co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010378: temperature compensation of the circadian clock	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0070584: mitochondrion morphogenesis	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:0009768: photosynthesis, light harvesting in photosystem I	9.95E-23
9	GO:0015979: photosynthesis	6.20E-17
10	GO:0018298: protein-chromophore linkage	1.47E-14
11	GO:0009645: response to low light intensity stimulus	3.00E-09
12	GO:0010218: response to far red light	7.08E-09
13	GO:0009637: response to blue light	4.84E-07
14	GO:0009769: photosynthesis, light harvesting in photosystem II	6.36E-07
15	GO:0010114: response to red light	9.63E-07
16	GO:0009644: response to high light intensity	1.19E-06
17	GO:0009416: response to light stimulus	1.18E-05
18	GO:0010196: nonphotochemical quenching	6.54E-05
19	GO:0080167: response to karrikin	8.95E-05
20	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	1.30E-04
21	GO:0015812: gamma-aminobutyric acid transport	1.30E-04
22	GO:0032958: inositol phosphate biosynthetic process	1.30E-04
23	GO:0006475: internal protein amino acid acetylation	1.30E-04
24	GO:0006474: N-terminal protein amino acid acetylation	1.30E-04
25	GO:0017198: N-terminal peptidyl-serine acetylation	1.30E-04
26	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.30E-04
27	GO:0015995: chlorophyll biosynthetic process	1.61E-04
28	GO:0009409: response to cold	2.04E-04
29	GO:0007623: circadian rhythm	2.30E-04
30	GO:0051170: nuclear import	2.99E-04
31	GO:0051262: protein tetramerization	2.99E-04
32	GO:0008643: carbohydrate transport	4.01E-04
33	GO:0006598: polyamine catabolic process	4.92E-04
34	GO:1902448: positive regulation of shade avoidance	4.92E-04
35	GO:0048511: rhythmic process	5.50E-04
36	GO:0010017: red or far-red light signaling pathway	6.01E-04
37	GO:0031936: negative regulation of chromatin silencing	7.04E-04
38	GO:0050482: arachidonic acid secretion	7.04E-04
39	GO:0006020: inositol metabolic process	7.04E-04
40	GO:0044211: CTP salvage	7.04E-04
41	GO:0010600: regulation of auxin biosynthetic process	9.34E-04
42	GO:0044206: UMP salvage	9.34E-04
43	GO:0030104: water homeostasis	9.34E-04
44	GO:0009765: photosynthesis, light harvesting	9.34E-04
45	GO:2000306: positive regulation of photomorphogenesis	9.34E-04
46	GO:0043097: pyrimidine nucleoside salvage	1.18E-03
47	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.18E-03
48	GO:1901657: glycosyl compound metabolic process	1.23E-03
49	GO:0045962: positive regulation of development, heterochronic	1.45E-03
50	GO:0006206: pyrimidine nucleobase metabolic process	1.45E-03
51	GO:0009635: response to herbicide	1.45E-03
52	GO:0016126: sterol biosynthetic process	1.55E-03
53	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.73E-03
54	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.73E-03
55	GO:0071470: cellular response to osmotic stress	1.73E-03
56	GO:0080111: DNA demethylation	2.04E-03
57	GO:0010161: red light signaling pathway	2.04E-03
58	GO:0000160: phosphorelay signal transduction system	2.11E-03
59	GO:0009704: de-etiolation	2.36E-03
60	GO:0006644: phospholipid metabolic process	2.36E-03
61	GO:0010928: regulation of auxin mediated signaling pathway	2.36E-03
62	GO:0007186: G-protein coupled receptor signaling pathway	2.69E-03
63	GO:0010099: regulation of photomorphogenesis	2.69E-03
64	GO:0090333: regulation of stomatal closure	3.04E-03
65	GO:0042542: response to hydrogen peroxide	3.13E-03
66	GO:0009640: photomorphogenesis	3.26E-03
67	GO:0030042: actin filament depolymerization	3.41E-03
68	GO:0055062: phosphate ion homeostasis	3.79E-03
69	GO:0009641: shade avoidance	3.79E-03
70	GO:0010162: seed dormancy process	3.79E-03
71	GO:0006812: cation transport	4.08E-03
72	GO:0018119: peptidyl-cysteine S-nitrosylation	4.18E-03
73	GO:0030148: sphingolipid biosynthetic process	4.18E-03
74	GO:0006355: regulation of transcription, DNA-templated	4.37E-03
75	GO:0009585: red, far-red light phototransduction	4.38E-03
76	GO:0006351: transcription, DNA-templated	4.62E-03
77	GO:0009718: anthocyanin-containing compound biosynthetic process	5.00E-03
78	GO:0009767: photosynthetic electron transport chain	5.00E-03
79	GO:0010207: photosystem II assembly	5.44E-03
80	GO:0007015: actin filament organization	5.44E-03
81	GO:0009266: response to temperature stimulus	5.44E-03
82	GO:0090351: seedling development	5.88E-03
83	GO:0006874: cellular calcium ion homeostasis	7.30E-03
84	GO:0003333: amino acid transmembrane transport	7.79E-03
85	GO:0009269: response to desiccation	7.79E-03
86	GO:0071215: cellular response to abscisic acid stimulus	8.82E-03
87	GO:0045492: xylan biosynthetic process	9.35E-03
88	GO:0070417: cellular response to cold	9.90E-03
89	GO:0009908: flower development	1.11E-02
90	GO:0009735: response to cytokinin	1.12E-02
91	GO:0006814: sodium ion transport	1.16E-02
92	GO:0042752: regulation of circadian rhythm	1.16E-02
93	GO:0000302: response to reactive oxygen species	1.28E-02
94	GO:0016579: protein deubiquitination	1.59E-02
95	GO:0009658: chloroplast organization	1.67E-02
96	GO:0055085: transmembrane transport	1.70E-02
97	GO:0055114: oxidation-reduction process	1.73E-02
98	GO:0006888: ER to Golgi vesicle-mediated transport	1.86E-02
99	GO:0048573: photoperiodism, flowering	1.86E-02
100	GO:0009723: response to ethylene	1.93E-02
101	GO:0009817: defense response to fungus, incompatible interaction	2.00E-02
102	GO:0048481: plant ovule development	2.00E-02
103	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.14E-02
104	GO:0006811: ion transport	2.15E-02
105	GO:0009631: cold acclimation	2.22E-02
106	GO:0010119: regulation of stomatal movement	2.22E-02
107	GO:0007568: aging	2.22E-02
108	GO:0044550: secondary metabolite biosynthetic process	2.25E-02
109	GO:0016051: carbohydrate biosynthetic process	2.37E-02
110	GO:0034599: cellular response to oxidative stress	2.45E-02
111	GO:0009737: response to abscisic acid	2.49E-02
112	GO:0045892: negative regulation of transcription, DNA-templated	2.52E-02
113	GO:0006886: intracellular protein transport	2.56E-02
114	GO:0051707: response to other organism	2.84E-02
115	GO:0032259: methylation	2.93E-02
116	GO:0006629: lipid metabolic process	3.06E-02
117	GO:0009965: leaf morphogenesis	3.08E-02
118	GO:0042538: hyperosmotic salinity response	3.34E-02
119	GO:0009909: regulation of flower development	3.77E-02
120	GO:0043086: negative regulation of catalytic activity	3.95E-02
121	GO:0009624: response to nematode	4.51E-02
122	GO:0009651: response to salt stress	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0080082: esculin beta-glucosidase activity	0.00E+00
3	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
4	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
5	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
6	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
7	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
8	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
9	GO:0090711: FMN hydrolase activity	0.00E+00
10	GO:0031409: pigment binding	7.78E-21
11	GO:0016168: chlorophyll binding	4.74E-17
12	GO:0000828: inositol hexakisphosphate kinase activity	1.30E-04
13	GO:1990190: peptide-glutamate-N-acetyltransferase activity	1.30E-04
14	GO:0052631: sphingolipid delta-8 desaturase activity	1.30E-04
15	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.30E-04
16	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.30E-04
17	GO:0000829: inositol heptakisphosphate kinase activity	1.30E-04
18	GO:0005227: calcium activated cation channel activity	1.30E-04
19	GO:0080079: cellobiose glucosidase activity	1.30E-04
20	GO:1990189: peptide-serine-N-acetyltransferase activity	1.30E-04
21	GO:0016630: protochlorophyllide reductase activity	2.99E-04
22	GO:0015180: L-alanine transmembrane transporter activity	2.99E-04
23	GO:0046592: polyamine oxidase activity	4.92E-04
24	GO:0015181: arginine transmembrane transporter activity	7.04E-04
25	GO:0015189: L-lysine transmembrane transporter activity	7.04E-04
26	GO:0000254: C-4 methylsterol oxidase activity	7.04E-04
27	GO:0005313: L-glutamate transmembrane transporter activity	9.34E-04
28	GO:0004506: squalene monooxygenase activity	9.34E-04
29	GO:0004930: G-protein coupled receptor activity	9.34E-04
30	GO:0004845: uracil phosphoribosyltransferase activity	9.34E-04
31	GO:0046872: metal ion binding	1.08E-03
32	GO:0004623: phospholipase A2 activity	1.18E-03
33	GO:0000156: phosphorelay response regulator activity	1.23E-03
34	GO:0015562: efflux transmembrane transporter activity	1.45E-03
35	GO:0005515: protein binding	1.47E-03
36	GO:0015297: antiporter activity	1.53E-03
37	GO:0005261: cation channel activity	1.73E-03
38	GO:0004849: uridine kinase activity	1.73E-03
39	GO:0102483: scopolin beta-glucosidase activity	1.81E-03
40	GO:0008422: beta-glucosidase activity	2.76E-03
41	GO:0000989: transcription factor activity, transcription factor binding	3.04E-03
42	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.04E-03
43	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.79E-03
44	GO:0047372: acylglycerol lipase activity	4.18E-03
45	GO:0004022: alcohol dehydrogenase (NAD) activity	5.00E-03
46	GO:0005315: inorganic phosphate transmembrane transporter activity	5.00E-03
47	GO:0008131: primary amine oxidase activity	5.44E-03
48	GO:0005217: intracellular ligand-gated ion channel activity	5.88E-03
49	GO:0003712: transcription cofactor activity	5.88E-03
50	GO:0004970: ionotropic glutamate receptor activity	5.88E-03
51	GO:0005216: ion channel activity	7.30E-03
52	GO:0008324: cation transmembrane transporter activity	7.30E-03
53	GO:0016787: hydrolase activity	7.52E-03
54	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	7.79E-03
55	GO:0004707: MAP kinase activity	7.79E-03
56	GO:0005506: iron ion binding	7.81E-03
57	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.00E-03
58	GO:0008514: organic anion transmembrane transporter activity	9.35E-03
59	GO:0005351: sugar:proton symporter activity	1.05E-02
60	GO:0008080: N-acetyltransferase activity	1.10E-02
61	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.28E-02
62	GO:0003677: DNA binding	1.46E-02
63	GO:0008168: methyltransferase activity	1.61E-02
64	GO:0008375: acetylglucosaminyltransferase activity	1.79E-02
65	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.87E-02
66	GO:0004497: monooxygenase activity	2.07E-02
67	GO:0042393: histone binding	2.60E-02
68	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.68E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	3.00E-02
70	GO:0043621: protein self-association	3.00E-02
71	GO:0005198: structural molecule activity	3.08E-02
72	GO:0015293: symporter activity	3.08E-02
73	GO:0015171: amino acid transmembrane transporter activity	3.77E-02
74	GO:0022857: transmembrane transporter activity	4.32E-02
75	GO:0003779: actin binding	4.41E-02
76	GO:0016746: transferase activity, transferring acyl groups	4.60E-02
77	GO:0015035: protein disulfide oxidoreductase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	1.80E-18
3	GO:0009534: chloroplast thylakoid	1.11E-16
4	GO:0030076: light-harvesting complex	3.17E-16
5	GO:0009579: thylakoid	2.72E-15
6	GO:0010287: plastoglobule	3.62E-15
7	GO:0009535: chloroplast thylakoid membrane	1.08E-14
8	GO:0009941: chloroplast envelope	3.99E-13
9	GO:0009523: photosystem II	3.48E-08
10	GO:0016021: integral component of membrane	5.74E-08
11	GO:0016020: membrane	1.29E-05
12	GO:0009517: PSII associated light-harvesting complex II	1.40E-05
13	GO:0042651: thylakoid membrane	2.04E-05
14	GO:0009507: chloroplast	3.06E-05
15	GO:0009538: photosystem I reaction center	8.48E-05
16	GO:0031415: NatA complex	2.99E-04
17	GO:0030127: COPII vesicle coat	1.45E-03
18	GO:0009533: chloroplast stromal thylakoid	2.04E-03
19	GO:0010494: cytoplasmic stress granule	3.04E-03
20	GO:0031966: mitochondrial membrane	4.08E-03
21	GO:0030095: chloroplast photosystem II	5.44E-03
22	GO:0009654: photosystem II oxygen evolving complex	7.30E-03
23	GO:0031410: cytoplasmic vesicle	8.30E-03
24	GO:0015629: actin cytoskeleton	8.82E-03
25	GO:0019898: extrinsic component of membrane	1.22E-02
26	GO:0000932: P-body	1.66E-02
27	GO:0009707: chloroplast outer membrane	2.00E-02
28	GO:0005783: endoplasmic reticulum	2.14E-02
29	GO:0031977: thylakoid lumen	2.68E-02
30	GO:0016607: nuclear speck	4.04E-02
31	GO:0009706: chloroplast inner membrane	4.51E-02