co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41705

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0010219: regulation of vernalization response	0.00E+00
3	GO:1904962: plastid to vacuole vesicle-mediated transport	0.00E+00
4	GO:0046459: short-chain fatty acid metabolic process	0.00E+00
5	GO:0019484: beta-alanine catabolic process	0.00E+00
6	GO:0006480: N-terminal protein amino acid methylation	0.00E+00
7	GO:0071211: protein targeting to vacuole involved in autophagy	0.00E+00
8	GO:0030644: cellular chloride ion homeostasis	0.00E+00
9	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
10	GO:0051928: positive regulation of calcium ion transport	0.00E+00
11	GO:0035556: intracellular signal transduction	2.60E-04
12	GO:1902265: abscisic acid homeostasis	2.70E-04
13	GO:0009865: pollen tube adhesion	2.70E-04
14	GO:0006540: glutamate decarboxylation to succinate	2.70E-04
15	GO:0006369: termination of RNA polymerase II transcription	2.70E-04
16	GO:0009450: gamma-aminobutyric acid catabolic process	2.70E-04
17	GO:1990641: response to iron ion starvation	2.70E-04
18	GO:0006635: fatty acid beta-oxidation	3.18E-04
19	GO:0010286: heat acclimation	4.43E-04
20	GO:1900459: positive regulation of brassinosteroid mediated signaling pathway	5.94E-04
21	GO:1902884: positive regulation of response to oxidative stress	5.94E-04
22	GO:0006101: citrate metabolic process	5.94E-04
23	GO:1902000: homogentisate catabolic process	5.94E-04
24	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	5.94E-04
25	GO:0010033: response to organic substance	5.94E-04
26	GO:0006883: cellular sodium ion homeostasis	5.94E-04
27	GO:0048833: specification of floral organ number	5.94E-04
28	GO:0009817: defense response to fungus, incompatible interaction	7.22E-04
29	GO:0042344: indole glucosinolate catabolic process	9.62E-04
30	GO:0006954: inflammatory response	9.62E-04
31	GO:1901562: response to paraquat	9.62E-04
32	GO:0030029: actin filament-based process	9.62E-04
33	GO:0009072: aromatic amino acid family metabolic process	9.62E-04
34	GO:0006468: protein phosphorylation	1.33E-03
35	GO:0015749: monosaccharide transport	1.38E-03
36	GO:0009113: purine nucleobase biosynthetic process	1.38E-03
37	GO:1901332: negative regulation of lateral root development	1.38E-03
38	GO:0006572: tyrosine catabolic process	1.38E-03
39	GO:0019438: aromatic compound biosynthetic process	1.38E-03
40	GO:0006624: vacuolar protein processing	1.38E-03
41	GO:0006020: inositol metabolic process	1.38E-03
42	GO:0010601: positive regulation of auxin biosynthetic process	1.38E-03
43	GO:0071215: cellular response to abscisic acid stimulus	1.76E-03
44	GO:1902584: positive regulation of response to water deprivation	1.84E-03
45	GO:0006536: glutamate metabolic process	1.84E-03
46	GO:0010600: regulation of auxin biosynthetic process	1.84E-03
47	GO:1901002: positive regulation of response to salt stress	1.84E-03
48	GO:0006646: phosphatidylethanolamine biosynthetic process	1.84E-03
49	GO:0009687: abscisic acid metabolic process	1.84E-03
50	GO:0048442: sepal development	1.84E-03
51	GO:0048443: stamen development	1.92E-03
52	GO:0051603: proteolysis involved in cellular protein catabolic process	2.02E-03
53	GO:0009651: response to salt stress	2.18E-03
54	GO:0043097: pyrimidine nucleoside salvage	2.35E-03
55	GO:0046323: glucose import	2.42E-03
56	GO:0048544: recognition of pollen	2.60E-03
57	GO:0006206: pyrimidine nucleobase metabolic process	2.90E-03
58	GO:0000741: karyogamy	2.90E-03
59	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.90E-03
60	GO:0042732: D-xylose metabolic process	2.90E-03
61	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.49E-03
62	GO:0071470: cellular response to osmotic stress	3.49E-03
63	GO:0044550: secondary metabolite biosynthetic process	3.52E-03
64	GO:0048437: floral organ development	4.12E-03
65	GO:0009396: folic acid-containing compound biosynthetic process	4.12E-03
66	GO:0006333: chromatin assembly or disassembly	4.12E-03
67	GO:0010044: response to aluminum ion	4.12E-03
68	GO:0098869: cellular oxidant detoxification	4.12E-03
69	GO:0009395: phospholipid catabolic process	4.12E-03
70	GO:0001666: response to hypoxia	4.30E-03
71	GO:0009061: anaerobic respiration	4.77E-03
72	GO:0010928: regulation of auxin mediated signaling pathway	4.77E-03
73	GO:0009819: drought recovery	4.77E-03
74	GO:0009415: response to water	4.77E-03
75	GO:0006102: isocitrate metabolic process	4.77E-03
76	GO:0016559: peroxisome fission	4.77E-03
77	GO:0048573: photoperiodism, flowering	5.06E-03
78	GO:0009827: plant-type cell wall modification	5.47E-03
79	GO:0001510: RNA methylation	5.47E-03
80	GO:0009808: lignin metabolic process	5.47E-03
81	GO:0008219: cell death	5.61E-03
82	GO:0007165: signal transduction	5.62E-03
83	GO:0006098: pentose-phosphate shunt	6.20E-03
84	GO:0046916: cellular transition metal ion homeostasis	6.20E-03
85	GO:0035999: tetrahydrofolate interconversion	6.96E-03
86	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.96E-03
87	GO:0008202: steroid metabolic process	6.96E-03
88	GO:0006099: tricarboxylic acid cycle	7.44E-03
89	GO:0055062: phosphate ion homeostasis	7.75E-03
90	GO:0048441: petal development	7.75E-03
91	GO:0009641: shade avoidance	7.75E-03
92	GO:0009682: induced systemic resistance	8.58E-03
93	GO:0052544: defense response by callose deposition in cell wall	8.58E-03
94	GO:0006378: mRNA polyadenylation	8.58E-03
95	GO:0046686: response to cadmium ion	9.08E-03
96	GO:0006807: nitrogen compound metabolic process	1.03E-02
97	GO:0050826: response to freezing	1.03E-02
98	GO:0000165: MAPK cascade	1.11E-02
99	GO:0048440: carpel development	1.12E-02
100	GO:0006541: glutamine metabolic process	1.12E-02
101	GO:0007034: vacuolar transport	1.12E-02
102	GO:0006970: response to osmotic stress	1.17E-02
103	GO:0009414: response to water deprivation	1.19E-02
104	GO:0005985: sucrose metabolic process	1.22E-02
105	GO:0019853: L-ascorbic acid biosynthetic process	1.22E-02
106	GO:0010030: positive regulation of seed germination	1.22E-02
107	GO:0007031: peroxisome organization	1.22E-02
108	GO:0042742: defense response to bacterium	1.24E-02
109	GO:0034976: response to endoplasmic reticulum stress	1.32E-02
110	GO:0006857: oligopeptide transport	1.33E-02
111	GO:0016575: histone deacetylation	1.52E-02
112	GO:0009695: jasmonic acid biosynthetic process	1.52E-02
113	GO:0009269: response to desiccation	1.62E-02
114	GO:0031408: oxylipin biosynthetic process	1.62E-02
115	GO:0010431: seed maturation	1.62E-02
116	GO:0009737: response to abscisic acid	1.66E-02
117	GO:0035428: hexose transmembrane transport	1.73E-02
118	GO:0071456: cellular response to hypoxia	1.73E-02
119	GO:0019748: secondary metabolic process	1.73E-02
120	GO:0009693: ethylene biosynthetic process	1.84E-02
121	GO:0006012: galactose metabolic process	1.84E-02
122	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.07E-02
123	GO:0006511: ubiquitin-dependent protein catabolic process	2.12E-02
124	GO:0055114: oxidation-reduction process	2.17E-02
125	GO:0042391: regulation of membrane potential	2.19E-02
126	GO:0080022: primary root development	2.19E-02
127	GO:0010051: xylem and phloem pattern formation	2.19E-02
128	GO:0015991: ATP hydrolysis coupled proton transport	2.19E-02
129	GO:0042631: cellular response to water deprivation	2.19E-02
130	GO:0009408: response to heat	2.28E-02
131	GO:0009960: endosperm development	2.31E-02
132	GO:0071472: cellular response to salt stress	2.31E-02
133	GO:0010154: fruit development	2.31E-02
134	GO:0006520: cellular amino acid metabolic process	2.31E-02
135	GO:0010197: polar nucleus fusion	2.31E-02
136	GO:0010182: sugar mediated signaling pathway	2.31E-02
137	GO:0009646: response to absence of light	2.43E-02
138	GO:0010183: pollen tube guidance	2.55E-02
139	GO:0008654: phospholipid biosynthetic process	2.55E-02
140	GO:0009556: microsporogenesis	2.55E-02
141	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.68E-02
142	GO:0006633: fatty acid biosynthetic process	2.79E-02
143	GO:0071281: cellular response to iron ion	2.94E-02
144	GO:0019760: glucosinolate metabolic process	3.07E-02
145	GO:0051607: defense response to virus	3.34E-02
146	GO:0009911: positive regulation of flower development	3.48E-02
147	GO:0007166: cell surface receptor signaling pathway	3.50E-02
148	GO:0010029: regulation of seed germination	3.63E-02
149	GO:0010468: regulation of gene expression	3.65E-02
150	GO:0009617: response to bacterium	3.65E-02
151	GO:0042128: nitrate assimilation	3.77E-02
152	GO:0006950: response to stress	3.91E-02
153	GO:0006811: ion transport	4.51E-02
154	GO:0009631: cold acclimation	4.66E-02
155	GO:0010043: response to zinc ion	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
3	GO:0009045: xylose isomerase activity	0.00E+00
4	GO:0004334: fumarylacetoacetase activity	0.00E+00
5	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
6	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
7	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
8	GO:0050897: cobalt ion binding	9.37E-05
9	GO:0016301: kinase activity	9.83E-05
10	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	2.70E-04
11	GO:0046870: cadmium ion binding	2.70E-04
12	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.70E-04
13	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.70E-04
14	GO:0003867: 4-aminobutyrate transaminase activity	2.70E-04
15	GO:0030275: LRR domain binding	2.70E-04
16	GO:0009679: hexose:proton symporter activity	2.70E-04
17	GO:0035671: enone reductase activity	2.70E-04
18	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	5.94E-04
19	GO:0004839: ubiquitin activating enzyme activity	5.94E-04
20	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.94E-04
21	GO:0004352: glutamate dehydrogenase (NAD+) activity	5.94E-04
22	GO:0004329: formate-tetrahydrofolate ligase activity	5.94E-04
23	GO:0047209: coniferyl-alcohol glucosyltransferase activity	5.94E-04
24	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	5.94E-04
25	GO:0004566: beta-glucuronidase activity	5.94E-04
26	GO:0032791: lead ion binding	5.94E-04
27	GO:0004609: phosphatidylserine decarboxylase activity	5.94E-04
28	GO:0003994: aconitate hydratase activity	5.94E-04
29	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	5.94E-04
30	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	5.94E-04
31	GO:0017150: tRNA dihydrouridine synthase activity	9.62E-04
32	GO:0005524: ATP binding	1.12E-03
33	GO:0048027: mRNA 5'-UTR binding	1.38E-03
34	GO:0004108: citrate (Si)-synthase activity	1.38E-03
35	GO:0030527: structural constituent of chromatin	1.38E-03
36	GO:0003883: CTP synthase activity	1.38E-03
37	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.38E-03
38	GO:0004300: enoyl-CoA hydratase activity	1.38E-03
39	GO:0005215: transporter activity	1.41E-03
40	GO:0004707: MAP kinase activity	1.48E-03
41	GO:0003995: acyl-CoA dehydrogenase activity	1.84E-03
42	GO:0004737: pyruvate decarboxylase activity	1.84E-03
43	GO:0015145: monosaccharide transmembrane transporter activity	2.35E-03
44	GO:0008641: small protein activating enzyme activity	2.35E-03
45	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.35E-03
46	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.35E-03
47	GO:0003997: acyl-CoA oxidase activity	2.35E-03
48	GO:0010294: abscisic acid glucosyltransferase activity	2.35E-03
49	GO:0004629: phospholipase C activity	2.90E-03
50	GO:0000293: ferric-chelate reductase activity	2.90E-03
51	GO:0019137: thioglucosidase activity	2.90E-03
52	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.90E-03
53	GO:0030976: thiamine pyrophosphate binding	2.90E-03
54	GO:0004197: cysteine-type endopeptidase activity	3.18E-03
55	GO:0070300: phosphatidic acid binding	3.49E-03
56	GO:0004849: uridine kinase activity	3.49E-03
57	GO:0004602: glutathione peroxidase activity	3.49E-03
58	GO:0004435: phosphatidylinositol phospholipase C activity	3.49E-03
59	GO:0019887: protein kinase regulator activity	3.49E-03
60	GO:0004620: phospholipase activity	4.12E-03
61	GO:0016831: carboxy-lyase activity	4.12E-03
62	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.59E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	4.77E-03
64	GO:0004525: ribonuclease III activity	4.77E-03
65	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.47E-03
66	GO:0001104: RNA polymerase II transcription cofactor activity	5.47E-03
67	GO:0004674: protein serine/threonine kinase activity	5.80E-03
68	GO:0005351: sugar:proton symporter activity	5.90E-03
69	GO:0000989: transcription factor activity, transcription factor binding	6.20E-03
70	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.20E-03
71	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.96E-03
72	GO:0008171: O-methyltransferase activity	7.75E-03
73	GO:0004177: aminopeptidase activity	8.58E-03
74	GO:0047372: acylglycerol lipase activity	8.58E-03
75	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.44E-03
76	GO:0004565: beta-galactosidase activity	1.03E-02
77	GO:0008081: phosphoric diester hydrolase activity	1.03E-02
78	GO:0004175: endopeptidase activity	1.12E-02
79	GO:0030552: cAMP binding	1.22E-02
80	GO:0030553: cGMP binding	1.22E-02
81	GO:0004407: histone deacetylase activity	1.42E-02
82	GO:0045735: nutrient reservoir activity	1.47E-02
83	GO:0043424: protein histidine kinase binding	1.52E-02
84	GO:0005216: ion channel activity	1.52E-02
85	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.62E-02
86	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.62E-02
87	GO:0003756: protein disulfide isomerase activity	1.95E-02
88	GO:0030551: cyclic nucleotide binding	2.19E-02
89	GO:0005249: voltage-gated potassium channel activity	2.19E-02
90	GO:0005507: copper ion binding	2.27E-02
91	GO:0019825: oxygen binding	2.27E-02
92	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.28E-02
93	GO:0004672: protein kinase activity	2.39E-02
94	GO:0005355: glucose transmembrane transporter activity	2.43E-02
95	GO:0015144: carbohydrate transmembrane transporter activity	2.66E-02
96	GO:0005200: structural constituent of cytoskeleton	3.21E-02
97	GO:0005509: calcium ion binding	3.38E-02
98	GO:0008194: UDP-glycosyltransferase activity	3.42E-02
99	GO:0005506: iron ion binding	3.72E-02
100	GO:0044212: transcription regulatory region DNA binding	3.80E-02
101	GO:0042802: identical protein binding	3.88E-02
102	GO:0102483: scopolin beta-glucosidase activity	3.91E-02
103	GO:0030247: polysaccharide binding	3.91E-02
104	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.06E-02
105	GO:0003824: catalytic activity	4.35E-02
106	GO:0015238: drug transmembrane transporter activity	4.36E-02
107	GO:0005096: GTPase activator activity	4.36E-02
108	GO:0008270: zinc ion binding	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0000323: lytic vacuole	2.72E-05
2	GO:0005777: peroxisome	3.18E-04
3	GO:0005886: plasma membrane	3.55E-04
4	GO:0005773: vacuole	4.04E-04
5	GO:0005849: mRNA cleavage factor complex	1.38E-03
6	GO:0009898: cytoplasmic side of plasma membrane	1.84E-03
7	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.84E-03
8	GO:0005829: cytosol	2.77E-03
9	GO:0070847: core mediator complex	2.90E-03
10	GO:0005851: eukaryotic translation initiation factor 2B complex	2.90E-03
11	GO:0000815: ESCRT III complex	3.49E-03
12	GO:0005779: integral component of peroxisomal membrane	5.47E-03
13	GO:0009514: glyoxysome	5.47E-03
14	GO:0043231: intracellular membrane-bounded organelle	6.51E-03
15	GO:0016021: integral component of membrane	8.10E-03
16	GO:0005765: lysosomal membrane	8.58E-03
17	GO:0005764: lysosome	1.12E-02
18	GO:0031965: nuclear membrane	2.55E-02
19	GO:0016592: mediator complex	2.81E-02
20	GO:0000785: chromatin	2.81E-02
21	GO:0009705: plant-type vacuole membrane	3.06E-02
22	GO:0009506: plasmodesma	3.09E-02
23	GO:0005783: endoplasmic reticulum	3.13E-02
24	GO:0005778: peroxisomal membrane	3.21E-02
25	GO:0016020: membrane	3.82E-02
26	GO:0005737: cytoplasm	4.60E-02
27	GO:0000786: nucleosome	4.82E-02