Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G41730

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033587: shikimate biosynthetic process0.00E+00
2GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
3GO:0006182: cGMP biosynthetic process0.00E+00
4GO:0006592: ornithine biosynthetic process0.00E+00
5GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
6GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
7GO:0042742: defense response to bacterium2.36E-05
8GO:0006468: protein phosphorylation4.55E-05
9GO:0010150: leaf senescence1.02E-04
10GO:0009617: response to bacterium1.48E-04
11GO:1903648: positive regulation of chlorophyll catabolic process2.16E-04
12GO:0051245: negative regulation of cellular defense response2.16E-04
13GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.16E-04
14GO:0006481: C-terminal protein methylation2.16E-04
15GO:0010941: regulation of cell death2.16E-04
16GO:0010726: positive regulation of hydrogen peroxide metabolic process2.16E-04
17GO:0010036: response to boron-containing substance2.16E-04
18GO:0010120: camalexin biosynthetic process2.29E-04
19GO:0043069: negative regulation of programmed cell death3.88E-04
20GO:0009682: induced systemic resistance4.49E-04
21GO:0052542: defense response by callose deposition4.81E-04
22GO:0060919: auxin influx4.81E-04
23GO:0015865: purine nucleotide transport4.81E-04
24GO:0019441: tryptophan catabolic process to kynurenine4.81E-04
25GO:0080029: cellular response to boron-containing substance levels4.81E-04
26GO:0006672: ceramide metabolic process4.81E-04
27GO:0070588: calcium ion transmembrane transport7.34E-04
28GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening7.83E-04
29GO:0010359: regulation of anion channel activity7.83E-04
30GO:0051176: positive regulation of sulfur metabolic process7.83E-04
31GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway7.83E-04
32GO:0048281: inflorescence morphogenesis7.83E-04
33GO:0007166: cell surface receptor signaling pathway8.67E-04
34GO:0051707: response to other organism8.91E-04
35GO:0015700: arsenite transport1.12E-03
36GO:0006612: protein targeting to membrane1.12E-03
37GO:0001676: long-chain fatty acid metabolic process1.12E-03
38GO:0010116: positive regulation of abscisic acid biosynthetic process1.12E-03
39GO:0046713: borate transport1.12E-03
40GO:0046902: regulation of mitochondrial membrane permeability1.12E-03
41GO:0009399: nitrogen fixation1.12E-03
42GO:0071456: cellular response to hypoxia1.18E-03
43GO:0080142: regulation of salicylic acid biosynthetic process1.48E-03
44GO:0006542: glutamine biosynthetic process1.48E-03
45GO:0010483: pollen tube reception1.48E-03
46GO:0006536: glutamate metabolic process1.48E-03
47GO:0010363: regulation of plant-type hypersensitive response1.48E-03
48GO:0009626: plant-type hypersensitive response1.72E-03
49GO:0000304: response to singlet oxygen1.89E-03
50GO:0009697: salicylic acid biosynthetic process1.89E-03
51GO:0007029: endoplasmic reticulum organization1.89E-03
52GO:0030308: negative regulation of cell growth1.89E-03
53GO:0010200: response to chitin1.99E-03
54GO:0046777: protein autophosphorylation2.09E-03
55GO:0002229: defense response to oomycetes2.17E-03
56GO:0009630: gravitropism2.31E-03
57GO:1902456: regulation of stomatal opening2.33E-03
58GO:1900425: negative regulation of defense response to bacterium2.33E-03
59GO:0010337: regulation of salicylic acid metabolic process2.33E-03
60GO:0006014: D-ribose metabolic process2.33E-03
61GO:0006561: proline biosynthetic process2.33E-03
62GO:0010942: positive regulation of cell death2.33E-03
63GO:0010256: endomembrane system organization2.33E-03
64GO:0010315: auxin efflux2.33E-03
65GO:0098655: cation transmembrane transport2.80E-03
66GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.80E-03
67GO:0070370: cellular heat acclimation3.30E-03
68GO:1900057: positive regulation of leaf senescence3.30E-03
69GO:1902074: response to salt3.30E-03
70GO:0006955: immune response3.30E-03
71GO:1900056: negative regulation of leaf senescence3.30E-03
72GO:0055114: oxidation-reduction process3.57E-03
73GO:0030091: protein repair3.82E-03
74GO:0009061: anaerobic respiration3.82E-03
75GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.82E-03
76GO:0009819: drought recovery3.82E-03
77GO:0006526: arginine biosynthetic process4.38E-03
78GO:0010204: defense response signaling pathway, resistance gene-independent4.38E-03
79GO:0009808: lignin metabolic process4.38E-03
80GO:0009407: toxin catabolic process4.48E-03
81GO:0009821: alkaloid biosynthetic process4.95E-03
82GO:0090305: nucleic acid phosphodiester bond hydrolysis4.95E-03
83GO:0090333: regulation of stomatal closure4.95E-03
84GO:0010112: regulation of systemic acquired resistance4.95E-03
85GO:0007338: single fertilization4.95E-03
86GO:0046685: response to arsenic-containing substance4.95E-03
87GO:0006098: pentose-phosphate shunt4.95E-03
88GO:0008202: steroid metabolic process5.56E-03
89GO:0071577: zinc II ion transmembrane transport5.56E-03
90GO:0050832: defense response to fungus5.95E-03
91GO:0009870: defense response signaling pathway, resistance gene-dependent6.18E-03
92GO:0006535: cysteine biosynthetic process from serine6.18E-03
93GO:0006032: chitin catabolic process6.18E-03
94GO:0052544: defense response by callose deposition in cell wall6.84E-03
95GO:0000272: polysaccharide catabolic process6.84E-03
96GO:0006979: response to oxidative stress7.12E-03
97GO:0009636: response to toxic substance7.45E-03
98GO:0012501: programmed cell death7.51E-03
99GO:0009738: abscisic acid-activated signaling pathway7.78E-03
100GO:0055046: microgametogenesis8.22E-03
101GO:0009718: anthocyanin-containing compound biosynthetic process8.22E-03
102GO:0006812: cation transport8.33E-03
103GO:0035556: intracellular signal transduction8.88E-03
104GO:0006813: potassium ion transport8.94E-03
105GO:0010540: basipetal auxin transport8.94E-03
106GO:0034605: cellular response to heat8.94E-03
107GO:0002237: response to molecule of bacterial origin8.94E-03
108GO:0010053: root epidermal cell differentiation9.69E-03
109GO:0010167: response to nitrate9.69E-03
110GO:0000162: tryptophan biosynthetic process1.05E-02
111GO:0048367: shoot system development1.09E-02
112GO:0080147: root hair cell development1.12E-02
113GO:2000377: regulation of reactive oxygen species metabolic process1.12E-02
114GO:0005992: trehalose biosynthetic process1.12E-02
115GO:0019344: cysteine biosynthetic process1.12E-02
116GO:0009863: salicylic acid mediated signaling pathway1.12E-02
117GO:0009620: response to fungus1.16E-02
118GO:0031408: oxylipin biosynthetic process1.29E-02
119GO:0016998: cell wall macromolecule catabolic process1.29E-02
120GO:0048278: vesicle docking1.29E-02
121GO:0035428: hexose transmembrane transport1.37E-02
122GO:0016226: iron-sulfur cluster assembly1.37E-02
123GO:0010227: floral organ abscission1.46E-02
124GO:0009561: megagametogenesis1.55E-02
125GO:0009845: seed germination1.73E-02
126GO:0042391: regulation of membrane potential1.74E-02
127GO:0006885: regulation of pH1.83E-02
128GO:0046323: glucose import1.83E-02
129GO:0048544: recognition of pollen1.93E-02
130GO:0061025: membrane fusion1.93E-02
131GO:0009749: response to glucose2.02E-02
132GO:0019252: starch biosynthetic process2.02E-02
133GO:0008654: phospholipid biosynthetic process2.02E-02
134GO:0009851: auxin biosynthetic process2.02E-02
135GO:0000302: response to reactive oxygen species2.12E-02
136GO:0010252: auxin homeostasis2.44E-02
137GO:0006464: cellular protein modification process2.44E-02
138GO:0009567: double fertilization forming a zygote and endosperm2.44E-02
139GO:0071805: potassium ion transmembrane transport2.54E-02
140GO:0010468: regulation of gene expression2.64E-02
141GO:0001666: response to hypoxia2.76E-02
142GO:0010029: regulation of seed germination2.87E-02
143GO:0009816: defense response to bacterium, incompatible interaction2.87E-02
144GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.87E-02
145GO:0006906: vesicle fusion2.99E-02
146GO:0009627: systemic acquired resistance2.99E-02
147GO:0042128: nitrate assimilation2.99E-02
148GO:0006950: response to stress3.10E-02
149GO:0008219: cell death3.34E-02
150GO:0009817: defense response to fungus, incompatible interaction3.34E-02
151GO:0048767: root hair elongation3.46E-02
152GO:0009813: flavonoid biosynthetic process3.46E-02
153GO:0006970: response to osmotic stress3.68E-02
154GO:0010119: regulation of stomatal movement3.70E-02
155GO:0010043: response to zinc ion3.70E-02
156GO:0009867: jasmonic acid mediated signaling pathway3.95E-02
157GO:0045087: innate immune response3.95E-02
158GO:0006839: mitochondrial transport4.33E-02
159GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.38E-02
160GO:0006887: exocytosis4.46E-02
161GO:0006631: fatty acid metabolic process4.46E-02
162GO:0046686: response to cadmium ion4.50E-02
163GO:0044550: secondary metabolite biosynthetic process4.59E-02
164GO:0009926: auxin polar transport4.73E-02
RankGO TermAdjusted P value
1GO:0008777: acetylornithine deacetylase activity0.00E+00
2GO:0004168: dolichol kinase activity0.00E+00
3GO:0080138: borate uptake transmembrane transporter activity0.00E+00
4GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
5GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives0.00E+00
6GO:0016301: kinase activity8.43E-07
7GO:0004674: protein serine/threonine kinase activity2.25E-05
8GO:0005496: steroid binding5.37E-05
9GO:0005524: ATP binding7.42E-05
10GO:0008113: peptide-methionine (S)-S-oxide reductase activity1.10E-04
11GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity2.16E-04
12GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.16E-04
13GO:0033984: indole-3-glycerol-phosphate lyase activity2.16E-04
14GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.16E-04
15GO:0005516: calmodulin binding2.77E-04
16GO:0004713: protein tyrosine kinase activity3.88E-04
17GO:0004061: arylformamidase activity4.81E-04
18GO:0015105: arsenite transmembrane transporter activity4.81E-04
19GO:0004750: ribulose-phosphate 3-epimerase activity4.81E-04
20GO:0032934: sterol binding4.81E-04
21GO:0005388: calcium-transporting ATPase activity5.83E-04
22GO:0004383: guanylate cyclase activity7.83E-04
23GO:0000975: regulatory region DNA binding7.83E-04
24GO:0004364: glutathione transferase activity8.47E-04
25GO:0008408: 3'-5' exonuclease activity1.09E-03
26GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.12E-03
27GO:0046715: borate transmembrane transporter activity1.12E-03
28GO:0004351: glutamate decarboxylase activity1.12E-03
29GO:0008276: protein methyltransferase activity1.12E-03
30GO:0010279: indole-3-acetic acid amido synthetase activity1.48E-03
31GO:0004834: tryptophan synthase activity1.48E-03
32GO:0010328: auxin influx transmembrane transporter activity1.48E-03
33GO:0020037: heme binding1.50E-03
34GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen1.89E-03
35GO:0005471: ATP:ADP antiporter activity1.89E-03
36GO:0004356: glutamate-ammonia ligase activity1.89E-03
37GO:0045431: flavonol synthase activity1.89E-03
38GO:0004605: phosphatidate cytidylyltransferase activity2.33E-03
39GO:0004747: ribokinase activity2.80E-03
40GO:0004656: procollagen-proline 4-dioxygenase activity2.80E-03
41GO:0004124: cysteine synthase activity2.80E-03
42GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.80E-03
43GO:0051213: dioxygenase activity3.12E-03
44GO:0102425: myricetin 3-O-glucosyltransferase activity3.30E-03
45GO:0102360: daphnetin 3-O-glucosyltransferase activity3.30E-03
46GO:0030247: polysaccharide binding3.67E-03
47GO:0047893: flavonol 3-O-glucosyltransferase activity3.82E-03
48GO:0004033: aldo-keto reductase (NADP) activity3.82E-03
49GO:0008865: fructokinase activity3.82E-03
50GO:0008142: oxysterol binding4.38E-03
51GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity4.95E-03
52GO:0071949: FAD binding4.95E-03
53GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.14E-03
54GO:0004712: protein serine/threonine/tyrosine kinase activity5.62E-03
55GO:0004568: chitinase activity6.18E-03
56GO:0008171: O-methyltransferase activity6.18E-03
57GO:0008047: enzyme activator activity6.18E-03
58GO:0008559: xenobiotic-transporting ATPase activity6.84E-03
59GO:0010329: auxin efflux transmembrane transporter activity8.22E-03
60GO:0000175: 3'-5'-exoribonuclease activity8.22E-03
61GO:0004535: poly(A)-specific ribonuclease activity8.94E-03
62GO:0008061: chitin binding9.69E-03
63GO:0030552: cAMP binding9.69E-03
64GO:0004867: serine-type endopeptidase inhibitor activity9.69E-03
65GO:0030553: cGMP binding9.69E-03
66GO:0031418: L-ascorbic acid binding1.12E-02
67GO:0005385: zinc ion transmembrane transporter activity1.12E-02
68GO:0005216: ion channel activity1.21E-02
69GO:0015079: potassium ion transmembrane transporter activity1.21E-02
70GO:0008324: cation transmembrane transporter activity1.21E-02
71GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.28E-02
72GO:0030246: carbohydrate binding1.28E-02
73GO:0035251: UDP-glucosyltransferase activity1.29E-02
74GO:0004540: ribonuclease activity1.29E-02
75GO:0015035: protein disulfide oxidoreductase activity1.31E-02
76GO:0046872: metal ion binding1.32E-02
77GO:0004499: N,N-dimethylaniline monooxygenase activity1.55E-02
78GO:0009055: electron carrier activity1.65E-02
79GO:0005451: monovalent cation:proton antiporter activity1.74E-02
80GO:0005249: voltage-gated potassium channel activity1.74E-02
81GO:0030551: cyclic nucleotide binding1.74E-02
82GO:0030170: pyridoxal phosphate binding1.78E-02
83GO:0046873: metal ion transmembrane transporter activity1.83E-02
84GO:0015144: carbohydrate transmembrane transporter activity1.92E-02
85GO:0005355: glucose transmembrane transporter activity1.93E-02
86GO:0015299: solute:proton antiporter activity1.93E-02
87GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.06E-02
88GO:0005351: sugar:proton symporter activity2.16E-02
89GO:0005506: iron ion binding2.31E-02
90GO:0015385: sodium:proton antiporter activity2.33E-02
91GO:0008237: metallopeptidase activity2.54E-02
92GO:0016597: amino acid binding2.65E-02
93GO:0015250: water channel activity2.76E-02
94GO:0009931: calcium-dependent protein serine/threonine kinase activity2.99E-02
95GO:0004683: calmodulin-dependent protein kinase activity3.10E-02
96GO:0016491: oxidoreductase activity3.53E-02
97GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.70E-02
98GO:0050660: flavin adenine dinucleotide binding3.95E-02
99GO:0004672: protein kinase activity4.13E-02
100GO:0008233: peptidase activity4.16E-02
101GO:0000149: SNARE binding4.20E-02
102GO:0004497: monooxygenase activity4.23E-02
103GO:0050661: NADP binding4.33E-02
104GO:0043565: sequence-specific DNA binding4.58E-02
105GO:0005484: SNAP receptor activity4.73E-02
106GO:0019825: oxygen binding4.80E-02
107GO:0051537: 2 iron, 2 sulfur cluster binding5.00E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane7.77E-07
2GO:0016021: integral component of membrane7.99E-07
3GO:0005783: endoplasmic reticulum6.31E-06
4GO:0030014: CCR4-NOT complex2.16E-04
5GO:0016328: lateral plasma membrane7.83E-04
6GO:0005887: integral component of plasma membrane5.45E-03
7GO:0005829: cytosol9.26E-03
8GO:0030176: integral component of endoplasmic reticulum membrane9.69E-03
9GO:0005789: endoplasmic reticulum membrane1.46E-02
10GO:0043231: intracellular membrane-bounded organelle1.71E-02
11GO:0005770: late endosome1.83E-02
12GO:0005778: peroxisomal membrane2.54E-02
13GO:0031201: SNARE complex4.46E-02
Gene type



Gene DE type