co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G40540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0045176: apical protein localization	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
8	GO:0042493: response to drug	0.00E+00
9	GO:0006399: tRNA metabolic process	0.00E+00
10	GO:0008064: regulation of actin polymerization or depolymerization	0.00E+00
11	GO:0051493: regulation of cytoskeleton organization	0.00E+00
12	GO:0006412: translation	1.13E-09
13	GO:0032544: plastid translation	3.32E-08
14	GO:0042254: ribosome biogenesis	1.66E-06
15	GO:0042549: photosystem II stabilization	6.61E-05
16	GO:0000413: protein peptidyl-prolyl isomerization	1.09E-04
17	GO:0009658: chloroplast organization	1.82E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	1.93E-04
19	GO:0060627: regulation of vesicle-mediated transport	1.93E-04
20	GO:0043489: RNA stabilization	1.93E-04
21	GO:0000481: maturation of 5S rRNA	1.93E-04
22	GO:0033481: galacturonate biosynthetic process	1.93E-04
23	GO:0042371: vitamin K biosynthetic process	1.93E-04
24	GO:0034337: RNA folding	1.93E-04
25	GO:0045454: cell redox homeostasis	3.88E-04
26	GO:0010270: photosystem II oxygen evolving complex assembly	4.33E-04
27	GO:0034755: iron ion transmembrane transport	4.33E-04
28	GO:0006568: tryptophan metabolic process	4.33E-04
29	GO:0006869: lipid transport	4.59E-04
30	GO:0010207: photosystem II assembly	5.65E-04
31	GO:0006518: peptide metabolic process	7.06E-04
32	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.06E-04
33	GO:0019048: modulation by virus of host morphology or physiology	1.01E-03
34	GO:0051016: barbed-end actin filament capping	1.01E-03
35	GO:0009650: UV protection	1.01E-03
36	GO:0031048: chromatin silencing by small RNA	1.01E-03
37	GO:0010088: phloem development	1.01E-03
38	GO:2001141: regulation of RNA biosynthetic process	1.01E-03
39	GO:0009765: photosynthesis, light harvesting	1.34E-03
40	GO:0051567: histone H3-K9 methylation	1.34E-03
41	GO:0042991: transcription factor import into nucleus	1.34E-03
42	GO:0006021: inositol biosynthetic process	1.34E-03
43	GO:0042335: cuticle development	1.40E-03
44	GO:0016123: xanthophyll biosynthetic process	1.70E-03
45	GO:0048359: mucilage metabolic process involved in seed coat development	1.70E-03
46	GO:0016120: carotene biosynthetic process	1.70E-03
47	GO:0006564: L-serine biosynthetic process	1.70E-03
48	GO:0045038: protein import into chloroplast thylakoid membrane	1.70E-03
49	GO:0048825: cotyledon development	1.73E-03
50	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.10E-03
51	GO:0000470: maturation of LSU-rRNA	2.10E-03
52	GO:0016554: cytidine to uridine editing	2.10E-03
53	GO:0006828: manganese ion transport	2.10E-03
54	GO:0032973: amino acid export	2.10E-03
55	GO:0016458: gene silencing	2.10E-03
56	GO:0006014: D-ribose metabolic process	2.10E-03
57	GO:0048827: phyllome development	2.10E-03
58	GO:0006694: steroid biosynthetic process	2.52E-03
59	GO:0010019: chloroplast-nucleus signaling pathway	2.52E-03
60	GO:0010555: response to mannitol	2.52E-03
61	GO:0010027: thylakoid membrane organization	2.67E-03
62	GO:0043090: amino acid import	2.96E-03
63	GO:0051693: actin filament capping	2.96E-03
64	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.96E-03
65	GO:0050829: defense response to Gram-negative bacterium	2.96E-03
66	GO:0015995: chlorophyll biosynthetic process	3.14E-03
67	GO:0010928: regulation of auxin mediated signaling pathway	3.43E-03
68	GO:0009642: response to light intensity	3.43E-03
69	GO:0030091: protein repair	3.43E-03
70	GO:0032508: DNA duplex unwinding	3.43E-03
71	GO:0000105: histidine biosynthetic process	3.43E-03
72	GO:0071482: cellular response to light stimulus	3.93E-03
73	GO:0009808: lignin metabolic process	3.93E-03
74	GO:0009631: cold acclimation	4.01E-03
75	GO:0009637: response to blue light	4.40E-03
76	GO:0080144: amino acid homeostasis	4.44E-03
77	GO:0000902: cell morphogenesis	4.44E-03
78	GO:0015780: nucleotide-sugar transport	4.44E-03
79	GO:0034599: cellular response to oxidative stress	4.60E-03
80	GO:0006779: porphyrin-containing compound biosynthetic process	4.99E-03
81	GO:1900865: chloroplast RNA modification	4.99E-03
82	GO:0042742: defense response to bacterium	5.32E-03
83	GO:0006782: protoporphyrinogen IX biosynthetic process	5.55E-03
84	GO:0030422: production of siRNA involved in RNA interference	5.55E-03
85	GO:0009735: response to cytokinin	5.61E-03
86	GO:0010114: response to red light	5.66E-03
87	GO:0006816: calcium ion transport	6.13E-03
88	GO:0009773: photosynthetic electron transport in photosystem I	6.13E-03
89	GO:0043085: positive regulation of catalytic activity	6.13E-03
90	GO:0006415: translational termination	6.13E-03
91	GO:0006879: cellular iron ion homeostasis	6.13E-03
92	GO:0006352: DNA-templated transcription, initiation	6.13E-03
93	GO:0018119: peptidyl-cysteine S-nitrosylation	6.13E-03
94	GO:0006790: sulfur compound metabolic process	6.73E-03
95	GO:0006820: anion transport	6.73E-03
96	GO:0006006: glucose metabolic process	7.36E-03
97	GO:0010229: inflorescence development	7.36E-03
98	GO:0030036: actin cytoskeleton organization	7.36E-03
99	GO:0010143: cutin biosynthetic process	8.01E-03
100	GO:0019253: reductive pentose-phosphate cycle	8.01E-03
101	GO:0007015: actin filament organization	8.01E-03
102	GO:0010540: basipetal auxin transport	8.01E-03
103	GO:0009225: nucleotide-sugar metabolic process	8.67E-03
104	GO:0046854: phosphatidylinositol phosphorylation	8.67E-03
105	GO:0006457: protein folding	9.51E-03
106	GO:0019344: cysteine biosynthetic process	1.01E-02
107	GO:0000027: ribosomal large subunit assembly	1.01E-02
108	GO:0007010: cytoskeleton organization	1.01E-02
109	GO:0006418: tRNA aminoacylation for protein translation	1.08E-02
110	GO:0009768: photosynthesis, light harvesting in photosystem I	1.08E-02
111	GO:0006306: DNA methylation	1.15E-02
112	GO:0030245: cellulose catabolic process	1.23E-02
113	GO:0080092: regulation of pollen tube growth	1.23E-02
114	GO:0009411: response to UV	1.31E-02
115	GO:0019722: calcium-mediated signaling	1.39E-02
116	GO:0016117: carotenoid biosynthetic process	1.47E-02
117	GO:0009790: embryo development	1.59E-02
118	GO:0008360: regulation of cell shape	1.63E-02
119	GO:0009958: positive gravitropism	1.63E-02
120	GO:0006662: glycerol ether metabolic process	1.63E-02
121	GO:0006342: chromatin silencing	1.63E-02
122	GO:0019252: starch biosynthetic process	1.81E-02
123	GO:0055114: oxidation-reduction process	1.88E-02
124	GO:0000302: response to reactive oxygen species	1.90E-02
125	GO:0016132: brassinosteroid biosynthetic process	1.90E-02
126	GO:0007264: small GTPase mediated signal transduction	1.99E-02
127	GO:0007267: cell-cell signaling	2.27E-02
128	GO:0051607: defense response to virus	2.37E-02
129	GO:0009911: positive regulation of flower development	2.47E-02
130	GO:0009416: response to light stimulus	2.55E-02
131	GO:0009816: defense response to bacterium, incompatible interaction	2.57E-02
132	GO:0042128: nitrate assimilation	2.67E-02
133	GO:0009409: response to cold	2.92E-02
134	GO:0009817: defense response to fungus, incompatible interaction	2.98E-02
135	GO:0048481: plant ovule development	2.98E-02
136	GO:0018298: protein-chromophore linkage	2.98E-02
137	GO:0009834: plant-type secondary cell wall biogenesis	3.20E-02
138	GO:0009407: toxin catabolic process	3.20E-02
139	GO:0006811: ion transport	3.20E-02
140	GO:0010218: response to far red light	3.20E-02
141	GO:0045087: innate immune response	3.53E-02
142	GO:0016051: carbohydrate biosynthetic process	3.53E-02
143	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.74E-02
144	GO:0006839: mitochondrial transport	3.87E-02
145	GO:0015979: photosynthesis	4.12E-02
146	GO:0008643: carbohydrate transport	4.47E-02
147	GO:0009636: response to toxic substance	4.59E-02
148	GO:0006855: drug transmembrane transport	4.71E-02
149	GO:0042538: hyperosmotic salinity response	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0004401: histidinol-phosphatase activity	0.00E+00
10	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
11	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
12	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
13	GO:0019843: rRNA binding	4.28E-12
14	GO:0003735: structural constituent of ribosome	8.23E-10
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.45E-07
16	GO:0051920: peroxiredoxin activity	1.05E-06
17	GO:0016209: antioxidant activity	2.63E-06
18	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	9.18E-05
19	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.93E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.93E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.93E-04
22	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.93E-04
23	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.85E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	4.33E-04
25	GO:0052832: inositol monophosphate 3-phosphatase activity	4.33E-04
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.33E-04
27	GO:0008934: inositol monophosphate 1-phosphatase activity	4.33E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	4.33E-04
29	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.33E-04
30	GO:0008266: poly(U) RNA binding	5.65E-04
31	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	7.06E-04
32	GO:0050734: hydroxycinnamoyltransferase activity	7.06E-04
33	GO:0002161: aminoacyl-tRNA editing activity	7.06E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	7.06E-04
35	GO:0030267: glyoxylate reductase (NADP) activity	7.06E-04
36	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.06E-04
37	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	7.06E-04
38	GO:0005528: FK506 binding	7.77E-04
39	GO:0016149: translation release factor activity, codon specific	1.01E-03
40	GO:0035197: siRNA binding	1.01E-03
41	GO:0043023: ribosomal large subunit binding	1.01E-03
42	GO:0008097: 5S rRNA binding	1.01E-03
43	GO:0016987: sigma factor activity	1.34E-03
44	GO:0050378: UDP-glucuronate 4-epimerase activity	1.34E-03
45	GO:0004659: prenyltransferase activity	1.34E-03
46	GO:0001053: plastid sigma factor activity	1.34E-03
47	GO:0005319: lipid transporter activity	1.34E-03
48	GO:0008381: mechanically-gated ion channel activity	1.70E-03
49	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.70E-03
50	GO:0004040: amidase activity	1.70E-03
51	GO:0004130: cytochrome-c peroxidase activity	2.10E-03
52	GO:0016688: L-ascorbate peroxidase activity	2.10E-03
53	GO:0008237: metallopeptidase activity	2.38E-03
54	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.52E-03
55	GO:0015631: tubulin binding	2.52E-03
56	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.52E-03
57	GO:0004747: ribokinase activity	2.52E-03
58	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.52E-03
59	GO:0016831: carboxy-lyase activity	2.96E-03
60	GO:0008312: 7S RNA binding	3.43E-03
61	GO:0004033: aldo-keto reductase (NADP) activity	3.43E-03
62	GO:0008865: fructokinase activity	3.43E-03
63	GO:0004222: metalloendopeptidase activity	3.83E-03
64	GO:0008289: lipid binding	4.44E-03
65	GO:0003747: translation release factor activity	4.44E-03
66	GO:0005381: iron ion transmembrane transporter activity	4.99E-03
67	GO:0005384: manganese ion transmembrane transporter activity	4.99E-03
68	GO:0047617: acyl-CoA hydrolase activity	4.99E-03
69	GO:0008047: enzyme activator activity	5.55E-03
70	GO:0004601: peroxidase activity	5.73E-03
71	GO:0051537: 2 iron, 2 sulfur cluster binding	6.12E-03
72	GO:0004521: endoribonuclease activity	6.73E-03
73	GO:0000049: tRNA binding	6.73E-03
74	GO:0051287: NAD binding	6.85E-03
75	GO:0008081: phosphoric diester hydrolase activity	7.36E-03
76	GO:0015095: magnesium ion transmembrane transporter activity	7.36E-03
77	GO:0031409: pigment binding	9.35E-03
78	GO:0008324: cation transmembrane transporter activity	1.08E-02
79	GO:0004176: ATP-dependent peptidase activity	1.15E-02
80	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.15E-02
81	GO:0008810: cellulase activity	1.31E-02
82	GO:0008514: organic anion transmembrane transporter activity	1.39E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	1.47E-02
84	GO:0047134: protein-disulfide reductase activity	1.47E-02
85	GO:0008080: N-acetyltransferase activity	1.63E-02
86	GO:0030276: clathrin binding	1.63E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	1.72E-02
88	GO:0008017: microtubule binding	1.98E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.08E-02
90	GO:0051015: actin filament binding	2.08E-02
91	GO:0016597: amino acid binding	2.37E-02
92	GO:0016168: chlorophyll binding	2.57E-02
93	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.67E-02
94	GO:0004683: calmodulin-dependent protein kinase activity	2.77E-02
95	GO:0016788: hydrolase activity, acting on ester bonds	2.98E-02
96	GO:0015238: drug transmembrane transporter activity	3.09E-02
97	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.31E-02
98	GO:0003729: mRNA binding	3.35E-02
99	GO:0050661: NADP binding	3.87E-02
100	GO:0004364: glutathione transferase activity	4.11E-02
101	GO:0005516: calmodulin binding	4.23E-02
102	GO:0043621: protein self-association	4.47E-02
103	GO:0004871: signal transducer activity	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0070971: endoplasmic reticulum exit site	0.00E+00
2	GO:0009507: chloroplast	8.87E-31
3	GO:0009570: chloroplast stroma	5.76E-28
4	GO:0009941: chloroplast envelope	2.81E-25
5	GO:0009535: chloroplast thylakoid membrane	1.63E-11
6	GO:0009579: thylakoid	5.36E-11
7	GO:0005840: ribosome	1.39E-10
8	GO:0031977: thylakoid lumen	1.15E-07
9	GO:0009534: chloroplast thylakoid	1.55E-07
10	GO:0009543: chloroplast thylakoid lumen	2.31E-06
11	GO:0000311: plastid large ribosomal subunit	1.60E-05
12	GO:0046658: anchored component of plasma membrane	1.32E-04
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.93E-04
14	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.93E-04
15	GO:0009547: plastid ribosome	1.93E-04
16	GO:0008290: F-actin capping protein complex	4.33E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	4.33E-04
18	GO:0005875: microtubule associated complex	7.02E-04
19	GO:0005719: nuclear euchromatin	1.01E-03
20	GO:0031969: chloroplast membrane	1.49E-03
21	GO:0005886: plasma membrane	2.10E-03
22	GO:0009536: plastid	2.18E-03
23	GO:0048046: apoplast	2.25E-03
24	GO:0030529: intracellular ribonucleoprotein complex	2.67E-03
25	GO:0009533: chloroplast stromal thylakoid	2.96E-03
26	GO:0031225: anchored component of membrane	3.37E-03
27	GO:0016020: membrane	3.46E-03
28	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.93E-03
29	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.44E-03
30	GO:0015030: Cajal body	4.99E-03
31	GO:0016324: apical plasma membrane	5.55E-03
32	GO:0005884: actin filament	6.13E-03
33	GO:0032040: small-subunit processome	6.73E-03
34	GO:0005874: microtubule	7.21E-03
35	GO:0009505: plant-type cell wall	7.89E-03
36	GO:0000312: plastid small ribosomal subunit	8.01E-03
37	GO:0030659: cytoplasmic vesicle membrane	8.01E-03
38	GO:0022625: cytosolic large ribosomal subunit	8.04E-03
39	GO:0030076: light-harvesting complex	8.67E-03
40	GO:0010287: plastoglobule	1.29E-02
41	GO:0030136: clathrin-coated vesicle	1.47E-02
42	GO:0005770: late endosome	1.63E-02
43	GO:0009522: photosystem I	1.72E-02
44	GO:0009523: photosystem II	1.81E-02
45	GO:0019898: extrinsic component of membrane	1.81E-02
46	GO:0032580: Golgi cisterna membrane	2.18E-02
47	GO:0010319: stromule	2.27E-02
48	GO:0022626: cytosolic ribosome	2.42E-02
49	GO:0009707: chloroplast outer membrane	2.98E-02
50	GO:0005819: spindle	3.76E-02