co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045185: maintenance of protein location	0.00E+00
2	GO:0071816: tail-anchored membrane protein insertion into ER membrane	0.00E+00
3	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
4	GO:0046109: uridine biosynthetic process	0.00E+00
5	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
6	GO:0006212: uracil catabolic process	1.02E-06
7	GO:0019483: beta-alanine biosynthetic process	1.02E-06
8	GO:0006014: D-ribose metabolic process	4.09E-05
9	GO:0006102: isocitrate metabolic process	9.94E-05
10	GO:0043562: cellular response to nitrogen levels	1.25E-04
11	GO:0080120: CAAX-box protein maturation	1.44E-04
12	GO:0035266: meristem growth	1.44E-04
13	GO:0071586: CAAX-box protein processing	1.44E-04
14	GO:0007292: female gamete generation	1.44E-04
15	GO:0000303: response to superoxide	1.44E-04
16	GO:0006422: aspartyl-tRNA aminoacylation	1.44E-04
17	GO:0030198: extracellular matrix organization	1.44E-04
18	GO:0006468: protein phosphorylation	1.98E-04
19	GO:0048829: root cap development	2.18E-04
20	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	3.29E-04
21	GO:0015914: phospholipid transport	3.29E-04
22	GO:0010155: regulation of proton transport	3.29E-04
23	GO:0007584: response to nutrient	3.29E-04
24	GO:0051788: response to misfolded protein	3.29E-04
25	GO:0031349: positive regulation of defense response	3.29E-04
26	GO:0051258: protein polymerization	3.29E-04
27	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.29E-04
28	GO:0006099: tricarboxylic acid cycle	3.32E-04
29	GO:0010102: lateral root morphogenesis	3.34E-04
30	GO:0060968: regulation of gene silencing	5.40E-04
31	GO:0032786: positive regulation of DNA-templated transcription, elongation	5.40E-04
32	GO:0002230: positive regulation of defense response to virus by host	5.40E-04
33	GO:0010359: regulation of anion channel activity	5.40E-04
34	GO:1902290: positive regulation of defense response to oomycetes	7.73E-04
35	GO:0006809: nitric oxide biosynthetic process	7.73E-04
36	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.73E-04
37	GO:0006542: glutamine biosynthetic process	1.02E-03
38	GO:0033320: UDP-D-xylose biosynthetic process	1.02E-03
39	GO:0042273: ribosomal large subunit biogenesis	1.02E-03
40	GO:0010107: potassium ion import	1.02E-03
41	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.02E-03
42	GO:0019252: starch biosynthetic process	1.16E-03
43	GO:0010193: response to ozone	1.24E-03
44	GO:0000302: response to reactive oxygen species	1.24E-03
45	GO:0005513: detection of calcium ion	1.29E-03
46	GO:0007029: endoplasmic reticulum organization	1.29E-03
47	GO:0018344: protein geranylgeranylation	1.29E-03
48	GO:0000304: response to singlet oxygen	1.29E-03
49	GO:0098719: sodium ion import across plasma membrane	1.29E-03
50	GO:0018279: protein N-linked glycosylation via asparagine	1.29E-03
51	GO:0010583: response to cyclopentenone	1.32E-03
52	GO:0046686: response to cadmium ion	1.53E-03
53	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.59E-03
54	GO:0048827: phyllome development	1.59E-03
55	GO:0048232: male gamete generation	1.59E-03
56	GO:0043248: proteasome assembly	1.59E-03
57	GO:0042732: D-xylose metabolic process	1.59E-03
58	GO:1902456: regulation of stomatal opening	1.59E-03
59	GO:0009612: response to mechanical stimulus	1.91E-03
60	GO:0006694: steroid biosynthetic process	1.91E-03
61	GO:0048280: vesicle fusion with Golgi apparatus	1.91E-03
62	GO:1900057: positive regulation of leaf senescence	2.24E-03
63	GO:0009734: auxin-activated signaling pathway	2.40E-03
64	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.60E-03
65	GO:0006491: N-glycan processing	2.60E-03
66	GO:0010078: maintenance of root meristem identity	2.60E-03
67	GO:0009737: response to abscisic acid	2.84E-03
68	GO:0007389: pattern specification process	2.96E-03
69	GO:0009699: phenylpropanoid biosynthetic process	2.96E-03
70	GO:0016310: phosphorylation	3.75E-03
71	GO:0051453: regulation of intracellular pH	3.76E-03
72	GO:1900426: positive regulation of defense response to bacterium	3.76E-03
73	GO:0006896: Golgi to vacuole transport	4.18E-03
74	GO:0006325: chromatin organization	4.18E-03
75	GO:0007064: mitotic sister chromatid cohesion	4.18E-03
76	GO:0030148: sphingolipid biosynthetic process	4.61E-03
77	GO:0010015: root morphogenesis	4.61E-03
78	GO:0046777: protein autophosphorylation	4.84E-03
79	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.06E-03
80	GO:0012501: programmed cell death	5.06E-03
81	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	5.52E-03
82	GO:0006807: nitrogen compound metabolic process	5.52E-03
83	GO:0006886: intracellular protein transport	5.82E-03
84	GO:0009933: meristem structural organization	6.00E-03
85	GO:0090351: seedling development	6.50E-03
86	GO:0009225: nucleotide-sugar metabolic process	6.50E-03
87	GO:0000162: tryptophan biosynthetic process	7.00E-03
88	GO:0034976: response to endoplasmic reticulum stress	7.00E-03
89	GO:0018105: peptidyl-serine phosphorylation	7.39E-03
90	GO:2000377: regulation of reactive oxygen species metabolic process	7.52E-03
91	GO:0030433: ubiquitin-dependent ERAD pathway	9.17E-03
92	GO:0009414: response to water deprivation	9.60E-03
93	GO:0006012: galactose metabolic process	9.75E-03
94	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.09E-02
95	GO:0042147: retrograde transport, endosome to Golgi	1.09E-02
96	GO:0000413: protein peptidyl-prolyl isomerization	1.16E-02
97	GO:0010118: stomatal movement	1.16E-02
98	GO:0042631: cellular response to water deprivation	1.16E-02
99	GO:0009733: response to auxin	1.19E-02
100	GO:0071472: cellular response to salt stress	1.22E-02
101	GO:0006814: sodium ion transport	1.28E-02
102	GO:0048544: recognition of pollen	1.28E-02
103	GO:0006623: protein targeting to vacuole	1.35E-02
104	GO:0006891: intra-Golgi vesicle-mediated transport	1.41E-02
105	GO:0015031: protein transport	1.43E-02
106	GO:0009738: abscisic acid-activated signaling pathway	1.45E-02
107	GO:0009630: gravitropism	1.48E-02
108	GO:0007264: small GTPase mediated signal transduction	1.48E-02
109	GO:0016032: viral process	1.48E-02
110	GO:0006914: autophagy	1.62E-02
111	GO:0035556: intracellular signal transduction	1.62E-02
112	GO:0071805: potassium ion transmembrane transport	1.69E-02
113	GO:0006508: proteolysis	1.80E-02
114	GO:0016126: sterol biosynthetic process	1.84E-02
115	GO:0009607: response to biotic stimulus	1.91E-02
116	GO:0009816: defense response to bacterium, incompatible interaction	1.91E-02
117	GO:0042128: nitrate assimilation	1.99E-02
118	GO:0006888: ER to Golgi vesicle-mediated transport	2.06E-02
119	GO:0006970: response to osmotic stress	2.08E-02
120	GO:0006457: protein folding	2.10E-02
121	GO:0008219: cell death	2.22E-02
122	GO:0030244: cellulose biosynthetic process	2.22E-02
123	GO:0048767: root hair elongation	2.30E-02
124	GO:0009813: flavonoid biosynthetic process	2.30E-02
125	GO:0010311: lateral root formation	2.30E-02
126	GO:0006499: N-terminal protein myristoylation	2.38E-02
127	GO:0080167: response to karrikin	2.39E-02
128	GO:0007568: aging	2.46E-02
129	GO:0010119: regulation of stomatal movement	2.46E-02
130	GO:0016192: vesicle-mediated transport	2.52E-02
131	GO:0055114: oxidation-reduction process	2.53E-02
132	GO:0009867: jasmonic acid mediated signaling pathway	2.63E-02
133	GO:0045087: innate immune response	2.63E-02
134	GO:0016051: carbohydrate biosynthetic process	2.63E-02
135	GO:0000209: protein polyubiquitination	3.23E-02
136	GO:0009965: leaf morphogenesis	3.42E-02
137	GO:0016042: lipid catabolic process	3.43E-02
138	GO:0009408: response to heat	3.53E-02
139	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.60E-02
140	GO:0048364: root development	3.68E-02
141	GO:0009664: plant-type cell wall organization	3.70E-02
142	GO:0006364: rRNA processing	3.89E-02
143	GO:0006486: protein glycosylation	3.89E-02
144	GO:0006096: glycolytic process	4.38E-02
145	GO:0048367: shoot system development	4.48E-02
146	GO:0009626: plant-type hypersensitive response	4.58E-02
147	GO:0006952: defense response	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0004157: dihydropyrimidinase activity	0.00E+00
2	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
3	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0003837: beta-ureidopropionase activity	0.00E+00
6	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
7	GO:0004631: phosphomevalonate kinase activity	0.00E+00
8	GO:0005524: ATP binding	6.51E-06
9	GO:0016301: kinase activity	6.64E-06
10	GO:0004029: aldehyde dehydrogenase (NAD) activity	4.09E-05
11	GO:0004747: ribokinase activity	5.74E-05
12	GO:0008320: protein transmembrane transporter activity	7.70E-05
13	GO:0008865: fructokinase activity	9.94E-05
14	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.44E-04
15	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.44E-04
16	GO:0004815: aspartate-tRNA ligase activity	1.44E-04
17	GO:0008802: betaine-aldehyde dehydrogenase activity	1.44E-04
18	GO:0004674: protein serine/threonine kinase activity	1.59E-04
19	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.84E-04
20	GO:0045140: inositol phosphoceramide synthase activity	3.29E-04
21	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.29E-04
22	GO:0004751: ribose-5-phosphate isomerase activity	5.40E-04
23	GO:0005093: Rab GDP-dissociation inhibitor activity	5.40E-04
24	GO:0004324: ferredoxin-NADP+ reductase activity	5.40E-04
25	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	5.40E-04
26	GO:0035198: miRNA binding	7.73E-04
27	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	7.73E-04
28	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.73E-04
29	GO:0000993: RNA polymerase II core binding	1.02E-03
30	GO:0016853: isomerase activity	1.09E-03
31	GO:0004356: glutamate-ammonia ligase activity	1.29E-03
32	GO:0045431: flavonol synthase activity	1.29E-03
33	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.29E-03
34	GO:0017137: Rab GTPase binding	1.29E-03
35	GO:0036402: proteasome-activating ATPase activity	1.59E-03
36	GO:0048040: UDP-glucuronate decarboxylase activity	1.59E-03
37	GO:0004559: alpha-mannosidase activity	1.91E-03
38	GO:0070403: NAD+ binding	1.91E-03
39	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.91E-03
40	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.98E-03
41	GO:0004683: calmodulin-dependent protein kinase activity	2.09E-03
42	GO:0004034: aldose 1-epimerase activity	2.60E-03
43	GO:0005267: potassium channel activity	2.96E-03
44	GO:0030955: potassium ion binding	3.76E-03
45	GO:0004743: pyruvate kinase activity	3.76E-03
46	GO:0045309: protein phosphorylated amino acid binding	3.76E-03
47	GO:0004713: protein tyrosine kinase activity	4.18E-03
48	GO:0015386: potassium:proton antiporter activity	4.61E-03
49	GO:0005543: phospholipid binding	4.61E-03
50	GO:0019904: protein domain specific binding	4.61E-03
51	GO:0031624: ubiquitin conjugating enzyme binding	6.00E-03
52	GO:0004175: endopeptidase activity	6.00E-03
53	GO:0017025: TBP-class protein binding	6.50E-03
54	GO:0003954: NADH dehydrogenase activity	7.52E-03
55	GO:0043130: ubiquitin binding	7.52E-03
56	GO:0005509: calcium ion binding	8.81E-03
57	GO:0003727: single-stranded RNA binding	1.03E-02
58	GO:0003756: protein disulfide isomerase activity	1.03E-02
59	GO:0004872: receptor activity	1.35E-02
60	GO:0016491: oxidoreductase activity	1.51E-02
61	GO:0015385: sodium:proton antiporter activity	1.55E-02
62	GO:0004672: protein kinase activity	1.78E-02
63	GO:0000287: magnesium ion binding	1.89E-02
64	GO:0005515: protein binding	1.99E-02
65	GO:0004806: triglyceride lipase activity	2.06E-02
66	GO:0004004: ATP-dependent RNA helicase activity	2.06E-02
67	GO:0008236: serine-type peptidase activity	2.14E-02
68	GO:0005096: GTPase activator activity	2.30E-02
69	GO:0008233: peptidase activity	2.35E-02
70	GO:0005507: copper ion binding	2.36E-02
71	GO:0004222: metalloendopeptidase activity	2.38E-02
72	GO:0005516: calmodulin binding	2.53E-02
73	GO:0003746: translation elongation factor activity	2.63E-02
74	GO:0000149: SNARE binding	2.80E-02
75	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.80E-02
76	GO:0005484: SNAP receptor activity	3.15E-02
77	GO:0043621: protein self-association	3.33E-02
78	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.51E-02
79	GO:0003924: GTPase activity	3.53E-02
80	GO:0051287: NAD binding	3.60E-02
81	GO:0045735: nutrient reservoir activity	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	7.39E-08
2	GO:0005789: endoplasmic reticulum membrane	1.63E-06
3	GO:0005783: endoplasmic reticulum	6.80E-06
4	GO:0032580: Golgi cisterna membrane	1.21E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	1.44E-04
6	GO:0032044: DSIF complex	1.44E-04
7	GO:0031304: intrinsic component of mitochondrial inner membrane	3.29E-04
8	GO:0030134: ER to Golgi transport vesicle	3.29E-04
9	GO:0005901: caveola	3.29E-04
10	GO:0031902: late endosome membrane	3.92E-04
11	GO:0005794: Golgi apparatus	3.93E-04
12	GO:0005829: cytosol	4.18E-04
13	GO:0005782: peroxisomal matrix	5.40E-04
14	GO:0016021: integral component of membrane	6.19E-04
15	GO:0005968: Rab-protein geranylgeranyltransferase complex	7.73E-04
16	GO:0005777: peroxisome	9.49E-04
17	GO:0005737: cytoplasm	1.25E-03
18	GO:0008250: oligosaccharyltransferase complex	1.29E-03
19	GO:0016020: membrane	1.40E-03
20	GO:0030140: trans-Golgi network transport vesicle	1.59E-03
21	GO:0005802: trans-Golgi network	1.70E-03
22	GO:0031597: cytosolic proteasome complex	1.91E-03
23	GO:0016363: nuclear matrix	1.91E-03
24	GO:0031595: nuclear proteasome complex	2.24E-03
25	GO:0030687: preribosome, large subunit precursor	2.24E-03
26	GO:0012507: ER to Golgi transport vesicle membrane	2.60E-03
27	GO:0034399: nuclear periphery	2.60E-03
28	GO:0008540: proteasome regulatory particle, base subcomplex	3.76E-03
29	GO:0090404: pollen tube tip	4.61E-03
30	GO:0000502: proteasome complex	5.05E-03
31	GO:0030176: integral component of endoplasmic reticulum membrane	6.50E-03
32	GO:0005774: vacuolar membrane	7.35E-03
33	GO:0005768: endosome	8.49E-03
34	GO:0005770: late endosome	1.22E-02
35	GO:0000139: Golgi membrane	1.57E-02
36	GO:0005788: endoplasmic reticulum lumen	1.91E-02
37	GO:0000151: ubiquitin ligase complex	2.22E-02
38	GO:0000325: plant-type vacuole	2.46E-02
39	GO:0031201: SNARE complex	2.97E-02
40	GO:0005773: vacuole	4.47E-02
41	GO:0010008: endosome membrane	4.48E-02
42	GO:0012505: endomembrane system	4.89E-02