Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G39960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900367: positive regulation of defense response to insect0.00E+00
2GO:0042430: indole-containing compound metabolic process0.00E+00
3GO:0002376: immune system process0.00E+00
4GO:0006793: phosphorus metabolic process0.00E+00
5GO:0071327: cellular response to trehalose stimulus0.00E+00
6GO:0080151: positive regulation of salicylic acid mediated signaling pathway4.79E-07
7GO:0006468: protein phosphorylation3.53E-06
8GO:0009617: response to bacterium1.14E-05
9GO:0071456: cellular response to hypoxia1.40E-05
10GO:0009627: systemic acquired resistance8.15E-05
11GO:0010230: alternative respiration9.50E-05
12GO:1901183: positive regulation of camalexin biosynthetic process9.50E-05
13GO:0044419: interspecies interaction between organisms2.24E-04
14GO:0031349: positive regulation of defense response2.24E-04
15GO:0080026: response to indolebutyric acid2.24E-04
16GO:0019483: beta-alanine biosynthetic process2.24E-04
17GO:0051592: response to calcium ion2.24E-04
18GO:0010618: aerenchyma formation2.24E-04
19GO:0006212: uracil catabolic process2.24E-04
20GO:0010200: response to chitin3.53E-04
21GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway3.73E-04
22GO:0034051: negative regulation of plant-type hypersensitive response3.73E-04
23GO:0010351: lithium ion transport3.73E-04
24GO:0009626: plant-type hypersensitive response4.18E-04
25GO:0080024: indolebutyric acid metabolic process5.37E-04
26GO:0006882: cellular zinc ion homeostasis5.37E-04
27GO:0019438: aromatic compound biosynthetic process5.37E-04
28GO:0048194: Golgi vesicle budding5.37E-04
29GO:0080142: regulation of salicylic acid biosynthetic process7.14E-04
30GO:0034052: positive regulation of plant-type hypersensitive response9.02E-04
31GO:0045487: gibberellin catabolic process9.02E-04
32GO:0010225: response to UV-C9.02E-04
33GO:0042742: defense response to bacterium9.45E-04
34GO:0009816: defense response to bacterium, incompatible interaction1.09E-03
35GO:0002238: response to molecule of fungal origin1.10E-03
36GO:0010942: positive regulation of cell death1.10E-03
37GO:0010555: response to mannitol1.31E-03
38GO:0010310: regulation of hydrogen peroxide metabolic process1.31E-03
39GO:2000067: regulation of root morphogenesis1.31E-03
40GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.31E-03
41GO:0030026: cellular manganese ion homeostasis1.54E-03
42GO:0043090: amino acid import1.54E-03
43GO:0009787: regulation of abscisic acid-activated signaling pathway1.78E-03
44GO:0043068: positive regulation of programmed cell death1.78E-03
45GO:0007186: G-protein coupled receptor signaling pathway2.03E-03
46GO:0010262: somatic embryogenesis2.03E-03
47GO:0030968: endoplasmic reticulum unfolded protein response2.03E-03
48GO:0043562: cellular response to nitrogen levels2.03E-03
49GO:2000031: regulation of salicylic acid mediated signaling pathway2.03E-03
50GO:0022900: electron transport chain2.03E-03
51GO:0042542: response to hydrogen peroxide2.07E-03
52GO:0051707: response to other organism2.16E-03
53GO:0051865: protein autoubiquitination2.29E-03
54GO:0010112: regulation of systemic acquired resistance2.29E-03
55GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.56E-03
56GO:1900426: positive regulation of defense response to bacterium2.56E-03
57GO:0031347: regulation of defense response2.60E-03
58GO:0055062: phosphate ion homeostasis2.85E-03
59GO:0007064: mitotic sister chromatid cohesion2.85E-03
60GO:0006032: chitin catabolic process2.85E-03
61GO:0009688: abscisic acid biosynthetic process2.85E-03
62GO:0010162: seed dormancy process2.85E-03
63GO:0000272: polysaccharide catabolic process3.14E-03
64GO:0009750: response to fructose3.14E-03
65GO:0002213: defense response to insect3.44E-03
66GO:0010105: negative regulation of ethylene-activated signaling pathway3.44E-03
67GO:0006790: sulfur compound metabolic process3.44E-03
68GO:0012501: programmed cell death3.44E-03
69GO:0009751: response to salicylic acid3.50E-03
70GO:0009737: response to abscisic acid3.54E-03
71GO:0006807: nitrogen compound metabolic process3.76E-03
72GO:0002237: response to molecule of bacterial origin4.08E-03
73GO:0070588: calcium ion transmembrane transport4.41E-03
74GO:0046854: phosphatidylinositol phosphorylation4.41E-03
75GO:0006874: cellular calcium ion homeostasis5.46E-03
76GO:0016998: cell wall macromolecule catabolic process5.83E-03
77GO:0006952: defense response6.02E-03
78GO:2000022: regulation of jasmonic acid mediated signaling pathway6.20E-03
79GO:0031348: negative regulation of defense response6.20E-03
80GO:0009686: gibberellin biosynthetic process6.58E-03
81GO:0009625: response to insect6.58E-03
82GO:0006508: proteolysis6.71E-03
83GO:0010091: trichome branching6.98E-03
84GO:0042391: regulation of membrane potential7.79E-03
85GO:0006814: sodium ion transport8.63E-03
86GO:0010183: pollen tube guidance9.06E-03
87GO:0009749: response to glucose9.06E-03
88GO:0010193: response to ozone9.51E-03
89GO:0000302: response to reactive oxygen species9.51E-03
90GO:0030163: protein catabolic process1.04E-02
91GO:0009639: response to red or far red light1.09E-02
92GO:0001666: response to hypoxia1.23E-02
93GO:0016311: dephosphorylation1.43E-02
94GO:0048767: root hair elongation1.54E-02
95GO:0006499: N-terminal protein myristoylation1.59E-02
96GO:0045454: cell redox homeostasis1.63E-02
97GO:0048527: lateral root development1.65E-02
98GO:0010043: response to zinc ion1.65E-02
99GO:0006865: amino acid transport1.70E-02
100GO:0006979: response to oxidative stress1.82E-02
101GO:0006631: fatty acid metabolic process1.99E-02
102GO:0006629: lipid metabolic process2.01E-02
103GO:0010114: response to red light2.10E-02
104GO:0009744: response to sucrose2.10E-02
105GO:0050832: defense response to fungus2.17E-02
106GO:0006812: cation transport2.47E-02
107GO:0009846: pollen germination2.47E-02
108GO:0009409: response to cold2.64E-02
109GO:0010224: response to UV-B2.67E-02
110GO:0009624: response to nematode3.34E-02
111GO:0009845: seed germination4.15E-02
112GO:0040008: regulation of growth4.77E-02
113GO:0010150: leaf senescence4.93E-02
RankGO TermAdjusted P value
1GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
2GO:0003837: beta-ureidopropionase activity0.00E+00
3GO:0004674: protein serine/threonine kinase activity3.55E-07
4GO:0004190: aspartic-type endopeptidase activity5.90E-06
5GO:0004338: glucan exo-1,3-beta-glucosidase activity2.24E-04
6GO:0045543: gibberellin 2-beta-dioxygenase activity2.24E-04
7GO:0016301: kinase activity3.65E-04
8GO:0031683: G-protein beta/gamma-subunit complex binding3.73E-04
9GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity3.73E-04
10GO:0001664: G-protein coupled receptor binding3.73E-04
11GO:0035529: NADH pyrophosphatase activity5.37E-04
12GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity5.37E-04
13GO:0015368: calcium:cation antiporter activity7.14E-04
14GO:0015369: calcium:proton antiporter activity7.14E-04
15GO:0005524: ATP binding7.89E-04
16GO:0047631: ADP-ribose diphosphatase activity9.02E-04
17GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity9.02E-04
18GO:0000210: NAD+ diphosphatase activity1.10E-03
19GO:0030247: polysaccharide binding1.21E-03
20GO:0004012: phospholipid-translocating ATPase activity1.31E-03
21GO:0051920: peroxiredoxin activity1.31E-03
22GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.31E-03
23GO:0015491: cation:cation antiporter activity1.78E-03
24GO:0016209: antioxidant activity1.78E-03
25GO:0004568: chitinase activity2.85E-03
26GO:0008171: O-methyltransferase activity2.85E-03
27GO:0016298: lipase activity2.99E-03
28GO:0005509: calcium ion binding3.72E-03
29GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.76E-03
30GO:0005262: calcium channel activity3.76E-03
31GO:0005388: calcium-transporting ATPase activity3.76E-03
32GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.08E-03
33GO:0008061: chitin binding4.41E-03
34GO:0030552: cAMP binding4.41E-03
35GO:0030553: cGMP binding4.41E-03
36GO:0005216: ion channel activity5.46E-03
37GO:0004298: threonine-type endopeptidase activity5.83E-03
38GO:0008810: cellulase activity6.58E-03
39GO:0004499: N,N-dimethylaniline monooxygenase activity6.98E-03
40GO:0005249: voltage-gated potassium channel activity7.79E-03
41GO:0030551: cyclic nucleotide binding7.79E-03
42GO:0005516: calmodulin binding1.24E-02
43GO:0050660: flavin adenine dinucleotide binding1.27E-02
44GO:0004497: monooxygenase activity1.36E-02
45GO:0004806: triglyceride lipase activity1.38E-02
46GO:0004683: calmodulin-dependent protein kinase activity1.38E-02
47GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.43E-02
48GO:0043565: sequence-specific DNA binding1.62E-02
49GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.65E-02
50GO:0000987: core promoter proximal region sequence-specific DNA binding1.81E-02
51GO:0050661: NADP binding1.93E-02
52GO:0046872: metal ion binding2.02E-02
53GO:0005515: protein binding2.08E-02
54GO:0015293: symporter activity2.29E-02
55GO:0051287: NAD binding2.41E-02
56GO:0015171: amino acid transmembrane transporter activity2.80E-02
57GO:0008234: cysteine-type peptidase activity2.80E-02
58GO:0004672: protein kinase activity2.92E-02
59GO:0004252: serine-type endopeptidase activity4.23E-02
60GO:0008565: protein transporter activity4.46E-02
61GO:0016787: hydrolase activity4.65E-02
62GO:0030246: carbohydrate binding4.77E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane6.56E-04
2GO:0030660: Golgi-associated vesicle membrane7.14E-04
3GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane7.14E-04
4GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane1.78E-03
5GO:0019773: proteasome core complex, alpha-subunit complex2.03E-03
6GO:0005765: lysosomal membrane3.14E-03
7GO:0016021: integral component of membrane4.75E-03
8GO:0005839: proteasome core complex5.83E-03
9GO:0090406: pollen tube2.10E-02
10GO:0031966: mitochondrial membrane2.47E-02
11GO:0005576: extracellular region2.53E-02
12GO:0000502: proteasome complex2.60E-02
13GO:0005887: integral component of plasma membrane2.73E-02
14GO:0005783: endoplasmic reticulum2.75E-02
15GO:0048046: apoplast2.93E-02
16GO:0005747: mitochondrial respiratory chain complex I3.00E-02
17GO:0005834: heterotrimeric G-protein complex3.07E-02
18GO:0005618: cell wall3.32E-02
19GO:0009706: chloroplast inner membrane3.34E-02
20GO:0005623: cell4.00E-02
21GO:0009705: plant-type vacuole membrane4.93E-02
Gene type



Gene DE type