GO Enrichment Analysis of Co-expressed Genes with
AT2G38780
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 7 | GO:0006066: alcohol metabolic process | 0.00E+00 |
| 8 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 9 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 10 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 11 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 12 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 13 | GO:0009658: chloroplast organization | 1.39E-06 |
| 14 | GO:0015979: photosynthesis | 4.48E-06 |
| 15 | GO:0009773: photosynthetic electron transport in photosystem I | 1.19E-05 |
| 16 | GO:0031365: N-terminal protein amino acid modification | 4.30E-05 |
| 17 | GO:0006400: tRNA modification | 1.18E-04 |
| 18 | GO:0034337: RNA folding | 1.88E-04 |
| 19 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.88E-04 |
| 20 | GO:0071482: cellular response to light stimulus | 1.88E-04 |
| 21 | GO:0006427: histidyl-tRNA aminoacylation | 1.88E-04 |
| 22 | GO:0015969: guanosine tetraphosphate metabolic process | 1.88E-04 |
| 23 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.88E-04 |
| 24 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.88E-04 |
| 25 | GO:0000481: maturation of 5S rRNA | 1.88E-04 |
| 26 | GO:1904964: positive regulation of phytol biosynthetic process | 1.88E-04 |
| 27 | GO:0033481: galacturonate biosynthetic process | 1.88E-04 |
| 28 | GO:0043686: co-translational protein modification | 1.88E-04 |
| 29 | GO:0018298: protein-chromophore linkage | 3.76E-04 |
| 30 | GO:0010024: phytochromobilin biosynthetic process | 4.24E-04 |
| 31 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.24E-04 |
| 32 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.24E-04 |
| 33 | GO:0034755: iron ion transmembrane transport | 4.24E-04 |
| 34 | GO:0010115: regulation of abscisic acid biosynthetic process | 4.24E-04 |
| 35 | GO:0097054: L-glutamate biosynthetic process | 4.24E-04 |
| 36 | GO:0006557: S-adenosylmethioninamine biosynthetic process | 6.92E-04 |
| 37 | GO:0010581: regulation of starch biosynthetic process | 6.92E-04 |
| 38 | GO:0006788: heme oxidation | 6.92E-04 |
| 39 | GO:0006753: nucleoside phosphate metabolic process | 6.92E-04 |
| 40 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.29E-04 |
| 41 | GO:0010371: regulation of gibberellin biosynthetic process | 9.86E-04 |
| 42 | GO:0009152: purine ribonucleotide biosynthetic process | 9.86E-04 |
| 43 | GO:0046653: tetrahydrofolate metabolic process | 9.86E-04 |
| 44 | GO:0006537: glutamate biosynthetic process | 9.86E-04 |
| 45 | GO:2001141: regulation of RNA biosynthetic process | 9.86E-04 |
| 46 | GO:0019676: ammonia assimilation cycle | 1.31E-03 |
| 47 | GO:0015994: chlorophyll metabolic process | 1.31E-03 |
| 48 | GO:0031122: cytoplasmic microtubule organization | 1.31E-03 |
| 49 | GO:0006461: protein complex assembly | 1.66E-03 |
| 50 | GO:0080110: sporopollenin biosynthetic process | 1.66E-03 |
| 51 | GO:0006564: L-serine biosynthetic process | 1.66E-03 |
| 52 | GO:0042549: photosystem II stabilization | 2.05E-03 |
| 53 | GO:0000470: maturation of LSU-rRNA | 2.05E-03 |
| 54 | GO:0016554: cytidine to uridine editing | 2.05E-03 |
| 55 | GO:0006828: manganese ion transport | 2.05E-03 |
| 56 | GO:0010190: cytochrome b6f complex assembly | 2.05E-03 |
| 57 | GO:0006596: polyamine biosynthetic process | 2.05E-03 |
| 58 | GO:0006561: proline biosynthetic process | 2.05E-03 |
| 59 | GO:0048759: xylem vessel member cell differentiation | 2.05E-03 |
| 60 | GO:0010019: chloroplast-nucleus signaling pathway | 2.46E-03 |
| 61 | GO:0010027: thylakoid membrane organization | 2.58E-03 |
| 62 | GO:0010196: nonphotochemical quenching | 2.90E-03 |
| 63 | GO:0050829: defense response to Gram-negative bacterium | 2.90E-03 |
| 64 | GO:0015937: coenzyme A biosynthetic process | 2.90E-03 |
| 65 | GO:0009645: response to low light intensity stimulus | 2.90E-03 |
| 66 | GO:0048564: photosystem I assembly | 3.36E-03 |
| 67 | GO:0009704: de-etiolation | 3.36E-03 |
| 68 | GO:0032508: DNA duplex unwinding | 3.36E-03 |
| 69 | GO:0009657: plastid organization | 3.84E-03 |
| 70 | GO:0019430: removal of superoxide radicals | 3.84E-03 |
| 71 | GO:0017004: cytochrome complex assembly | 3.84E-03 |
| 72 | GO:0009853: photorespiration | 4.26E-03 |
| 73 | GO:0009637: response to blue light | 4.26E-03 |
| 74 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.35E-03 |
| 75 | GO:0006098: pentose-phosphate shunt | 4.35E-03 |
| 76 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 4.35E-03 |
| 77 | GO:0000373: Group II intron splicing | 4.35E-03 |
| 78 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.87E-03 |
| 79 | GO:1900865: chloroplast RNA modification | 4.87E-03 |
| 80 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.87E-03 |
| 81 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.42E-03 |
| 82 | GO:0019538: protein metabolic process | 5.42E-03 |
| 83 | GO:0009688: abscisic acid biosynthetic process | 5.42E-03 |
| 84 | GO:0048829: root cap development | 5.42E-03 |
| 85 | GO:0010114: response to red light | 5.48E-03 |
| 86 | GO:0006816: calcium ion transport | 5.99E-03 |
| 87 | GO:0008285: negative regulation of cell proliferation | 5.99E-03 |
| 88 | GO:0009073: aromatic amino acid family biosynthetic process | 5.99E-03 |
| 89 | GO:0043085: positive regulation of catalytic activity | 5.99E-03 |
| 90 | GO:0006879: cellular iron ion homeostasis | 5.99E-03 |
| 91 | GO:0006352: DNA-templated transcription, initiation | 5.99E-03 |
| 92 | GO:0009750: response to fructose | 5.99E-03 |
| 93 | GO:0006855: drug transmembrane transport | 6.39E-03 |
| 94 | GO:0006094: gluconeogenesis | 7.19E-03 |
| 95 | GO:0005986: sucrose biosynthetic process | 7.19E-03 |
| 96 | GO:0010628: positive regulation of gene expression | 7.19E-03 |
| 97 | GO:0006006: glucose metabolic process | 7.19E-03 |
| 98 | GO:0010207: photosystem II assembly | 7.82E-03 |
| 99 | GO:0009225: nucleotide-sugar metabolic process | 8.47E-03 |
| 100 | GO:0006810: transport | 9.80E-03 |
| 101 | GO:0006487: protein N-linked glycosylation | 9.83E-03 |
| 102 | GO:0007010: cytoskeleton organization | 9.83E-03 |
| 103 | GO:0010073: meristem maintenance | 1.05E-02 |
| 104 | GO:0016575: histone deacetylation | 1.05E-02 |
| 105 | GO:0009695: jasmonic acid biosynthetic process | 1.05E-02 |
| 106 | GO:0032259: methylation | 1.12E-02 |
| 107 | GO:0061077: chaperone-mediated protein folding | 1.13E-02 |
| 108 | GO:0031408: oxylipin biosynthetic process | 1.13E-02 |
| 109 | GO:0003333: amino acid transmembrane transport | 1.13E-02 |
| 110 | GO:0010227: floral organ abscission | 1.28E-02 |
| 111 | GO:0010584: pollen exine formation | 1.35E-02 |
| 112 | GO:0042744: hydrogen peroxide catabolic process | 1.50E-02 |
| 113 | GO:0042335: cuticle development | 1.51E-02 |
| 114 | GO:0010087: phloem or xylem histogenesis | 1.51E-02 |
| 115 | GO:0010182: sugar mediated signaling pathway | 1.60E-02 |
| 116 | GO:0048544: recognition of pollen | 1.68E-02 |
| 117 | GO:0055114: oxidation-reduction process | 1.70E-02 |
| 118 | GO:0000302: response to reactive oxygen species | 1.85E-02 |
| 119 | GO:0019761: glucosinolate biosynthetic process | 1.94E-02 |
| 120 | GO:0009735: response to cytokinin | 2.19E-02 |
| 121 | GO:0001666: response to hypoxia | 2.41E-02 |
| 122 | GO:0009416: response to light stimulus | 2.45E-02 |
| 123 | GO:0042128: nitrate assimilation | 2.61E-02 |
| 124 | GO:0015995: chlorophyll biosynthetic process | 2.71E-02 |
| 125 | GO:0000160: phosphorelay signal transduction system | 3.02E-02 |
| 126 | GO:0010218: response to far red light | 3.12E-02 |
| 127 | GO:0009631: cold acclimation | 3.23E-02 |
| 128 | GO:0006865: amino acid transport | 3.34E-02 |
| 129 | GO:0034599: cellular response to oxidative stress | 3.56E-02 |
| 130 | GO:0006839: mitochondrial transport | 3.78E-02 |
| 131 | GO:0009744: response to sucrose | 4.13E-02 |
| 132 | GO:0009640: photomorphogenesis | 4.13E-02 |
| 133 | GO:0009926: auxin polar transport | 4.13E-02 |
| 134 | GO:0045454: cell redox homeostasis | 4.18E-02 |
| 135 | GO:0009644: response to high light intensity | 4.36E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 2 | GO:0046577: long-chain-alcohol oxidase activity | 0.00E+00 |
| 3 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 4 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 5 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 6 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 7 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 8 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 9 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 10 | GO:0005528: FK506 binding | 3.99E-05 |
| 11 | GO:0004033: aldo-keto reductase (NADP) activity | 1.51E-04 |
| 12 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.88E-04 |
| 13 | GO:0042586: peptide deformylase activity | 1.88E-04 |
| 14 | GO:0010945: CoA pyrophosphatase activity | 1.88E-04 |
| 15 | GO:0008568: microtubule-severing ATPase activity | 1.88E-04 |
| 16 | GO:0004821: histidine-tRNA ligase activity | 1.88E-04 |
| 17 | GO:0004321: fatty-acyl-CoA synthase activity | 1.88E-04 |
| 18 | GO:0016768: spermine synthase activity | 1.88E-04 |
| 19 | GO:0016041: glutamate synthase (ferredoxin) activity | 1.88E-04 |
| 20 | GO:0016168: chlorophyll binding | 2.85E-04 |
| 21 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.24E-04 |
| 22 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.24E-04 |
| 23 | GO:0008728: GTP diphosphokinase activity | 4.24E-04 |
| 24 | GO:0047746: chlorophyllase activity | 4.24E-04 |
| 25 | GO:0031409: pigment binding | 6.80E-04 |
| 26 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.92E-04 |
| 27 | GO:0004014: adenosylmethionine decarboxylase activity | 6.92E-04 |
| 28 | GO:0050307: sucrose-phosphate phosphatase activity | 6.92E-04 |
| 29 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.92E-04 |
| 30 | GO:0070402: NADPH binding | 6.92E-04 |
| 31 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.53E-04 |
| 32 | GO:0001872: (1->3)-beta-D-glucan binding | 9.86E-04 |
| 33 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 9.86E-04 |
| 34 | GO:0048487: beta-tubulin binding | 9.86E-04 |
| 35 | GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 9.86E-04 |
| 36 | GO:0001053: plastid sigma factor activity | 1.31E-03 |
| 37 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.31E-03 |
| 38 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.31E-03 |
| 39 | GO:0016987: sigma factor activity | 1.31E-03 |
| 40 | GO:0010328: auxin influx transmembrane transporter activity | 1.31E-03 |
| 41 | GO:0043495: protein anchor | 1.31E-03 |
| 42 | GO:0050378: UDP-glucuronate 4-epimerase activity | 1.31E-03 |
| 43 | GO:0004392: heme oxygenase (decyclizing) activity | 1.31E-03 |
| 44 | GO:0004659: prenyltransferase activity | 1.31E-03 |
| 45 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.66E-03 |
| 46 | GO:0004332: fructose-bisphosphate aldolase activity | 2.05E-03 |
| 47 | GO:0004130: cytochrome-c peroxidase activity | 2.05E-03 |
| 48 | GO:0000210: NAD+ diphosphatase activity | 2.05E-03 |
| 49 | GO:0016688: L-ascorbate peroxidase activity | 2.05E-03 |
| 50 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.46E-03 |
| 51 | GO:0008235: metalloexopeptidase activity | 2.90E-03 |
| 52 | GO:0019899: enzyme binding | 2.90E-03 |
| 53 | GO:0043022: ribosome binding | 3.36E-03 |
| 54 | GO:0015238: drug transmembrane transporter activity | 3.53E-03 |
| 55 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.84E-03 |
| 56 | GO:0016207: 4-coumarate-CoA ligase activity | 4.35E-03 |
| 57 | GO:0005381: iron ion transmembrane transporter activity | 4.87E-03 |
| 58 | GO:0005384: manganese ion transmembrane transporter activity | 4.87E-03 |
| 59 | GO:0008168: methyltransferase activity | 5.24E-03 |
| 60 | GO:0008047: enzyme activator activity | 5.42E-03 |
| 61 | GO:0015386: potassium:proton antiporter activity | 5.99E-03 |
| 62 | GO:0004177: aminopeptidase activity | 5.99E-03 |
| 63 | GO:0016787: hydrolase activity | 6.12E-03 |
| 64 | GO:0046872: metal ion binding | 6.93E-03 |
| 65 | GO:0015095: magnesium ion transmembrane transporter activity | 7.19E-03 |
| 66 | GO:0004565: beta-galactosidase activity | 7.19E-03 |
| 67 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.19E-03 |
| 68 | GO:0004407: histone deacetylase activity | 9.83E-03 |
| 69 | GO:0015079: potassium ion transmembrane transporter activity | 1.05E-02 |
| 70 | GO:0022891: substrate-specific transmembrane transporter activity | 1.28E-02 |
| 71 | GO:0005509: calcium ion binding | 1.57E-02 |
| 72 | GO:0001085: RNA polymerase II transcription factor binding | 1.60E-02 |
| 73 | GO:0004791: thioredoxin-disulfide reductase activity | 1.68E-02 |
| 74 | GO:0050662: coenzyme binding | 1.68E-02 |
| 75 | GO:0015297: antiporter activity | 1.74E-02 |
| 76 | GO:0004518: nuclease activity | 1.94E-02 |
| 77 | GO:0000156: phosphorelay response regulator activity | 2.03E-02 |
| 78 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.03E-02 |
| 79 | GO:0003824: catalytic activity | 2.04E-02 |
| 80 | GO:0005215: transporter activity | 2.06E-02 |
| 81 | GO:0016597: amino acid binding | 2.31E-02 |
| 82 | GO:0051213: dioxygenase activity | 2.41E-02 |
| 83 | GO:0008375: acetylglucosaminyltransferase activity | 2.61E-02 |
| 84 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 2.61E-02 |
| 85 | GO:0016491: oxidoreductase activity | 2.67E-02 |
| 86 | GO:0030247: polysaccharide binding | 2.71E-02 |
| 87 | GO:0004721: phosphoprotein phosphatase activity | 2.71E-02 |
| 88 | GO:0004683: calmodulin-dependent protein kinase activity | 2.71E-02 |
| 89 | GO:0016788: hydrolase activity, acting on ester bonds | 2.88E-02 |
| 90 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.23E-02 |
| 91 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.45E-02 |
| 92 | GO:0030246: carbohydrate binding | 3.54E-02 |
| 93 | GO:0050661: NADP binding | 3.78E-02 |
| 94 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.78E-02 |
| 95 | GO:0004185: serine-type carboxypeptidase activity | 4.13E-02 |
| 96 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.36E-02 |
| 97 | GO:0043621: protein self-association | 4.36E-02 |
| 98 | GO:0015293: symporter activity | 4.48E-02 |
| 99 | GO:0051287: NAD binding | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.58E-35 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.74E-18 |
| 4 | GO:0009570: chloroplast stroma | 8.36E-11 |
| 5 | GO:0009941: chloroplast envelope | 3.90E-10 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 3.70E-09 |
| 7 | GO:0031977: thylakoid lumen | 1.04E-07 |
| 8 | GO:0009579: thylakoid | 1.26E-07 |
| 9 | GO:0009534: chloroplast thylakoid | 1.32E-07 |
| 10 | GO:0031969: chloroplast membrane | 3.35E-05 |
| 11 | GO:0009523: photosystem II | 1.43E-04 |
| 12 | GO:0009782: photosystem I antenna complex | 1.88E-04 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.29E-04 |
| 14 | GO:0030095: chloroplast photosystem II | 5.47E-04 |
| 15 | GO:0030076: light-harvesting complex | 6.12E-04 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 8.29E-04 |
| 17 | GO:0042651: thylakoid membrane | 8.29E-04 |
| 18 | GO:0019898: extrinsic component of membrane | 1.68E-03 |
| 19 | GO:0010287: plastoglobule | 1.96E-03 |
| 20 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.46E-03 |
| 21 | GO:0030529: intracellular ribonucleoprotein complex | 2.58E-03 |
| 22 | GO:0009533: chloroplast stromal thylakoid | 2.90E-03 |
| 23 | GO:0032040: small-subunit processome | 6.58E-03 |
| 24 | GO:0009522: photosystem I | 1.68E-02 |
| 25 | GO:0032580: Golgi cisterna membrane | 2.13E-02 |
| 26 | GO:0005778: peroxisomal membrane | 2.22E-02 |
| 27 | GO:0016020: membrane | 2.32E-02 |
| 28 | GO:0046658: anchored component of plasma membrane | 2.42E-02 |
| 29 | GO:0005667: transcription factor complex | 2.61E-02 |
| 30 | GO:0016021: integral component of membrane | 3.05E-02 |