co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0015995: chlorophyll biosynthetic process	8.09E-06
6	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.42E-05
7	GO:1901259: chloroplast rRNA processing	5.10E-05
8	GO:0009828: plant-type cell wall loosening	1.05E-04
9	GO:0032544: plastid translation	1.12E-04
10	GO:0015979: photosynthesis	1.29E-04
11	GO:0042371: vitamin K biosynthetic process	1.33E-04
12	GO:0010028: xanthophyll cycle	1.33E-04
13	GO:0034337: RNA folding	1.33E-04
14	GO:0010027: thylakoid membrane organization	1.36E-04
15	GO:0010206: photosystem II repair	1.37E-04
16	GO:0010541: acropetal auxin transport	3.07E-04
17	GO:0001736: establishment of planar polarity	3.07E-04
18	GO:0016122: xanthophyll metabolic process	3.07E-04
19	GO:0006898: receptor-mediated endocytosis	3.07E-04
20	GO:0009926: auxin polar transport	3.83E-04
21	GO:0090391: granum assembly	5.06E-04
22	GO:0016045: detection of bacterium	5.06E-04
23	GO:0010359: regulation of anion channel activity	5.06E-04
24	GO:0010160: formation of animal organ boundary	5.06E-04
25	GO:0009664: plant-type cell wall organization	5.12E-04
26	GO:0009735: response to cytokinin	5.32E-04
27	GO:0009650: UV protection	7.24E-04
28	GO:1901332: negative regulation of lateral root development	7.24E-04
29	GO:0010371: regulation of gibberellin biosynthetic process	7.24E-04
30	GO:0051513: regulation of monopolar cell growth	7.24E-04
31	GO:0010239: chloroplast mRNA processing	7.24E-04
32	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.24E-04
33	GO:0042335: cuticle development	8.59E-04
34	GO:0009958: positive gravitropism	9.22E-04
35	GO:0015994: chlorophyll metabolic process	9.59E-04
36	GO:0045487: gibberellin catabolic process	1.21E-03
37	GO:0010236: plastoquinone biosynthetic process	1.21E-03
38	GO:0009913: epidermal cell differentiation	1.49E-03
39	GO:0060918: auxin transport	1.49E-03
40	GO:0006751: glutathione catabolic process	1.49E-03
41	GO:0042372: phylloquinone biosynthetic process	1.78E-03
42	GO:0017148: negative regulation of translation	1.78E-03
43	GO:0009942: longitudinal axis specification	1.78E-03
44	GO:0009627: systemic acquired resistance	1.80E-03
45	GO:0009734: auxin-activated signaling pathway	2.06E-03
46	GO:0009772: photosynthetic electron transport in photosystem II	2.09E-03
47	GO:0010196: nonphotochemical quenching	2.09E-03
48	GO:0010311: lateral root formation	2.20E-03
49	GO:0006353: DNA-templated transcription, termination	2.42E-03
50	GO:0006605: protein targeting	2.42E-03
51	GO:0007389: pattern specification process	2.77E-03
52	GO:0009826: unidimensional cell growth	2.84E-03
53	GO:0030001: metal ion transport	3.00E-03
54	GO:0006783: heme biosynthetic process	3.13E-03
55	GO:0009245: lipid A biosynthetic process	3.13E-03
56	GO:0009638: phototropism	3.50E-03
57	GO:0006535: cysteine biosynthetic process from serine	3.89E-03
58	GO:0048829: root cap development	3.89E-03
59	GO:0006949: syncytium formation	3.89E-03
60	GO:0006782: protoporphyrinogen IX biosynthetic process	3.89E-03
61	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.08E-03
62	GO:0048765: root hair cell differentiation	4.30E-03
63	GO:0010015: root morphogenesis	4.30E-03
64	GO:0052544: defense response by callose deposition in cell wall	4.30E-03
65	GO:0008361: regulation of cell size	4.72E-03
66	GO:0016024: CDP-diacylglycerol biosynthetic process	4.72E-03
67	GO:0030048: actin filament-based movement	5.15E-03
68	GO:0009785: blue light signaling pathway	5.15E-03
69	GO:0010540: basipetal auxin transport	5.60E-03
70	GO:0010143: cutin biosynthetic process	5.60E-03
71	GO:0009624: response to nematode	6.48E-03
72	GO:0006833: water transport	6.53E-03
73	GO:0019344: cysteine biosynthetic process	7.01E-03
74	GO:0003333: amino acid transmembrane transport	8.02E-03
75	GO:0009411: response to UV	9.08E-03
76	GO:0009306: protein secretion	9.63E-03
77	GO:0048443: stamen development	9.63E-03
78	GO:0080022: primary root development	1.08E-02
79	GO:0034220: ion transmembrane transport	1.08E-02
80	GO:0045490: pectin catabolic process	1.12E-02
81	GO:0048825: cotyledon development	1.25E-02
82	GO:0009739: response to gibberellin	1.26E-02
83	GO:0000302: response to reactive oxygen species	1.32E-02
84	GO:0010583: response to cyclopentenone	1.38E-02
85	GO:0016032: viral process	1.38E-02
86	GO:0030163: protein catabolic process	1.44E-02
87	GO:0006508: proteolysis	1.51E-02
88	GO:0009639: response to red or far red light	1.51E-02
89	GO:0009567: double fertilization forming a zygote and endosperm	1.51E-02
90	GO:0010252: auxin homeostasis	1.51E-02
91	GO:0009658: chloroplast organization	1.74E-02
92	GO:0055085: transmembrane transport	1.80E-02
93	GO:0010218: response to far red light	2.21E-02
94	GO:0048527: lateral root development	2.29E-02
95	GO:0007568: aging	2.29E-02
96	GO:0006865: amino acid transport	2.36E-02
97	GO:0016051: carbohydrate biosynthetic process	2.44E-02
98	GO:0009637: response to blue light	2.44E-02
99	GO:0034599: cellular response to oxidative stress	2.52E-02
100	GO:0045454: cell redox homeostasis	2.59E-02
101	GO:0045892: negative regulation of transcription, DNA-templated	2.63E-02
102	GO:0006631: fatty acid metabolic process	2.76E-02
103	GO:0009640: photomorphogenesis	2.92E-02
104	GO:0010114: response to red light	2.92E-02
105	GO:0016042: lipid catabolic process	3.10E-02
106	GO:0006855: drug transmembrane transport	3.26E-02
107	GO:0048364: root development	3.33E-02
108	GO:0008152: metabolic process	3.52E-02
109	GO:0006364: rRNA processing	3.62E-02
110	GO:0051603: proteolysis involved in cellular protein catabolic process	3.71E-02
111	GO:0009733: response to auxin	3.72E-02
112	GO:0009740: gibberellic acid mediated signaling pathway	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0016851: magnesium chelatase activity	1.78E-08
6	GO:0019843: rRNA binding	1.04E-05
7	GO:0004853: uroporphyrinogen decarboxylase activity	1.33E-04
8	GO:0010329: auxin efflux transmembrane transporter activity	3.02E-04
9	GO:0003839: gamma-glutamylcyclotransferase activity	3.07E-04
10	GO:0005528: FK506 binding	4.74E-04
11	GO:0090729: toxin activity	5.06E-04
12	GO:0030570: pectate lyase activity	6.80E-04
13	GO:0043023: ribosomal large subunit binding	7.24E-04
14	GO:0004659: prenyltransferase activity	9.59E-04
15	GO:0010011: auxin binding	9.59E-04
16	GO:0010328: auxin influx transmembrane transporter activity	9.59E-04
17	GO:0031177: phosphopantetheine binding	1.49E-03
18	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.49E-03
19	GO:0004130: cytochrome-c peroxidase activity	1.49E-03
20	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.49E-03
21	GO:0000035: acyl binding	1.78E-03
22	GO:0004124: cysteine synthase activity	1.78E-03
23	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.42E-03
24	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.42E-03
25	GO:0016788: hydrolase activity, acting on ester bonds	3.05E-03
26	GO:0009672: auxin:proton symporter activity	3.50E-03
27	GO:0015020: glucuronosyltransferase activity	3.89E-03
28	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.95E-03
29	GO:0008794: arsenate reductase (glutaredoxin) activity	4.30E-03
30	GO:0031072: heat shock protein binding	5.15E-03
31	GO:0003774: motor activity	5.60E-03
32	GO:0016829: lyase activity	8.79E-03
33	GO:0003756: protein disulfide isomerase activity	9.63E-03
34	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.05E-02
35	GO:0003723: RNA binding	1.09E-02
36	GO:0008080: N-acetyltransferase activity	1.13E-02
37	GO:0004518: nuclease activity	1.38E-02
38	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.43E-02
39	GO:0016791: phosphatase activity	1.51E-02
40	GO:0015250: water channel activity	1.71E-02
41	GO:0008375: acetylglucosaminyltransferase activity	1.85E-02
42	GO:0008236: serine-type peptidase activity	1.99E-02
43	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.06E-02
44	GO:0052689: carboxylic ester hydrolase activity	2.39E-02
45	GO:0004185: serine-type carboxypeptidase activity	2.92E-02
46	GO:0051537: 2 iron, 2 sulfur cluster binding	3.09E-02
47	GO:0043621: protein self-association	3.09E-02
48	GO:0015293: symporter activity	3.18E-02
49	GO:0003777: microtubule motor activity	3.89E-02
50	GO:0015171: amino acid transmembrane transporter activity	3.89E-02
51	GO:0004650: polygalacturonase activity	4.36E-02
52	GO:0008289: lipid binding	4.42E-02
53	GO:0051082: unfolded protein binding	4.65E-02
54	GO:0005515: protein binding	4.67E-02
55	GO:0015035: protein disulfide oxidoreductase activity	4.74E-02
56	GO:0016746: transferase activity, transferring acyl groups	4.74E-02
57	GO:0008026: ATP-dependent helicase activity	4.84E-02
58	GO:0016887: ATPase activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009570: chloroplast stroma	9.28E-13
3	GO:0009507: chloroplast	2.20E-10
4	GO:0009543: chloroplast thylakoid lumen	5.10E-10
5	GO:0009534: chloroplast thylakoid	7.79E-10
6	GO:0010007: magnesium chelatase complex	3.64E-09
7	GO:0009535: chloroplast thylakoid membrane	6.73E-09
8	GO:0031977: thylakoid lumen	2.25E-08
9	GO:0009941: chloroplast envelope	5.97E-08
10	GO:0009579: thylakoid	2.32E-06
11	GO:0009515: granal stacked thylakoid	1.33E-04
12	GO:0030095: chloroplast photosystem II	3.42E-04
13	GO:0009509: chromoplast	5.06E-04
14	GO:0005618: cell wall	7.88E-04
15	GO:0005576: extracellular region	1.47E-03
16	GO:0009986: cell surface	2.09E-03
17	GO:0009533: chloroplast stromal thylakoid	2.09E-03
18	GO:0042644: chloroplast nucleoid	3.13E-03
19	GO:0016459: myosin complex	3.89E-03
20	GO:0032040: small-subunit processome	4.72E-03
21	GO:0009508: plastid chromosome	5.15E-03
22	GO:0009654: photosystem II oxygen evolving complex	7.51E-03
23	GO:0005840: ribosome	9.16E-03
24	GO:0009523: photosystem II	1.25E-02
25	GO:0019898: extrinsic component of membrane	1.25E-02
26	GO:0009295: nucleoid	1.57E-02
27	GO:0016020: membrane	1.99E-02
28	GO:0005768: endosome	2.83E-02
29	GO:0009536: plastid	4.15E-02
30	GO:0010008: endosome membrane	4.17E-02
31	GO:0009505: plant-type cell wall	4.26E-02
32	GO:0009706: chloroplast inner membrane	4.65E-02