:0018119: peptidyl-cysteine S-nitrosylation	5.65E-03
88	GO:0046856: phosphatidylinositol dephosphorylation	5.65E-03
89	GO:0035556: intracellular signal transduction	5.83E-03
90	GO:0016925: protein sumoylation	6.20E-03
91	GO:0005983: starch catabolic process	6.20E-03
92	GO:0042538: hyperosmotic salinity response	6.32E-03
93	GO:0050826: response to freezing	6.78E-03
94	GO:0009718: anthocyanin-containing compound biosynthetic process	6.78E-03
95	GO:0009767: photosynthetic electron transport chain	6.78E-03
96	GO:0009585: red, far-red light phototransduction	6.78E-03
97	GO:0009266: response to temperature stimulus	7.37E-03
98	GO:0010207: photosystem II assembly	7.37E-03
99	GO:0055085: transmembrane transport	7.71E-03
100	GO:0090351: seedling development	7.98E-03
101	GO:0019853: L-ascorbic acid biosynthetic process	7.98E-03
102	GO:0006874: cellular calcium ion homeostasis	9.92E-03
103	GO:0010431: seed maturation	1.06E-02
104	GO:0009269: response to desiccation	1.06E-02
105	GO:0003333: amino acid transmembrane transport	1.06E-02
106	GO:0006012: galactose metabolic process	1.20E-02
107	GO:0071215: cellular response to abscisic acid stimulus	1.20E-02
108	GO:0045492: xylan biosynthetic process	1.27E-02
109	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.35E-02
110	GO:0008284: positive regulation of cell proliferation	1.35E-02
111	GO:0009414: response to water deprivation	1.51E-02
112	GO:0007165: signal transduction	1.55E-02
113	GO:0006814: sodium ion transport	1.58E-02
114	GO:0042752: regulation of circadian rhythm	1.58E-02
115	GO:0009737: response to abscisic acid	1.61E-02
116	GO:0009556: microsporogenesis	1.66E-02
117	GO:0010228: vegetative to reproductive phase transition of meristem	1.75E-02
118	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.75E-02
119	GO:0000302: response to reactive oxygen species	1.75E-02
120	GO:1901657: glycosyl compound metabolic process	1.91E-02
121	GO:0010468: regulation of gene expression	2.00E-02
122	GO:0006914: autophagy	2.00E-02
123	GO:0010286: heat acclimation	2.09E-02
124	GO:0009738: abscisic acid-activated signaling pathway	2.11E-02
125	GO:0016579: protein deubiquitination	2.18E-02
126	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.36E-02
127	GO:0006950: response to stress	2.55E-02
128	GO:0006888: ER to Golgi vesicle-mediated transport	2.55E-02
129	GO:0048573: photoperiodism, flowering	2.55E-02
130	GO:0009658: chloroplast organization	2.60E-02
131	GO:0045893: positive regulation of transcription, DNA-templated	2.62E-02
132	GO:0048481: plant ovule development	2.74E-02
133	GO:0006810: transport	2.76E-02
134	GO:0007049: cell cycle	2.90E-02
135	GO:0006811: ion transport	2.94E-02
136	GO:0009910: negative regulation of flower development	3.04E-02
137	GO:0009631: cold acclimation	3.04E-02
138	GO:0010119: regulation of stomatal movement	3.04E-02
139	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.33E-02
140	GO:0006839: mitochondrial transport	3.56E-02
141	GO:0051707: response to other organism	3.88E-02
142	GO:0045892: negative regulation of transcription, DNA-templated	3.91E-02
143	GO:0006886: intracellular protein transport	3.97E-02
144	GO:0009965: leaf morphogenesis	4.22E-02
145	GO:0000165: MAPK cascade	4.45E-02
146	GO:0032259: methylation	4.53E-02
147	GO:0006812: cation transport	4.56E-02
148	GO:0016042: lipid catabolic process	4.60E-02
149	GO:0006629: lipid metabolic process	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
2	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
3	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0004567: beta-mannosidase activity	0.00E+00
8	GO:0080082: esculin beta-glucosidase activity	0.00E+00
9	GO:0031409: pigment binding	7.84E-20
10	GO:0016168: chlorophyll binding	4.70E-16
11	GO:0005515: protein binding	2.89E-06
12	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.77E-04
13	GO:0000829: inositol heptakisphosphate kinase activity	1.77E-04
14	GO:0080079: cellobiose glucosidase activity	1.77E-04
15	GO:0000828: inositol hexakisphosphate kinase activity	1.77E-04
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.77E-04
17	GO:0016630: protochlorophyllide reductase activity	4.01E-04
18	GO:0015180: L-alanine transmembrane transporter activity	4.01E-04
19	GO:0004565: beta-galactosidase activity	4.47E-04
20	GO:0046872: metal ion binding	4.92E-04
21	GO:0004096: catalase activity	6.55E-04
22	GO:0019948: SUMO activating enzyme activity	6.55E-04
23	GO:0017150: tRNA dihydrouridine synthase activity	6.55E-04
24	GO:0004707: MAP kinase activity	8.37E-04
25	GO:0015189: L-lysine transmembrane transporter activity	9.34E-04
26	GO:0000254: C-4 methylsterol oxidase activity	9.34E-04
27	GO:0015181: arginine transmembrane transporter activity	9.34E-04
28	GO:0004845: uracil phosphoribosyltransferase activity	1.24E-03
29	GO:0005313: L-glutamate transmembrane transporter activity	1.24E-03
30	GO:0004506: squalene monooxygenase activity	1.24E-03
31	GO:0004930: G-protein coupled receptor activity	1.24E-03
32	GO:0005253: anion channel activity	1.24E-03
33	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.57E-03
34	GO:0004623: phospholipase A2 activity	1.57E-03
35	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.57E-03
36	GO:0000156: phosphorelay response regulator activity	1.88E-03
37	GO:0005247: voltage-gated chloride channel activity	1.94E-03
38	GO:0004629: phospholipase C activity	1.94E-03
39	GO:0015562: efflux transmembrane transporter activity	1.94E-03
40	GO:0004556: alpha-amylase activity	1.94E-03
41	GO:0004849: uridine kinase activity	2.32E-03
42	GO:0004435: phosphatidylinositol phospholipase C activity	2.32E-03
43	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.36E-03
44	GO:0004564: beta-fructofuranosidase activity	3.17E-03
45	GO:0004033: aldo-keto reductase (NADP) activity	3.17E-03
46	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	3.63E-03
47	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.10E-03
48	GO:0000989: transcription factor activity, transcription factor binding	4.10E-03
49	GO:0003677: DNA binding	4.26E-03
50	GO:0004575: sucrose alpha-glucosidase activity	4.60E-03
51	GO:0005215: transporter activity	5.15E-03
52	GO:0047372: acylglycerol lipase activity	5.65E-03
53	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.20E-03
54	GO:0005315: inorganic phosphate transmembrane transporter activity	6.78E-03
55	GO:0005217: intracellular ligand-gated ion channel activity	7.98E-03
56	GO:0003712: transcription cofactor activity	7.98E-03
57	GO:0004970: ionotropic glutamate receptor activity	7.98E-03
58	GO:0051087: chaperone binding	9.92E-03
59	GO:0005216: ion channel activity	9.92E-03
60	GO:0008324: cation transmembrane transporter activity	9.92E-03
61	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.06E-02
62	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.06E-02
63	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.24E-02
64	GO:0008514: organic anion transmembrane transporter activity	1.27E-02
65	GO:0005509: calcium ion binding	1.38E-02
66	GO:0015297: antiporter activity	1.60E-02
67	GO:0016787: hydrolase activity	1.62E-02
68	GO:0005351: sugar:proton symporter activity	1.64E-02
69	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.75E-02
70	GO:0008168: methyltransferase activity	2.50E-02
71	GO:0102483: scopolin beta-glucosidase activity	2.55E-02
72	GO:0004672: protein kinase activity	2.76E-02
73	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.94E-02
74	GO:0050660: flavin adenine dinucleotide binding	3.00E-02
75	GO:0050897: cobalt ion binding	3.04E-02
76	GO:0004497: monooxygenase activity	3.22E-02
77	GO:0003993: acid phosphatase activity	3.35E-02
78	GO:0008422: beta-glucosidase activity	3.45E-02
79	GO:0042393: histone binding	3.56E-02
80	GO:0015293: symporter activity	4.22E-02
81	GO:0005198: structural molecule activity	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	1.80E-17
3	GO:0030076: light-harvesting complex	2.05E-15
4	GO:0010287: plastoglobule	4.33E-14
5	GO:0009579: thylakoid	1.42E-12
6	GO:0009534: chloroplast thylakoid	1.52E-12
7	GO:0009535: chloroplast thylakoid membrane	7.38E-11
8	GO:0009941: chloroplast envelope	1.94E-10
9	GO:0009523: photosystem II	1.15E-07
10	GO:0009517: PSII associated light-harvesting complex II	2.40E-05
11	GO:0016021: integral component of membrane	2.92E-05
12	GO:0042651: thylakoid membrane	4.11E-05
13	GO:0009507: chloroplast	5.51E-04
14	GO:0016020: membrane	1.02E-03
15	GO:0009898: cytoplasmic side of plasma membrane	1.24E-03
16	GO:0032586: protein storage vacuole membrane	1.24E-03
17	GO:0030127: COPII vesicle coat	1.94E-03
18	GO:0034707: chloride channel complex	1.94E-03
19	GO:0009533: chloroplast stromal thylakoid	2.74E-03
20	GO:0009538: photosystem I reaction center	3.17E-03
21	GO:0000326: protein storage vacuole	3.63E-03
22	GO:0010494: cytoplasmic stress granule	4.10E-03
23	GO:0031966: mitochondrial membrane	6.32E-03
24	GO:0005938: cell cortex	6.78E-03
25	GO:0030095: chloroplast photosystem II	7.37E-03
26	GO:0009654: photosystem II oxygen evolving complex	9.92E-03
27	GO:0031410: cytoplasmic vesicle	1.13E-02
28	GO:0019898: extrinsic component of membrane	1.66E-02
29	GO:0000932: P-body	2.27E-02
30	GO:0005667: transcription factor complex	2.45E-02
31	GO:0009707: chloroplast outer membrane	2.74E-02
32	GO:0005773: vacuole	2.95E-02
33	GO:0031977: thylakoid lumen	3.67E-02
34	GO:0005802: trans-Golgi network	3.95E-02
35	GO:0005618: cell wall	4.52E-02
36	GO:0005783: endoplasmic reticulum	4.85E-02