GO Enrichment Analysis of Co-expressed Genes with
AT2G41540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0017038: protein import | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:1901259: chloroplast rRNA processing | 2.70E-06 |
| 4 | GO:0000373: Group II intron splicing | 8.46E-06 |
| 5 | GO:0042371: vitamin K biosynthetic process | 2.19E-05 |
| 6 | GO:0034337: RNA folding | 2.19E-05 |
| 7 | GO:0010289: homogalacturonan biosynthetic process | 5.64E-05 |
| 8 | GO:0009451: RNA modification | 7.85E-05 |
| 9 | GO:0006013: mannose metabolic process | 9.94E-05 |
| 10 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 9.94E-05 |
| 11 | GO:0010239: chloroplast mRNA processing | 1.49E-04 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 1.89E-04 |
| 13 | GO:0010109: regulation of photosynthesis | 2.04E-04 |
| 14 | GO:0010236: plastoquinone biosynthetic process | 2.62E-04 |
| 15 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.62E-04 |
| 16 | GO:0003006: developmental process involved in reproduction | 3.24E-04 |
| 17 | GO:0042372: phylloquinone biosynthetic process | 3.89E-04 |
| 18 | GO:0048280: vesicle fusion with Golgi apparatus | 3.89E-04 |
| 19 | GO:0009772: photosynthetic electron transport in photosystem II | 4.56E-04 |
| 20 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 4.56E-04 |
| 21 | GO:0006605: protein targeting | 5.25E-04 |
| 22 | GO:0048564: photosystem I assembly | 5.25E-04 |
| 23 | GO:0045292: mRNA cis splicing, via spliceosome | 5.25E-04 |
| 24 | GO:0006353: DNA-templated transcription, termination | 5.25E-04 |
| 25 | GO:0032544: plastid translation | 5.98E-04 |
| 26 | GO:0006535: cysteine biosynthetic process from serine | 8.27E-04 |
| 27 | GO:0006896: Golgi to vacuole transport | 8.27E-04 |
| 28 | GO:2000012: regulation of auxin polar transport | 1.07E-03 |
| 29 | GO:0019344: cysteine biosynthetic process | 1.43E-03 |
| 30 | GO:0040007: growth | 1.83E-03 |
| 31 | GO:0042147: retrograde transport, endosome to Golgi | 2.04E-03 |
| 32 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.14E-03 |
| 33 | GO:0042335: cuticle development | 2.15E-03 |
| 34 | GO:0009958: positive gravitropism | 2.26E-03 |
| 35 | GO:0015979: photosynthesis | 2.35E-03 |
| 36 | GO:0009646: response to absence of light | 2.38E-03 |
| 37 | GO:0006623: protein targeting to vacuole | 2.49E-03 |
| 38 | GO:0006891: intra-Golgi vesicle-mediated transport | 2.61E-03 |
| 39 | GO:0010090: trichome morphogenesis | 2.85E-03 |
| 40 | GO:0009567: double fertilization forming a zygote and endosperm | 2.97E-03 |
| 41 | GO:0006888: ER to Golgi vesicle-mediated transport | 3.73E-03 |
| 42 | GO:0010311: lateral root formation | 4.14E-03 |
| 43 | GO:0016051: carbohydrate biosynthetic process | 4.70E-03 |
| 44 | GO:0009735: response to cytokinin | 4.88E-03 |
| 45 | GO:0035556: intracellular signal transduction | 5.63E-03 |
| 46 | GO:0006855: drug transmembrane transport | 6.23E-03 |
| 47 | GO:0006364: rRNA processing | 6.88E-03 |
| 48 | GO:0048316: seed development | 7.90E-03 |
| 49 | GO:0010468: regulation of gene expression | 1.46E-02 |
| 50 | GO:0009658: chloroplast organization | 1.76E-02 |
| 51 | GO:0009860: pollen tube growth | 1.86E-02 |
| 52 | GO:0006886: intracellular protein transport | 2.38E-02 |
| 53 | GO:0006508: proteolysis | 3.33E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 3 | GO:0016851: magnesium chelatase activity | 3.49E-07 |
| 4 | GO:0019843: rRNA binding | 4.66E-05 |
| 5 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 9.94E-05 |
| 6 | GO:0004659: prenyltransferase activity | 2.04E-04 |
| 7 | GO:0003723: RNA binding | 2.35E-04 |
| 8 | GO:0005524: ATP binding | 3.01E-04 |
| 9 | GO:0004559: alpha-mannosidase activity | 3.89E-04 |
| 10 | GO:0004124: cysteine synthase activity | 3.89E-04 |
| 11 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 5.25E-04 |
| 12 | GO:0008312: 7S RNA binding | 5.25E-04 |
| 13 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 8.27E-04 |
| 14 | GO:0009982: pseudouridine synthase activity | 1.07E-03 |
| 15 | GO:0004176: ATP-dependent peptidase activity | 1.63E-03 |
| 16 | GO:0004707: MAP kinase activity | 1.63E-03 |
| 17 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.73E-03 |
| 18 | GO:0003729: mRNA binding | 2.65E-03 |
| 19 | GO:0004518: nuclease activity | 2.73E-03 |
| 20 | GO:0008237: metallopeptidase activity | 3.09E-03 |
| 21 | GO:0004519: endonuclease activity | 3.29E-03 |
| 22 | GO:0008236: serine-type peptidase activity | 3.87E-03 |
| 23 | GO:0004222: metalloendopeptidase activity | 4.28E-03 |
| 24 | GO:0016887: ATPase activity | 4.67E-03 |
| 25 | GO:0000149: SNARE binding | 5.00E-03 |
| 26 | GO:0005484: SNAP receptor activity | 5.60E-03 |
| 27 | GO:0043621: protein self-association | 5.91E-03 |
| 28 | GO:0030246: carbohydrate binding | 7.18E-03 |
| 29 | GO:0008026: ATP-dependent helicase activity | 9.16E-03 |
| 30 | GO:0030170: pyridoxal phosphate binding | 1.11E-02 |
| 31 | GO:0004252: serine-type endopeptidase activity | 1.11E-02 |
| 32 | GO:0008565: protein transporter activity | 1.17E-02 |
| 33 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.53E-02 |
| 34 | GO:0003924: GTPase activity | 2.71E-02 |
| 35 | GO:0016757: transferase activity, transferring glycosyl groups | 3.69E-02 |
| 36 | GO:0005515: protein binding | 4.36E-02 |
| 37 | GO:0016740: transferase activity | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.10E-07 |
| 2 | GO:0010007: magnesium chelatase complex | 1.42E-07 |
| 3 | GO:0009570: chloroplast stroma | 1.83E-06 |
| 4 | GO:0080085: signal recognition particle, chloroplast targeting | 5.64E-05 |
| 5 | GO:0009509: chromoplast | 9.94E-05 |
| 6 | GO:0009941: chloroplast envelope | 4.71E-04 |
| 7 | GO:0012507: ER to Golgi transport vesicle membrane | 5.25E-04 |
| 8 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 5.98E-04 |
| 9 | GO:0009534: chloroplast thylakoid | 8.51E-04 |
| 10 | GO:0090404: pollen tube tip | 9.07E-04 |
| 11 | GO:0032040: small-subunit processome | 9.89E-04 |
| 12 | GO:0005802: trans-Golgi network | 1.20E-03 |
| 13 | GO:0005768: endosome | 1.41E-03 |
| 14 | GO:0031969: chloroplast membrane | 2.07E-03 |
| 15 | GO:0043231: intracellular membrane-bounded organelle | 3.33E-03 |
| 16 | GO:0009535: chloroplast thylakoid membrane | 4.45E-03 |
| 17 | GO:0031902: late endosome membrane | 5.30E-03 |
| 18 | GO:0031977: thylakoid lumen | 5.30E-03 |
| 19 | GO:0031201: SNARE complex | 5.30E-03 |
| 20 | GO:0009706: chloroplast inner membrane | 8.79E-03 |
| 21 | GO:0005618: cell wall | 9.17E-03 |
| 22 | GO:0009543: chloroplast thylakoid lumen | 1.03E-02 |
| 23 | GO:0009536: plastid | 1.33E-02 |
| 24 | GO:0005794: Golgi apparatus | 1.80E-02 |
| 25 | GO:0005886: plasma membrane | 2.16E-02 |
| 26 | GO:0048046: apoplast | 3.94E-02 |
| 27 | GO:0009579: thylakoid | 4.63E-02 |