co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41330

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901038: cyanidin 3-O-glucoside metabolic process	0.00E+00
2	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
3	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
4	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
5	GO:0006792: regulation of sulfur utilization	0.00E+00
6	GO:0009813: flavonoid biosynthetic process	9.33E-08
7	GO:0009751: response to salicylic acid	2.92E-06
8	GO:0080167: response to karrikin	8.76E-06
9	GO:0010200: response to chitin	9.76E-06
10	GO:0009733: response to auxin	1.01E-05
11	GO:0051555: flavonol biosynthetic process	1.62E-05
12	GO:0009718: anthocyanin-containing compound biosynthetic process	3.25E-05
13	GO:0030154: cell differentiation	5.39E-05
14	GO:0009411: response to UV	1.18E-04
15	GO:0000271: polysaccharide biosynthetic process	1.68E-04
16	GO:0045489: pectin biosynthetic process	1.87E-04
17	GO:0030162: regulation of proteolysis	2.16E-04
18	GO:0010224: response to UV-B	2.27E-04
19	GO:0009753: response to jasmonic acid	2.33E-04
20	GO:0050691: regulation of defense response to virus by host	2.39E-04
21	GO:0033481: galacturonate biosynthetic process	2.39E-04
22	GO:0051973: positive regulation of telomerase activity	2.39E-04
23	GO:0048438: floral whorl development	2.39E-04
24	GO:0055063: sulfate ion homeostasis	2.39E-04
25	GO:0046500: S-adenosylmethionine metabolic process	2.39E-04
26	GO:1901537: positive regulation of DNA demethylation	2.39E-04
27	GO:0031539: positive regulation of anthocyanin metabolic process	2.39E-04
28	GO:0010099: regulation of photomorphogenesis	2.67E-04
29	GO:0010411: xyloglucan metabolic process	5.07E-04
30	GO:0009698: phenylpropanoid metabolic process	5.19E-04
31	GO:0010541: acropetal auxin transport	5.29E-04
32	GO:0007154: cell communication	5.29E-04
33	GO:0071497: cellular response to freezing	5.29E-04
34	GO:0010220: positive regulation of vernalization response	5.29E-04
35	GO:1900386: positive regulation of flavonol biosynthetic process	5.29E-04
36	GO:0071395: cellular response to jasmonic acid stimulus	5.29E-04
37	GO:0010540: basipetal auxin transport	7.56E-04
38	GO:0009225: nucleotide-sugar metabolic process	8.45E-04
39	GO:0010581: regulation of starch biosynthetic process	8.60E-04
40	GO:0080168: abscisic acid transport	8.60E-04
41	GO:0010253: UDP-rhamnose biosynthetic process	8.60E-04
42	GO:0040009: regulation of growth rate	8.60E-04
43	GO:0019419: sulfate reduction	8.60E-04
44	GO:0009739: response to gibberellin	1.04E-03
45	GO:0042546: cell wall biogenesis	1.12E-03
46	GO:0009743: response to carbohydrate	1.23E-03
47	GO:0009963: positive regulation of flavonoid biosynthetic process	1.23E-03
48	GO:1902358: sulfate transmembrane transport	1.23E-03
49	GO:0009737: response to abscisic acid	1.31E-03
50	GO:0031347: regulation of defense response	1.35E-03
51	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.36E-03
52	GO:0010017: red or far-red light signaling pathway	1.36E-03
53	GO:0040007: growth	1.48E-03
54	GO:0009585: red, far-red light phototransduction	1.55E-03
55	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.58E-03
56	GO:0019722: calcium-mediated signaling	1.61E-03
57	GO:0034613: cellular protein localization	1.64E-03
58	GO:0009958: positive gravitropism	2.03E-03
59	GO:0009741: response to brassinosteroid	2.03E-03
60	GO:0006544: glycine metabolic process	2.09E-03
61	GO:0071368: cellular response to cytokinin stimulus	2.09E-03
62	GO:0010438: cellular response to sulfur starvation	2.09E-03
63	GO:0009723: response to ethylene	2.13E-03
64	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.50E-03
65	GO:0000060: protein import into nucleus, translocation	2.57E-03
66	GO:0060918: auxin transport	2.57E-03
67	GO:1902456: regulation of stomatal opening	2.57E-03
68	GO:0006563: L-serine metabolic process	2.57E-03
69	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.57E-03
70	GO:0042732: D-xylose metabolic process	2.57E-03
71	GO:0010315: auxin efflux	2.57E-03
72	GO:0071555: cell wall organization	2.68E-03
73	GO:0010076: maintenance of floral meristem identity	3.09E-03
74	GO:0010077: maintenance of inflorescence meristem identity	3.09E-03
75	GO:0006355: regulation of transcription, DNA-templated	3.16E-03
76	GO:0007267: cell-cell signaling	3.21E-03
77	GO:0050829: defense response to Gram-negative bacterium	3.64E-03
78	GO:0006400: tRNA modification	3.64E-03
79	GO:0051510: regulation of unidimensional cell growth	3.64E-03
80	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.81E-03
81	GO:0010439: regulation of glucosinolate biosynthetic process	4.23E-03
82	GO:2000070: regulation of response to water deprivation	4.23E-03
83	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.23E-03
84	GO:0006629: lipid metabolic process	4.28E-03
85	GO:0044030: regulation of DNA methylation	4.84E-03
86	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.84E-03
87	GO:0007623: circadian rhythm	4.85E-03
88	GO:0010218: response to far red light	5.18E-03
89	GO:0019432: triglyceride biosynthetic process	5.48E-03
90	GO:0051865: protein autoubiquitination	5.48E-03
91	GO:0009056: catabolic process	5.48E-03
92	GO:0016051: carbohydrate biosynthetic process	5.96E-03
93	GO:0009638: phototropism	6.15E-03
94	GO:0035999: tetrahydrofolate interconversion	6.15E-03
95	GO:0000103: sulfate assimilation	6.85E-03
96	GO:0043069: negative regulation of programmed cell death	6.85E-03
97	GO:0042542: response to hydrogen peroxide	7.38E-03
98	GO:1903507: negative regulation of nucleic acid-templated transcription	7.58E-03
99	GO:0000272: polysaccharide catabolic process	7.58E-03
100	GO:0010015: root morphogenesis	7.58E-03
101	GO:0000038: very long-chain fatty acid metabolic process	7.58E-03
102	GO:0010114: response to red light	7.68E-03
103	GO:0016024: CDP-diacylglycerol biosynthetic process	8.33E-03
104	GO:0010582: floral meristem determinacy	8.33E-03
105	GO:0016925: protein sumoylation	8.33E-03
106	GO:0030036: actin cytoskeleton organization	9.11E-03
107	GO:0018107: peptidyl-threonine phosphorylation	9.11E-03
108	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.31E-03
109	GO:0009738: abscisic acid-activated signaling pathway	9.73E-03
110	GO:0034605: cellular response to heat	9.92E-03
111	GO:0010143: cutin biosynthetic process	9.92E-03
112	GO:0002237: response to molecule of bacterial origin	9.92E-03
113	GO:0005985: sucrose metabolic process	1.07E-02
114	GO:0009969: xyloglucan biosynthetic process	1.07E-02
115	GO:0010167: response to nitrate	1.07E-02
116	GO:0042753: positive regulation of circadian rhythm	1.16E-02
117	GO:0006636: unsaturated fatty acid biosynthetic process	1.16E-02
118	GO:0046777: protein autophosphorylation	1.21E-02
119	GO:2000377: regulation of reactive oxygen species metabolic process	1.25E-02
120	GO:0005992: trehalose biosynthetic process	1.25E-02
121	GO:0006487: protein N-linked glycosylation	1.25E-02
122	GO:0019344: cysteine biosynthetic process	1.25E-02
123	GO:0016998: cell wall macromolecule catabolic process	1.43E-02
124	GO:0009742: brassinosteroid mediated signaling pathway	1.57E-02
125	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.62E-02
126	GO:0042127: regulation of cell proliferation	1.72E-02
127	GO:0010584: pollen exine formation	1.72E-02
128	GO:0010118: stomatal movement	1.93E-02
129	GO:0048653: anther development	1.93E-02
130	GO:0009845: seed germination	2.01E-02
131	GO:0010182: sugar mediated signaling pathway	2.03E-02
132	GO:0009791: post-embryonic development	2.25E-02
133	GO:0002229: defense response to oomycetes	2.36E-02
134	GO:0006351: transcription, DNA-templated	2.46E-02
135	GO:0010583: response to cyclopentenone	2.47E-02
136	GO:0009873: ethylene-activated signaling pathway	2.52E-02
137	GO:1901657: glycosyl compound metabolic process	2.59E-02
138	GO:0010252: auxin homeostasis	2.71E-02
139	GO:0009828: plant-type cell wall loosening	2.71E-02
140	GO:0019760: glucosinolate metabolic process	2.71E-02
141	GO:0009734: auxin-activated signaling pathway	2.80E-02
142	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.87E-02
143	GO:0001666: response to hypoxia	3.07E-02
144	GO:0048573: photoperiodism, flowering	3.45E-02
145	GO:0016311: dephosphorylation	3.58E-02
146	GO:0009826: unidimensional cell growth	3.81E-02
147	GO:0009611: response to wounding	3.83E-02
148	GO:0010311: lateral root formation	3.84E-02
149	GO:0048767: root hair elongation	3.84E-02
150	GO:0035556: intracellular signal transduction	3.99E-02
151	GO:0048527: lateral root development	4.11E-02
152	GO:0010119: regulation of stomatal movement	4.11E-02
153	GO:0006970: response to osmotic stress	4.26E-02
154	GO:0009860: pollen tube growth	4.26E-02
155	GO:0009637: response to blue light	4.39E-02
156	GO:0045893: positive regulation of transcription, DNA-templated	4.42E-02
157	GO:0009409: response to cold	4.55E-02
158	GO:0048366: leaf development	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
2	GO:0045552: dihydrokaempferol 4-reductase activity	0.00E+00
3	GO:0047213: anthocyanidin 3-O-glucosyltransferase activity	0.00E+00
4	GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity	0.00E+00
5	GO:0047890: flavanone 4-reductase activity	0.00E+00
6	GO:0045486: naringenin 3-dioxygenase activity	0.00E+00
7	GO:0016711: flavonoid 3'-monooxygenase activity	0.00E+00
8	GO:0045430: chalcone isomerase activity	3.99E-05
9	GO:0035252: UDP-xylosyltransferase activity	9.33E-05
10	GO:0043565: sequence-specific DNA binding	1.88E-04
11	GO:0044212: transcription regulatory region DNA binding	1.99E-04
12	GO:0090440: abscisic acid transporter activity	2.39E-04
13	GO:0080132: fatty acid alpha-hydroxylase activity	2.39E-04
14	GO:0050377: UDP-glucose 4,6-dehydratase activity	5.29E-04
15	GO:0050736: O-malonyltransferase activity	5.29E-04
16	GO:0009973: adenylyl-sulfate reductase activity	5.29E-04
17	GO:0048531: beta-1,3-galactosyltransferase activity	5.29E-04
18	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	5.29E-04
19	GO:0008460: dTDP-glucose 4,6-dehydratase activity	5.29E-04
20	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	5.29E-04
21	GO:0010280: UDP-L-rhamnose synthase activity	5.29E-04
22	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	6.71E-04
23	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	8.11E-04
24	GO:0003712: transcription cofactor activity	8.45E-04
25	GO:0008253: 5'-nucleotidase activity	8.60E-04
26	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.71E-04
27	GO:0031418: L-ascorbic acid binding	1.04E-03
28	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.23E-03
29	GO:0033843: xyloglucan 6-xylosyltransferase activity	1.23E-03
30	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.36E-03
31	GO:0050378: UDP-glucuronate 4-epimerase activity	1.64E-03
32	GO:0031625: ubiquitin protein ligase binding	1.76E-03
33	GO:0004402: histone acetyltransferase activity	1.89E-03
34	GO:0004372: glycine hydroxymethyltransferase activity	2.09E-03
35	GO:0031386: protein tag	2.09E-03
36	GO:0045431: flavonol synthase activity	2.09E-03
37	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.16E-03
38	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.16E-03
39	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.50E-03
40	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.57E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.57E-03
42	GO:0016161: beta-amylase activity	3.09E-03
43	GO:0016758: transferase activity, transferring hexosyl groups	3.11E-03
44	GO:0019899: enzyme binding	3.64E-03
45	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.64E-03
46	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.64E-03
47	GO:0016621: cinnamoyl-CoA reductase activity	3.64E-03
48	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.80E-03
49	GO:0016757: transferase activity, transferring glycosyl groups	4.00E-03
50	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.23E-03
51	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.25E-03
52	GO:0004806: triglyceride lipase activity	4.25E-03
53	GO:0008271: secondary active sulfate transmembrane transporter activity	4.84E-03
54	GO:0016207: 4-coumarate-CoA ligase activity	5.48E-03
55	GO:0009672: auxin:proton symporter activity	6.15E-03
56	GO:0003677: DNA binding	6.34E-03
57	GO:0004805: trehalose-phosphatase activity	6.85E-03
58	GO:0008327: methyl-CpG binding	7.58E-03
59	GO:0004860: protein kinase inhibitor activity	7.58E-03
60	GO:0046982: protein heterodimerization activity	8.26E-03
61	GO:0015116: sulfate transmembrane transporter activity	8.33E-03
62	GO:0010329: auxin efflux transmembrane transporter activity	9.11E-03
63	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.92E-03
64	GO:0003714: transcription corepressor activity	1.25E-02
65	GO:0004176: ATP-dependent peptidase activity	1.43E-02
66	GO:0035251: UDP-glucosyltransferase activity	1.43E-02
67	GO:0004672: protein kinase activity	1.76E-02
68	GO:0001085: RNA polymerase II transcription factor binding	2.03E-02
69	GO:0050662: coenzyme binding	2.14E-02
70	GO:0016853: isomerase activity	2.14E-02
71	GO:0004674: protein serine/threonine kinase activity	2.37E-02
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.59E-02
73	GO:0016791: phosphatase activity	2.71E-02
74	GO:0008237: metallopeptidase activity	2.83E-02
75	GO:0005200: structural constituent of cytoskeleton	2.83E-02
76	GO:0008194: UDP-glycosyltransferase activity	2.87E-02
77	GO:0005515: protein binding	3.10E-02
78	GO:0008375: acetylglucosaminyltransferase activity	3.32E-02
79	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.32E-02
80	GO:0030247: polysaccharide binding	3.45E-02
81	GO:0102483: scopolin beta-glucosidase activity	3.45E-02
82	GO:0015238: drug transmembrane transporter activity	3.84E-02
83	GO:0004222: metalloendopeptidase activity	3.97E-02
84	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.11E-02
85	GO:0003682: chromatin binding	4.18E-02
86	GO:0016491: oxidoreductase activity	4.37E-02
87	GO:0008422: beta-glucosidase activity	4.67E-02
88	GO:0016740: transferase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0090568: nuclear transcriptional repressor complex	0.00E+00
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	9.64E-06
3	GO:0009505: plant-type cell wall	1.25E-03
4	GO:0031225: anchored component of membrane	1.60E-03
5	GO:0010369: chromocenter	3.09E-03
6	GO:0009506: plasmodesma	3.97E-03
7	GO:0019005: SCF ubiquitin ligase complex	4.70E-03
8	GO:0005615: extracellular space	5.60E-03
9	GO:0046658: anchored component of plasma membrane	6.93E-03
10	GO:0005794: Golgi apparatus	9.86E-03
11	GO:0048046: apoplast	1.26E-02
12	GO:0005770: late endosome	2.03E-02
13	GO:0043231: intracellular membrane-bounded organelle	2.06E-02
14	GO:0071944: cell periphery	2.59E-02
15	GO:0032580: Golgi cisterna membrane	2.71E-02
16	GO:0005667: transcription factor complex	3.32E-02
17	GO:0005618: cell wall	3.78E-02
18	GO:0000786: nucleosome	4.25E-02
19	GO:0000139: Golgi membrane	4.55E-02
20	GO:0005886: plasma membrane	4.72E-02
21	GO:0031902: late endosome membrane	4.95E-02