co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0009773: photosynthetic electron transport in photosystem I	9.29E-08
3	GO:0090391: granum assembly	4.55E-06
4	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.94E-05
5	GO:0042335: cuticle development	7.21E-05
6	GO:0009958: positive gravitropism	8.10E-05
7	GO:0010196: nonphotochemical quenching	8.96E-05
8	GO:0009734: auxin-activated signaling pathway	1.13E-04
9	GO:0009828: plant-type cell wall loosening	1.47E-04
10	GO:0071588: hydrogen peroxide mediated signaling pathway	1.58E-04
11	GO:0080051: cutin transport	1.58E-04
12	GO:0006106: fumarate metabolic process	1.58E-04
13	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.71E-04
14	GO:0015979: photosynthesis	2.08E-04
15	GO:0015995: chlorophyll biosynthetic process	2.37E-04
16	GO:0009733: response to auxin	2.58E-04
17	GO:0016042: lipid catabolic process	3.23E-04
18	GO:0015908: fatty acid transport	3.60E-04
19	GO:0006898: receptor-mediated endocytosis	3.60E-04
20	GO:0043255: regulation of carbohydrate biosynthetic process	3.60E-04
21	GO:0010541: acropetal auxin transport	3.60E-04
22	GO:0001736: establishment of planar polarity	3.60E-04
23	GO:0010167: response to nitrate	4.83E-04
24	GO:0009926: auxin polar transport	5.17E-04
25	GO:0010160: formation of animal organ boundary	5.89E-04
26	GO:0016045: detection of bacterium	5.89E-04
27	GO:0010359: regulation of anion channel activity	5.89E-04
28	GO:0051017: actin filament bundle assembly	5.95E-04
29	GO:0009664: plant-type cell wall organization	6.88E-04
30	GO:0009735: response to cytokinin	8.10E-04
31	GO:0051513: regulation of monopolar cell growth	8.43E-04
32	GO:0051639: actin filament network formation	8.43E-04
33	GO:0080170: hydrogen peroxide transmembrane transport	8.43E-04
34	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.43E-04
35	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	8.43E-04
36	GO:0009650: UV protection	8.43E-04
37	GO:1901332: negative regulation of lateral root development	8.43E-04
38	GO:0080167: response to karrikin	9.77E-04
39	GO:0010109: regulation of photosynthesis	1.12E-03
40	GO:0051764: actin crosslink formation	1.12E-03
41	GO:0045727: positive regulation of translation	1.12E-03
42	GO:0022622: root system development	1.12E-03
43	GO:0030104: water homeostasis	1.12E-03
44	GO:0010222: stem vascular tissue pattern formation	1.12E-03
45	GO:0009913: epidermal cell differentiation	1.74E-03
46	GO:0060918: auxin transport	1.74E-03
47	GO:0010337: regulation of salicylic acid metabolic process	1.74E-03
48	GO:0006751: glutathione catabolic process	1.74E-03
49	GO:0010027: thylakoid membrane organization	2.03E-03
50	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.09E-03
51	GO:0010019: chloroplast-nucleus signaling pathway	2.09E-03
52	GO:0009627: systemic acquired resistance	2.26E-03
53	GO:0045490: pectin catabolic process	2.31E-03
54	GO:0009772: photosynthetic electron transport in photosystem II	2.45E-03
55	GO:1900056: negative regulation of leaf senescence	2.45E-03
56	GO:1900057: positive regulation of leaf senescence	2.45E-03
57	GO:0032880: regulation of protein localization	2.45E-03
58	GO:0010311: lateral root formation	2.77E-03
59	GO:0008610: lipid biosynthetic process	2.84E-03
60	GO:0046620: regulation of organ growth	2.84E-03
61	GO:0055075: potassium ion homeostasis	2.84E-03
62	GO:0009651: response to salt stress	2.96E-03
63	GO:0009631: cold acclimation	3.04E-03
64	GO:0048527: lateral root development	3.04E-03
65	GO:0032544: plastid translation	3.25E-03
66	GO:0009051: pentose-phosphate shunt, oxidative branch	3.67E-03
67	GO:0009245: lipid A biosynthetic process	3.67E-03
68	GO:0034765: regulation of ion transmembrane transport	3.67E-03
69	GO:0009826: unidimensional cell growth	3.83E-03
70	GO:0009638: phototropism	4.12E-03
71	GO:0009416: response to light stimulus	4.20E-03
72	GO:0006949: syncytium formation	4.58E-03
73	GO:0006032: chitin catabolic process	4.58E-03
74	GO:0048829: root cap development	4.58E-03
75	GO:0046856: phosphatidylinositol dephosphorylation	5.05E-03
76	GO:0000038: very long-chain fatty acid metabolic process	5.05E-03
77	GO:0052544: defense response by callose deposition in cell wall	5.05E-03
78	GO:0048765: root hair cell differentiation	5.05E-03
79	GO:0008361: regulation of cell size	5.55E-03
80	GO:0016024: CDP-diacylglycerol biosynthetic process	5.55E-03
81	GO:0015706: nitrate transport	5.55E-03
82	GO:0010588: cotyledon vascular tissue pattern formation	6.06E-03
83	GO:2000012: regulation of auxin polar transport	6.06E-03
84	GO:0010102: lateral root morphogenesis	6.06E-03
85	GO:0009785: blue light signaling pathway	6.06E-03
86	GO:0010628: positive regulation of gene expression	6.06E-03
87	GO:0006108: malate metabolic process	6.06E-03
88	GO:0006006: glucose metabolic process	6.06E-03
89	GO:0010540: basipetal auxin transport	6.59E-03
90	GO:0010143: cutin biosynthetic process	6.59E-03
91	GO:0010053: root epidermal cell differentiation	7.13E-03
92	GO:0009825: multidimensional cell growth	7.13E-03
93	GO:0071732: cellular response to nitric oxide	7.13E-03
94	GO:0010030: positive regulation of seed germination	7.13E-03
95	GO:0010025: wax biosynthetic process	7.69E-03
96	GO:2000377: regulation of reactive oxygen species metabolic process	8.27E-03
97	GO:0019953: sexual reproduction	8.86E-03
98	GO:0007017: microtubule-based process	8.86E-03
99	GO:0048511: rhythmic process	9.46E-03
100	GO:0003333: amino acid transmembrane transport	9.46E-03
101	GO:0016998: cell wall macromolecule catabolic process	9.46E-03
102	GO:0030245: cellulose catabolic process	1.01E-02
103	GO:0009411: response to UV	1.07E-02
104	GO:0071369: cellular response to ethylene stimulus	1.07E-02
105	GO:0048443: stamen development	1.14E-02
106	GO:0006284: base-excision repair	1.14E-02
107	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.20E-02
108	GO:0008284: positive regulation of cell proliferation	1.20E-02
109	GO:0009737: response to abscisic acid	1.21E-02
110	GO:0042631: cellular response to water deprivation	1.27E-02
111	GO:0042391: regulation of membrane potential	1.27E-02
112	GO:0080022: primary root development	1.27E-02
113	GO:0034220: ion transmembrane transport	1.27E-02
114	GO:0006633: fatty acid biosynthetic process	1.30E-02
115	GO:0071472: cellular response to salt stress	1.34E-02
116	GO:0010305: leaf vascular tissue pattern formation	1.34E-02
117	GO:0040008: regulation of growth	1.36E-02
118	GO:0015986: ATP synthesis coupled proton transport	1.41E-02
119	GO:0042752: regulation of circadian rhythm	1.41E-02
120	GO:0000302: response to reactive oxygen species	1.56E-02
121	GO:0009630: gravitropism	1.63E-02
122	GO:0016032: viral process	1.63E-02
123	GO:0071281: cellular response to iron ion	1.71E-02
124	GO:0009639: response to red or far red light	1.78E-02
125	GO:0071805: potassium ion transmembrane transport	1.86E-02
126	GO:0009409: response to cold	1.93E-02
127	GO:0042128: nitrate assimilation	2.19E-02
128	GO:0005975: carbohydrate metabolic process	2.28E-02
129	GO:0030244: cellulose biosynthetic process	2.44E-02
130	GO:0010218: response to far red light	2.62E-02
131	GO:0006865: amino acid transport	2.80E-02
132	GO:0009637: response to blue light	2.89E-02
133	GO:0006099: tricarboxylic acid cycle	2.98E-02
134	GO:0034599: cellular response to oxidative stress	2.98E-02
135	GO:0030001: metal ion transport	3.17E-02
136	GO:0009640: photomorphogenesis	3.46E-02
137	GO:0010114: response to red light	3.46E-02
138	GO:0006869: lipid transport	3.59E-02
139	GO:0007165: signal transduction	3.63E-02
140	GO:0006855: drug transmembrane transport	3.86E-02
141	GO:0032259: methylation	3.86E-02
142	GO:0006281: DNA repair	4.03E-02
143	GO:0009408: response to heat	4.03E-02
144	GO:0009414: response to water deprivation	4.19E-02
145	GO:0009809: lignin biosynthetic process	4.28E-02
146	GO:0006364: rRNA processing	4.28E-02
147	GO:0042742: defense response to bacterium	4.32E-02
148	GO:0071555: cell wall organization	4.32E-02
149	GO:0006468: protein phosphorylation	4.34E-02
150	GO:0006857: oligopeptide transport	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0001872: (1->3)-beta-D-glucan binding	1.06E-05
4	GO:0016851: magnesium chelatase activity	1.06E-05
5	GO:0005528: FK506 binding	2.71E-05
6	GO:0004333: fumarate hydratase activity	1.58E-04
7	GO:0015245: fatty acid transporter activity	1.58E-04
8	GO:0030247: polysaccharide binding	2.37E-04
9	GO:0003839: gamma-glutamylcyclotransferase activity	3.60E-04
10	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	5.24E-04
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.28E-04
12	GO:0016788: hydrolase activity, acting on ester bonds	7.28E-04
13	GO:0030570: pectate lyase activity	8.52E-04
14	GO:0010011: auxin binding	1.12E-03
15	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.12E-03
16	GO:0010328: auxin influx transmembrane transporter activity	1.12E-03
17	GO:0052689: carboxylic ester hydrolase activity	1.13E-03
18	GO:0016746: transferase activity, transferring acyl groups	1.20E-03
19	GO:0008725: DNA-3-methyladenine glycosylase activity	1.41E-03
20	GO:0051015: actin filament binding	1.61E-03
21	GO:0016829: lyase activity	1.70E-03
22	GO:0016791: phosphatase activity	1.71E-03
23	GO:0004629: phospholipase C activity	1.74E-03
24	GO:0004130: cytochrome-c peroxidase activity	1.74E-03
25	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.74E-03
26	GO:0031177: phosphopantetheine binding	1.74E-03
27	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.74E-03
28	GO:0016688: L-ascorbate peroxidase activity	1.74E-03
29	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.74E-03
30	GO:0016832: aldehyde-lyase activity	2.09E-03
31	GO:0000035: acyl binding	2.09E-03
32	GO:0004435: phosphatidylinositol phospholipase C activity	2.09E-03
33	GO:0005242: inward rectifier potassium channel activity	2.09E-03
34	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.84E-03
35	GO:0015112: nitrate transmembrane transporter activity	4.12E-03
36	GO:0004568: chitinase activity	4.58E-03
37	GO:0015293: symporter activity	4.82E-03
38	GO:0005515: protein binding	5.02E-03
39	GO:0008794: arsenate reductase (glutaredoxin) activity	5.05E-03
40	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.55E-03
41	GO:0004565: beta-galactosidase activity	6.06E-03
42	GO:0010329: auxin efflux transmembrane transporter activity	6.06E-03
43	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.39E-03
44	GO:0008083: growth factor activity	6.59E-03
45	GO:0008266: poly(U) RNA binding	6.59E-03
46	GO:0004871: signal transducer activity	7.04E-03
47	GO:0004650: polygalacturonase activity	7.50E-03
48	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.69E-03
49	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.69E-03
50	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.69E-03
51	GO:0004176: ATP-dependent peptidase activity	9.46E-03
52	GO:0008810: cellulase activity	1.07E-02
53	GO:0030551: cyclic nucleotide binding	1.27E-02
54	GO:0005249: voltage-gated potassium channel activity	1.27E-02
55	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.33E-02
56	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.34E-02
57	GO:0050662: coenzyme binding	1.41E-02
58	GO:0019901: protein kinase binding	1.48E-02
59	GO:0004518: nuclease activity	1.63E-02
60	GO:0042802: identical protein binding	1.81E-02
61	GO:0005200: structural constituent of cytoskeleton	1.86E-02
62	GO:0015250: water channel activity	2.02E-02
63	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.62E-02
64	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.71E-02
65	GO:0003993: acid phosphatase activity	2.98E-02
66	GO:0050661: NADP binding	3.17E-02
67	GO:0004722: protein serine/threonine phosphatase activity	3.59E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	3.66E-02
69	GO:0009055: electron carrier activity	4.32E-02
70	GO:0016298: lipase activity	4.38E-02
71	GO:0015171: amino acid transmembrane transporter activity	4.60E-02
72	GO:0045330: aspartyl esterase activity	4.60E-02
73	GO:0004674: protein serine/threonine kinase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009534: chloroplast thylakoid	1.72E-10
3	GO:0009543: chloroplast thylakoid lumen	1.35E-09
4	GO:0009579: thylakoid	3.88E-08
5	GO:0009535: chloroplast thylakoid membrane	2.60E-07
6	GO:0010007: magnesium chelatase complex	4.55E-06
7	GO:0009507: chloroplast	1.24E-05
8	GO:0005886: plasma membrane	1.28E-05
9	GO:0005618: cell wall	1.22E-04
10	GO:0045239: tricarboxylic acid cycle enzyme complex	1.58E-04
11	GO:0043674: columella	1.58E-04
12	GO:0008180: COP9 signalosome	1.77E-04
13	GO:0030093: chloroplast photosystem I	3.60E-04
14	GO:0031977: thylakoid lumen	4.66E-04
15	GO:0009897: external side of plasma membrane	5.89E-04
16	GO:0009941: chloroplast envelope	7.01E-04
17	GO:0015630: microtubule cytoskeleton	8.43E-04
18	GO:0032432: actin filament bundle	8.43E-04
19	GO:0010287: plastoglobule	1.44E-03
20	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.74E-03
21	GO:0031225: anchored component of membrane	2.05E-03
22	GO:0005576: extracellular region	2.37E-03
23	GO:0042807: central vacuole	2.45E-03
24	GO:0009986: cell surface	2.45E-03
25	GO:0019005: SCF ubiquitin ligase complex	2.64E-03
26	GO:0046658: anchored component of plasma membrane	3.30E-03
27	GO:0048046: apoplast	3.52E-03
28	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.67E-03
29	GO:0009570: chloroplast stroma	4.62E-03
30	GO:0005884: actin filament	5.05E-03
31	GO:0000502: proteasome complex	5.77E-03
32	GO:0009508: plastid chromosome	6.06E-03
33	GO:0030095: chloroplast photosystem II	6.59E-03
34	GO:0009654: photosystem II oxygen evolving complex	8.86E-03
35	GO:0015629: actin cytoskeleton	1.07E-02
36	GO:0009523: photosystem II	1.48E-02
37	GO:0019898: extrinsic component of membrane	1.48E-02
38	GO:0009505: plant-type cell wall	1.72E-02
39	GO:0010319: stromule	1.86E-02
40	GO:0009295: nucleoid	1.86E-02
41	GO:0016020: membrane	2.04E-02
42	GO:0005856: cytoskeleton	3.76E-02
43	GO:0005768: endosome	3.79E-02
44	GO:0010008: endosome membrane	4.93E-02