GO Enrichment Analysis of Co-expressed Genes with
AT2G42770
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015822: ornithine transport | 0.00E+00 |
| 2 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 5 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:0019253: reductive pentose-phosphate cycle | 1.78E-11 |
| 7 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.19E-06 |
| 8 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.19E-06 |
| 9 | GO:0016117: carotenoid biosynthetic process | 1.77E-06 |
| 10 | GO:0009735: response to cytokinin | 1.94E-06 |
| 11 | GO:0006000: fructose metabolic process | 4.44E-06 |
| 12 | GO:0009773: photosynthetic electron transport in photosystem I | 7.66E-06 |
| 13 | GO:0010207: photosystem II assembly | 1.51E-05 |
| 14 | GO:0006810: transport | 1.77E-05 |
| 15 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.93E-05 |
| 16 | GO:0006546: glycine catabolic process | 1.93E-05 |
| 17 | GO:0009853: photorespiration | 2.55E-05 |
| 18 | GO:0016123: xanthophyll biosynthetic process | 3.14E-05 |
| 19 | GO:0009658: chloroplast organization | 9.86E-05 |
| 20 | GO:0006002: fructose 6-phosphate metabolic process | 1.42E-04 |
| 21 | GO:0032544: plastid translation | 1.42E-04 |
| 22 | GO:0000066: mitochondrial ornithine transport | 1.56E-04 |
| 23 | GO:0015979: photosynthesis | 2.00E-04 |
| 24 | GO:0006415: translational termination | 2.86E-04 |
| 25 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.86E-04 |
| 26 | GO:2000123: positive regulation of stomatal complex development | 3.55E-04 |
| 27 | GO:0043039: tRNA aminoacylation | 3.55E-04 |
| 28 | GO:0006094: gluconeogenesis | 3.74E-04 |
| 29 | GO:0009767: photosynthetic electron transport chain | 3.74E-04 |
| 30 | GO:0005986: sucrose biosynthetic process | 3.74E-04 |
| 31 | GO:0010581: regulation of starch biosynthetic process | 5.82E-04 |
| 32 | GO:0006433: prolyl-tRNA aminoacylation | 5.82E-04 |
| 33 | GO:0071492: cellular response to UV-A | 5.82E-04 |
| 34 | GO:0006696: ergosterol biosynthetic process | 5.82E-04 |
| 35 | GO:0006418: tRNA aminoacylation for protein translation | 6.43E-04 |
| 36 | GO:0061077: chaperone-mediated protein folding | 7.05E-04 |
| 37 | GO:0080092: regulation of pollen tube growth | 7.69E-04 |
| 38 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 8.33E-04 |
| 39 | GO:0010239: chloroplast mRNA processing | 8.33E-04 |
| 40 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.33E-04 |
| 41 | GO:0033014: tetrapyrrole biosynthetic process | 8.33E-04 |
| 42 | GO:0006096: glycolytic process | 9.04E-04 |
| 43 | GO:0010109: regulation of photosynthesis | 1.10E-03 |
| 44 | GO:0019676: ammonia assimilation cycle | 1.10E-03 |
| 45 | GO:0015976: carbon utilization | 1.10E-03 |
| 46 | GO:0071486: cellular response to high light intensity | 1.10E-03 |
| 47 | GO:0009765: photosynthesis, light harvesting | 1.10E-03 |
| 48 | GO:0045727: positive regulation of translation | 1.10E-03 |
| 49 | GO:2000122: negative regulation of stomatal complex development | 1.10E-03 |
| 50 | GO:2000038: regulation of stomatal complex development | 1.10E-03 |
| 51 | GO:0010037: response to carbon dioxide | 1.10E-03 |
| 52 | GO:0006542: glutamine biosynthetic process | 1.10E-03 |
| 53 | GO:0010375: stomatal complex patterning | 1.40E-03 |
| 54 | GO:0016120: carotene biosynthetic process | 1.40E-03 |
| 55 | GO:0010236: plastoquinone biosynthetic process | 1.40E-03 |
| 56 | GO:0031365: N-terminal protein amino acid modification | 1.40E-03 |
| 57 | GO:0042549: photosystem II stabilization | 1.72E-03 |
| 58 | GO:0016554: cytidine to uridine editing | 1.72E-03 |
| 59 | GO:0010190: cytochrome b6f complex assembly | 1.72E-03 |
| 60 | GO:0046686: response to cadmium ion | 1.93E-03 |
| 61 | GO:0042026: protein refolding | 2.06E-03 |
| 62 | GO:0006458: 'de novo' protein folding | 2.06E-03 |
| 63 | GO:0009854: oxidative photosynthetic carbon pathway | 2.06E-03 |
| 64 | GO:0008610: lipid biosynthetic process | 2.80E-03 |
| 65 | GO:0009657: plastid organization | 3.21E-03 |
| 66 | GO:0019430: removal of superoxide radicals | 3.21E-03 |
| 67 | GO:0010206: photosystem II repair | 3.63E-03 |
| 68 | GO:0006783: heme biosynthetic process | 3.63E-03 |
| 69 | GO:0048589: developmental growth | 3.63E-03 |
| 70 | GO:0006839: mitochondrial transport | 3.73E-03 |
| 71 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.06E-03 |
| 72 | GO:1900865: chloroplast RNA modification | 4.06E-03 |
| 73 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.06E-03 |
| 74 | GO:0009416: response to light stimulus | 4.08E-03 |
| 75 | GO:0009744: response to sucrose | 4.21E-03 |
| 76 | GO:0006259: DNA metabolic process | 4.52E-03 |
| 77 | GO:0006535: cysteine biosynthetic process from serine | 4.52E-03 |
| 78 | GO:0019684: photosynthesis, light reaction | 4.99E-03 |
| 79 | GO:0006265: DNA topological change | 4.99E-03 |
| 80 | GO:0043085: positive regulation of catalytic activity | 4.99E-03 |
| 81 | GO:0000272: polysaccharide catabolic process | 4.99E-03 |
| 82 | GO:0009409: response to cold | 5.34E-03 |
| 83 | GO:0006006: glucose metabolic process | 5.98E-03 |
| 84 | GO:0010020: chloroplast fission | 6.50E-03 |
| 85 | GO:0005985: sucrose metabolic process | 7.04E-03 |
| 86 | GO:0090351: seedling development | 7.04E-03 |
| 87 | GO:0019344: cysteine biosynthetic process | 8.16E-03 |
| 88 | GO:0007010: cytoskeleton organization | 8.16E-03 |
| 89 | GO:0006730: one-carbon metabolic process | 9.96E-03 |
| 90 | GO:0042631: cellular response to water deprivation | 1.25E-02 |
| 91 | GO:0006413: translational initiation | 1.30E-02 |
| 92 | GO:0007059: chromosome segregation | 1.39E-02 |
| 93 | GO:0019252: starch biosynthetic process | 1.46E-02 |
| 94 | GO:0009611: response to wounding | 1.80E-02 |
| 95 | GO:0007267: cell-cell signaling | 1.84E-02 |
| 96 | GO:0010027: thylakoid membrane organization | 1.99E-02 |
| 97 | GO:0042128: nitrate assimilation | 2.16E-02 |
| 98 | GO:0005975: carbohydrate metabolic process | 2.22E-02 |
| 99 | GO:0009817: defense response to fungus, incompatible interaction | 2.41E-02 |
| 100 | GO:0048481: plant ovule development | 2.41E-02 |
| 101 | GO:0018298: protein-chromophore linkage | 2.41E-02 |
| 102 | GO:0048767: root hair elongation | 2.50E-02 |
| 103 | GO:0007568: aging | 2.67E-02 |
| 104 | GO:0010119: regulation of stomatal movement | 2.67E-02 |
| 105 | GO:0016051: carbohydrate biosynthetic process | 2.85E-02 |
| 106 | GO:0045454: cell redox homeostasis | 3.22E-02 |
| 107 | GO:0009644: response to high light intensity | 3.61E-02 |
| 108 | GO:0042742: defense response to bacterium | 4.22E-02 |
| 109 | GO:0006364: rRNA processing | 4.22E-02 |
| 110 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.33E-02 |
| 111 | GO:0008152: metabolic process | 4.36E-02 |
| 112 | GO:0048316: seed development | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 2 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 3 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 6 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 7 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 8 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 9 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 10 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 11 | GO:0004618: phosphoglycerate kinase activity | 1.19E-06 |
| 12 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.19E-06 |
| 13 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.03E-05 |
| 14 | GO:0016149: translation release factor activity, codon specific | 1.03E-05 |
| 15 | GO:0005528: FK506 binding | 2.63E-05 |
| 16 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 6.56E-05 |
| 17 | GO:0004831: tyrosine-tRNA ligase activity | 1.56E-04 |
| 18 | GO:0004325: ferrochelatase activity | 1.56E-04 |
| 19 | GO:0051996: squalene synthase activity | 1.56E-04 |
| 20 | GO:0003747: translation release factor activity | 1.73E-04 |
| 21 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.86E-04 |
| 22 | GO:0010297: heteropolysaccharide binding | 3.55E-04 |
| 23 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 3.55E-04 |
| 24 | GO:0004047: aminomethyltransferase activity | 3.55E-04 |
| 25 | GO:0000064: L-ornithine transmembrane transporter activity | 3.55E-04 |
| 26 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.55E-04 |
| 27 | GO:0008967: phosphoglycolate phosphatase activity | 3.55E-04 |
| 28 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.55E-04 |
| 29 | GO:0050017: L-3-cyanoalanine synthase activity | 3.55E-04 |
| 30 | GO:0010291: carotene beta-ring hydroxylase activity | 3.55E-04 |
| 31 | GO:0004827: proline-tRNA ligase activity | 5.82E-04 |
| 32 | GO:0003913: DNA photolyase activity | 5.82E-04 |
| 33 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.82E-04 |
| 34 | GO:0004751: ribose-5-phosphate isomerase activity | 5.82E-04 |
| 35 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.13E-04 |
| 36 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 8.33E-04 |
| 37 | GO:0004812: aminoacyl-tRNA ligase activity | 9.79E-04 |
| 38 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.10E-03 |
| 39 | GO:0008453: alanine-glyoxylate transaminase activity | 1.10E-03 |
| 40 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.40E-03 |
| 41 | GO:0004356: glutamate-ammonia ligase activity | 1.40E-03 |
| 42 | GO:0080030: methyl indole-3-acetate esterase activity | 1.72E-03 |
| 43 | GO:0042578: phosphoric ester hydrolase activity | 1.72E-03 |
| 44 | GO:0004124: cysteine synthase activity | 2.06E-03 |
| 45 | GO:0008235: metalloexopeptidase activity | 2.42E-03 |
| 46 | GO:0009881: photoreceptor activity | 2.42E-03 |
| 47 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 3.21E-03 |
| 48 | GO:0008047: enzyme activator activity | 4.52E-03 |
| 49 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.55E-03 |
| 50 | GO:0005198: structural molecule activity | 4.73E-03 |
| 51 | GO:0044183: protein binding involved in protein folding | 4.99E-03 |
| 52 | GO:0004177: aminopeptidase activity | 4.99E-03 |
| 53 | GO:0031072: heat shock protein binding | 5.98E-03 |
| 54 | GO:0004565: beta-galactosidase activity | 5.98E-03 |
| 55 | GO:0004089: carbonate dehydratase activity | 5.98E-03 |
| 56 | GO:0051082: unfolded protein binding | 8.06E-03 |
| 57 | GO:0019843: rRNA binding | 1.01E-02 |
| 58 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.04E-02 |
| 59 | GO:0022891: substrate-specific transmembrane transporter activity | 1.06E-02 |
| 60 | GO:0003756: protein disulfide isomerase activity | 1.12E-02 |
| 61 | GO:0003824: catalytic activity | 1.37E-02 |
| 62 | GO:0004791: thioredoxin-disulfide reductase activity | 1.39E-02 |
| 63 | GO:0016853: isomerase activity | 1.39E-02 |
| 64 | GO:0050662: coenzyme binding | 1.39E-02 |
| 65 | GO:0019901: protein kinase binding | 1.46E-02 |
| 66 | GO:0048038: quinone binding | 1.54E-02 |
| 67 | GO:0003743: translation initiation factor activity | 1.63E-02 |
| 68 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.68E-02 |
| 69 | GO:0008483: transaminase activity | 1.84E-02 |
| 70 | GO:0005200: structural constituent of cytoskeleton | 1.84E-02 |
| 71 | GO:0016597: amino acid binding | 1.92E-02 |
| 72 | GO:0016168: chlorophyll binding | 2.07E-02 |
| 73 | GO:0016740: transferase activity | 2.25E-02 |
| 74 | GO:0008236: serine-type peptidase activity | 2.32E-02 |
| 75 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.32E-02 |
| 76 | GO:0050897: cobalt ion binding | 2.67E-02 |
| 77 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.94E-02 |
| 78 | GO:0050661: NADP binding | 3.13E-02 |
| 79 | GO:0004185: serine-type carboxypeptidase activity | 3.42E-02 |
| 80 | GO:0016787: hydrolase activity | 3.68E-02 |
| 81 | GO:0051287: NAD binding | 3.91E-02 |
| 82 | GO:0009055: electron carrier activity | 4.24E-02 |
| 83 | GO:0004519: endonuclease activity | 4.30E-02 |
| 84 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 2.65E-47 |
| 5 | GO:0009570: chloroplast stroma | 7.75E-23 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 8.42E-20 |
| 7 | GO:0009941: chloroplast envelope | 2.73E-15 |
| 8 | GO:0009579: thylakoid | 1.45E-10 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.25E-09 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.70E-08 |
| 11 | GO:0010319: stromule | 1.75E-07 |
| 12 | GO:0009534: chloroplast thylakoid | 4.86E-07 |
| 13 | GO:0005960: glycine cleavage complex | 1.03E-05 |
| 14 | GO:0031969: chloroplast membrane | 1.63E-05 |
| 15 | GO:0048046: apoplast | 1.73E-05 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 3.10E-05 |
| 17 | GO:0017101: aminoacyl-tRNA synthetase multienzyme complex | 1.56E-04 |
| 18 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.55E-04 |
| 19 | GO:0030095: chloroplast photosystem II | 4.23E-04 |
| 20 | GO:0031977: thylakoid lumen | 4.55E-04 |
| 21 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 1.10E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 1.30E-03 |
| 23 | GO:0009523: photosystem II | 1.30E-03 |
| 24 | GO:0055035: plastid thylakoid membrane | 1.40E-03 |
| 25 | GO:0010287: plastoglobule | 1.40E-03 |
| 26 | GO:0009295: nucleoid | 1.78E-03 |
| 27 | GO:0009539: photosystem II reaction center | 3.21E-03 |
| 28 | GO:0016324: apical plasma membrane | 4.52E-03 |
| 29 | GO:0009508: plastid chromosome | 5.98E-03 |
| 30 | GO:0042651: thylakoid membrane | 8.74E-03 |
| 31 | GO:0009532: plastid stroma | 9.34E-03 |
| 32 | GO:0005759: mitochondrial matrix | 1.27E-02 |
| 33 | GO:0005874: microtubule | 2.60E-02 |
| 34 | GO:0015934: large ribosomal subunit | 2.67E-02 |
| 35 | GO:0005743: mitochondrial inner membrane | 3.68E-02 |
| 36 | GO:0005856: cytoskeleton | 3.71E-02 |
| 37 | GO:0005840: ribosome | 4.47E-02 |
| 38 | GO:0005747: mitochondrial respiratory chain complex I | 4.86E-02 |