Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G38540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:1905499: trichome papilla formation0.00E+00
5GO:0009773: photosynthetic electron transport in photosystem I1.67E-08
6GO:0015979: photosynthesis8.78E-07
7GO:0032544: plastid translation1.63E-05
8GO:0042335: cuticle development2.37E-05
9GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.24E-05
10GO:0042254: ribosome biogenesis1.83E-04
11GO:0071555: cell wall organization2.38E-04
12GO:0071588: hydrogen peroxide mediated signaling pathway3.47E-04
13GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.47E-04
14GO:0006434: seryl-tRNA aminoacylation3.47E-04
15GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process3.47E-04
16GO:1904966: positive regulation of vitamin E biosynthetic process3.47E-04
17GO:0010442: guard cell morphogenesis3.47E-04
18GO:1901599: (-)-pinoresinol biosynthetic process3.47E-04
19GO:0071277: cellular response to calcium ion3.47E-04
20GO:1904964: positive regulation of phytol biosynthetic process3.47E-04
21GO:0055114: oxidation-reduction process4.26E-04
22GO:0009409: response to cold5.52E-04
23GO:0006810: transport6.85E-04
24GO:0030388: fructose 1,6-bisphosphate metabolic process7.56E-04
25GO:0043039: tRNA aminoacylation7.56E-04
26GO:0052541: plant-type cell wall cellulose metabolic process7.56E-04
27GO:0015786: UDP-glucose transport7.56E-04
28GO:1902326: positive regulation of chlorophyll biosynthetic process7.56E-04
29GO:0042742: defense response to bacterium8.15E-04
30GO:0018119: peptidyl-cysteine S-nitrosylation8.76E-04
31GO:0009658: chloroplast organization8.82E-04
32GO:0009817: defense response to fungus, incompatible interaction1.14E-03
33GO:0018298: protein-chromophore linkage1.14E-03
34GO:0090506: axillary shoot meristem initiation1.22E-03
35GO:0006000: fructose metabolic process1.22E-03
36GO:0071492: cellular response to UV-A1.22E-03
37GO:0006696: ergosterol biosynthetic process1.22E-03
38GO:0006065: UDP-glucuronate biosynthetic process1.22E-03
39GO:0015783: GDP-fucose transport1.22E-03
40GO:0009735: response to cytokinin1.66E-03
41GO:0006633: fatty acid biosynthetic process1.75E-03
42GO:0045454: cell redox homeostasis1.76E-03
43GO:0072334: UDP-galactose transmembrane transport1.76E-03
44GO:0043572: plastid fission1.76E-03
45GO:0007231: osmosensory signaling pathway1.76E-03
46GO:0009768: photosynthesis, light harvesting in photosystem I1.94E-03
47GO:0006869: lipid transport2.07E-03
48GO:0061077: chaperone-mediated protein folding2.13E-03
49GO:0030245: cellulose catabolic process2.33E-03
50GO:0071486: cellular response to high light intensity2.37E-03
51GO:0009765: photosynthesis, light harvesting2.37E-03
52GO:0045727: positive regulation of translation2.37E-03
53GO:2000122: negative regulation of stomatal complex development2.37E-03
54GO:0033500: carbohydrate homeostasis2.37E-03
55GO:0031122: cytoplasmic microtubule organization2.37E-03
56GO:0010037: response to carbon dioxide2.37E-03
57GO:0009956: radial pattern formation2.37E-03
58GO:0015976: carbon utilization2.37E-03
59GO:0019722: calcium-mediated signaling2.77E-03
60GO:0016117: carotenoid biosynthetic process3.00E-03
61GO:0006665: sphingolipid metabolic process3.03E-03
62GO:0048359: mucilage metabolic process involved in seed coat development3.03E-03
63GO:0016120: carotene biosynthetic process3.03E-03
64GO:0006564: L-serine biosynthetic process3.03E-03
65GO:0006656: phosphatidylcholine biosynthetic process3.03E-03
66GO:0010236: plastoquinone biosynthetic process3.03E-03
67GO:0016123: xanthophyll biosynthetic process3.03E-03
68GO:0000413: protein peptidyl-prolyl isomerization3.24E-03
69GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.74E-03
70GO:0009913: epidermal cell differentiation3.74E-03
71GO:0016554: cytidine to uridine editing3.74E-03
72GO:0010190: cytochrome b6f complex assembly3.74E-03
73GO:0018258: protein O-linked glycosylation via hydroxyproline3.74E-03
74GO:0010405: arabinogalactan protein metabolic process3.74E-03
75GO:0009955: adaxial/abaxial pattern specification4.50E-03
76GO:0010067: procambium histogenesis4.50E-03
77GO:0006694: steroid biosynthetic process4.50E-03
78GO:1901259: chloroplast rRNA processing4.50E-03
79GO:0010189: vitamin E biosynthetic process4.50E-03
80GO:0010019: chloroplast-nucleus signaling pathway4.50E-03
81GO:0048444: floral organ morphogenesis4.50E-03
82GO:0010555: response to mannitol4.50E-03
83GO:0009395: phospholipid catabolic process5.32E-03
84GO:0009645: response to low light intensity stimulus5.32E-03
85GO:0050790: regulation of catalytic activity5.32E-03
86GO:0007267: cell-cell signaling5.55E-03
87GO:0007155: cell adhesion6.17E-03
88GO:0030091: protein repair6.17E-03
89GO:0008610: lipid biosynthetic process6.17E-03
90GO:0009819: drought recovery6.17E-03
91GO:0009642: response to light intensity6.17E-03
92GO:0009704: de-etiolation6.17E-03
93GO:0006875: cellular metal ion homeostasis6.17E-03
94GO:0006002: fructose 6-phosphate metabolic process7.08E-03
95GO:0009808: lignin metabolic process7.08E-03
96GO:0010411: xyloglucan metabolic process7.35E-03
97GO:0010206: photosystem II repair8.04E-03
98GO:0034765: regulation of ion transmembrane transport8.04E-03
99GO:0090333: regulation of stomatal closure8.04E-03
100GO:0009834: plant-type secondary cell wall biogenesis8.99E-03
101GO:0042761: very long-chain fatty acid biosynthetic process9.03E-03
102GO:1900865: chloroplast RNA modification9.03E-03
103GO:0010192: mucilage biosynthetic process1.01E-02
104GO:0019538: protein metabolic process1.01E-02
105GO:0043069: negative regulation of programmed cell death1.01E-02
106GO:0034599: cellular response to oxidative stress1.08E-02
107GO:0010015: root morphogenesis1.12E-02
108GO:0000038: very long-chain fatty acid metabolic process1.12E-02
109GO:0006816: calcium ion transport1.12E-02
110GO:0043085: positive regulation of catalytic activity1.12E-02
111GO:0000272: polysaccharide catabolic process1.12E-02
112GO:0006415: translational termination1.12E-02
113GO:0009807: lignan biosynthetic process1.12E-02
114GO:0006631: fatty acid metabolic process1.23E-02
115GO:0006820: anion transport1.23E-02
116GO:0045037: protein import into chloroplast stroma1.23E-02
117GO:0005986: sucrose biosynthetic process1.34E-02
118GO:0050826: response to freezing1.34E-02
119GO:0009725: response to hormone1.34E-02
120GO:0006094: gluconeogenesis1.34E-02
121GO:0042546: cell wall biogenesis1.39E-02
122GO:0009644: response to high light intensity1.45E-02
123GO:0010143: cutin biosynthetic process1.46E-02
124GO:0010207: photosystem II assembly1.46E-02
125GO:0010020: chloroplast fission1.46E-02
126GO:0009933: meristem structural organization1.46E-02
127GO:0019253: reductive pentose-phosphate cycle1.46E-02
128GO:0010223: secondary shoot formation1.46E-02
129GO:0009934: regulation of meristem structural organization1.46E-02
130GO:0009969: xyloglucan biosynthetic process1.59E-02
131GO:0005985: sucrose metabolic process1.59E-02
132GO:0070588: calcium ion transmembrane transport1.59E-02
133GO:0010025: wax biosynthetic process1.71E-02
134GO:0006636: unsaturated fatty acid biosynthetic process1.71E-02
135GO:0009833: plant-type primary cell wall biogenesis1.71E-02
136GO:0006071: glycerol metabolic process1.71E-02
137GO:0019762: glucosinolate catabolic process1.71E-02
138GO:0019344: cysteine biosynthetic process1.85E-02
139GO:0000027: ribosomal large subunit assembly1.85E-02
140GO:0006487: protein N-linked glycosylation1.85E-02
141GO:0051302: regulation of cell division1.98E-02
142GO:0010026: trichome differentiation1.98E-02
143GO:0007017: microtubule-based process1.98E-02
144GO:0009269: response to desiccation2.12E-02
145GO:0016998: cell wall macromolecule catabolic process2.12E-02
146GO:0007005: mitochondrion organization2.26E-02
147GO:0080092: regulation of pollen tube growth2.26E-02
148GO:0019748: secondary metabolic process2.26E-02
149GO:0009294: DNA mediated transformation2.40E-02
150GO:0001944: vasculature development2.40E-02
151GO:0010091: trichome branching2.55E-02
152GO:0010089: xylem development2.55E-02
153GO:0042631: cellular response to water deprivation2.85E-02
154GO:0000271: polysaccharide biosynthetic process2.85E-02
155GO:0042391: regulation of membrane potential2.85E-02
156GO:0010087: phloem or xylem histogenesis2.85E-02
157GO:0045489: pectin biosynthetic process3.01E-02
158GO:0006662: glycerol ether metabolic process3.01E-02
159GO:0010305: leaf vascular tissue pattern formation3.01E-02
160GO:0055085: transmembrane transport3.32E-02
161GO:0071554: cell wall organization or biogenesis3.50E-02
162GO:0000302: response to reactive oxygen species3.50E-02
163GO:0002229: defense response to oomycetes3.50E-02
164GO:0016132: brassinosteroid biosynthetic process3.50E-02
165GO:0016042: lipid catabolic process3.51E-02
166GO:0042744: hydrogen peroxide catabolic process3.66E-02
167GO:0007264: small GTPase mediated signal transduction3.67E-02
168GO:0010090: trichome morphogenesis3.84E-02
169GO:1901657: glycosyl compound metabolic process3.84E-02
170GO:0019760: glucosinolate metabolic process4.01E-02
171GO:0071805: potassium ion transmembrane transport4.19E-02
172GO:0007623: circadian rhythm4.43E-02
173GO:0045490: pectin catabolic process4.43E-02
174GO:0016126: sterol biosynthetic process4.55E-02
175GO:0010027: thylakoid membrane organization4.55E-02
176GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.73E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0047259: glucomannan 4-beta-mannosyltransferase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0051920: peroxiredoxin activity3.87E-08
14GO:0019843: rRNA binding1.30E-07
15GO:0016209: antioxidant activity1.37E-07
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.53E-05
17GO:0016168: chlorophyll binding9.53E-05
18GO:0051753: mannan synthase activity2.30E-04
19GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.30E-04
20GO:0004560: alpha-L-fucosidase activity3.47E-04
21GO:0004828: serine-tRNA ligase activity3.47E-04
22GO:0008568: microtubule-severing ATPase activity3.47E-04
23GO:0080132: fatty acid alpha-hydroxylase activity3.47E-04
24GO:0015088: copper uptake transmembrane transporter activity3.47E-04
25GO:0051996: squalene synthase activity3.47E-04
26GO:0042349: guiding stereospecific synthesis activity3.47E-04
27GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.47E-04
28GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.12E-04
29GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.56E-04
30GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.56E-04
31GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.56E-04
32GO:0000234: phosphoethanolamine N-methyltransferase activity7.56E-04
33GO:0008967: phosphoglycolate phosphatase activity7.56E-04
34GO:0042389: omega-3 fatty acid desaturase activity7.56E-04
35GO:0010297: heteropolysaccharide binding7.56E-04
36GO:0004617: phosphoglycerate dehydrogenase activity7.56E-04
37GO:0004601: peroxidase activity8.82E-04
38GO:0016788: hydrolase activity, acting on ester bonds9.10E-04
39GO:0004565: beta-galactosidase activity1.13E-03
40GO:0005504: fatty acid binding1.22E-03
41GO:0050734: hydroxycinnamoyltransferase activity1.22E-03
42GO:0005457: GDP-fucose transmembrane transporter activity1.22E-03
43GO:0003979: UDP-glucose 6-dehydrogenase activity1.22E-03
44GO:0052689: carboxylic ester hydrolase activity1.53E-03
45GO:0031409: pigment binding1.59E-03
46GO:0005528: FK506 binding1.76E-03
47GO:0016149: translation release factor activity, codon specific1.76E-03
48GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.76E-03
49GO:0005460: UDP-glucose transmembrane transporter activity1.76E-03
50GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.76E-03
51GO:0045430: chalcone isomerase activity2.37E-03
52GO:1990137: plant seed peroxidase activity2.37E-03
53GO:0052793: pectin acetylesterase activity2.37E-03
54GO:0004506: squalene monooxygenase activity2.37E-03
55GO:0043495: protein anchor2.37E-03
56GO:0004659: prenyltransferase activity2.37E-03
57GO:0008810: cellulase activity2.54E-03
58GO:0022891: substrate-specific transmembrane transporter activity2.54E-03
59GO:0008381: mechanically-gated ion channel activity3.03E-03
60GO:0009922: fatty acid elongase activity3.03E-03
61GO:0005459: UDP-galactose transmembrane transporter activity3.03E-03
62GO:0016773: phosphotransferase activity, alcohol group as acceptor3.03E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity3.74E-03
64GO:0004130: cytochrome-c peroxidase activity3.74E-03
65GO:0016688: L-ascorbate peroxidase activity3.74E-03
66GO:0048038: quinone binding4.31E-03
67GO:0016762: xyloglucan:xyloglucosyl transferase activity4.31E-03
68GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.50E-03
69GO:0005242: inward rectifier potassium channel activity4.50E-03
70GO:0008289: lipid binding4.55E-03
71GO:0019899: enzyme binding5.32E-03
72GO:0052747: sinapyl alcohol dehydrogenase activity6.17E-03
73GO:0004033: aldo-keto reductase (NADP) activity6.17E-03
74GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.08E-03
75GO:0016798: hydrolase activity, acting on glycosyl bonds7.35E-03
76GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.04E-03
77GO:0008889: glycerophosphodiester phosphodiesterase activity8.04E-03
78GO:0003747: translation release factor activity8.04E-03
79GO:0005381: iron ion transmembrane transporter activity9.03E-03
80GO:0008047: enzyme activator activity1.01E-02
81GO:0030234: enzyme regulator activity1.01E-02
82GO:0009055: electron carrier activity1.10E-02
83GO:0005089: Rho guanyl-nucleotide exchange factor activity1.12E-02
84GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.13E-02
85GO:0003735: structural constituent of ribosome1.14E-02
86GO:0008378: galactosyltransferase activity1.23E-02
87GO:0045551: cinnamyl-alcohol dehydrogenase activity1.23E-02
88GO:0042802: identical protein binding1.33E-02
89GO:0004089: carbonate dehydratase activity1.34E-02
90GO:0031072: heat shock protein binding1.34E-02
91GO:0004185: serine-type carboxypeptidase activity1.34E-02
92GO:0005262: calcium channel activity1.34E-02
93GO:0051287: NAD binding1.62E-02
94GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.71E-02
95GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.71E-02
96GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.71E-02
97GO:0004857: enzyme inhibitor activity1.85E-02
98GO:0008324: cation transmembrane transporter activity1.98E-02
99GO:0004176: ATP-dependent peptidase activity2.12E-02
100GO:0033612: receptor serine/threonine kinase binding2.12E-02
101GO:0045735: nutrient reservoir activity2.14E-02
102GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.26E-02
103GO:0030570: pectate lyase activity2.40E-02
104GO:0030599: pectinesterase activity2.42E-02
105GO:0008514: organic anion transmembrane transporter activity2.55E-02
106GO:0005102: receptor binding2.70E-02
107GO:0047134: protein-disulfide reductase activity2.70E-02
108GO:0003824: catalytic activity2.75E-02
109GO:0030551: cyclic nucleotide binding2.85E-02
110GO:0005249: voltage-gated potassium channel activity2.85E-02
111GO:0042803: protein homodimerization activity2.97E-02
112GO:0016758: transferase activity, transferring hexosyl groups3.14E-02
113GO:0004791: thioredoxin-disulfide reductase activity3.17E-02
114GO:0050662: coenzyme binding3.17E-02
115GO:0004872: receptor activity3.33E-02
116GO:0016757: transferase activity, transferring glycosyl groups3.45E-02
117GO:0000156: phosphorelay response regulator activity3.84E-02
118GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.84E-02
119GO:0046872: metal ion binding3.90E-02
120GO:0016759: cellulose synthase activity4.01E-02
121GO:0016722: oxidoreductase activity, oxidizing metal ions4.19E-02
122GO:0008237: metallopeptidase activity4.19E-02
123GO:0005200: structural constituent of cytoskeleton4.19E-02
124GO:0016413: O-acetyltransferase activity4.36E-02
125GO:0016597: amino acid binding4.36E-02
126GO:0008375: acetylglucosaminyltransferase activity4.91E-02
127GO:0009931: calcium-dependent protein serine/threonine kinase activity4.91E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast8.16E-23
2GO:0009535: chloroplast thylakoid membrane2.14E-17
3GO:0048046: apoplast6.04E-17
4GO:0009941: chloroplast envelope1.20E-14
5GO:0009570: chloroplast stroma2.54E-11
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.70E-09
7GO:0046658: anchored component of plasma membrane6.32E-09
8GO:0009579: thylakoid1.02E-08
9GO:0031225: anchored component of membrane4.86E-08
10GO:0009534: chloroplast thylakoid9.55E-07
11GO:0009543: chloroplast thylakoid lumen2.11E-06
12GO:0010319: stromule3.68E-06
13GO:0005618: cell wall1.46E-05
14GO:0031977: thylakoid lumen2.72E-05
15GO:0009505: plant-type cell wall2.77E-05
16GO:0009706: chloroplast inner membrane1.39E-04
17GO:0010287: plastoglobule1.97E-04
18GO:0005576: extracellular region2.21E-04
19GO:0009782: photosystem I antenna complex3.47E-04
20GO:0009923: fatty acid elongase complex3.47E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex7.56E-04
22GO:0042170: plastid membrane7.56E-04
23GO:0005840: ribosome9.12E-04
24GO:0005853: eukaryotic translation elongation factor 1 complex1.22E-03
25GO:0030076: light-harvesting complex1.43E-03
26GO:0016020: membrane1.58E-03
27GO:0000139: Golgi membrane1.68E-03
28GO:0009654: photosystem II oxygen evolving complex1.94E-03
29GO:0042651: thylakoid membrane1.94E-03
30GO:0031897: Tic complex2.37E-03
31GO:0016021: integral component of membrane2.49E-03
32GO:0005794: Golgi apparatus3.33E-03
33GO:0009523: photosystem II4.02E-03
34GO:0005886: plasma membrane5.11E-03
35GO:0009533: chloroplast stromal thylakoid5.32E-03
36GO:0009539: photosystem II reaction center7.08E-03
37GO:0005811: lipid particle7.08E-03
38GO:0045298: tubulin complex8.04E-03
39GO:0005763: mitochondrial small ribosomal subunit8.04E-03
40GO:0016324: apical plasma membrane1.01E-02
41GO:0009506: plasmodesma1.04E-02
42GO:0009536: plastid1.18E-02
43GO:0030095: chloroplast photosystem II1.46E-02
44GO:0005875: microtubule associated complex1.71E-02
45GO:0031969: chloroplast membrane2.24E-02
46GO:0009522: photosystem I3.17E-02
47GO:0019898: extrinsic component of membrane3.33E-02
48GO:0005773: vacuole3.91E-02
49GO:0005802: trans-Golgi network4.65E-02
50GO:0005615: extracellular space4.95E-02
Gene type



Gene DE type