Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G38140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0090071: negative regulation of ribosome biogenesis0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0015805: S-adenosyl-L-methionine transport0.00E+00
8GO:0042493: response to drug0.00E+00
9GO:0042371: vitamin K biosynthetic process0.00E+00
10GO:1905499: trichome papilla formation0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0006412: translation1.07E-14
14GO:0015995: chlorophyll biosynthetic process3.56E-10
15GO:0042254: ribosome biogenesis1.30E-09
16GO:0015979: photosynthesis9.86E-08
17GO:0032544: plastid translation2.68E-07
18GO:0009735: response to cytokinin3.35E-07
19GO:0010196: nonphotochemical quenching8.43E-06
20GO:0090391: granum assembly2.08E-05
21GO:0042335: cuticle development2.70E-05
22GO:0009658: chloroplast organization3.01E-05
23GO:0006779: porphyrin-containing compound biosynthetic process3.33E-05
24GO:0006782: protoporphyrinogen IX biosynthetic process4.32E-05
25GO:0009773: photosynthetic electron transport in photosystem I5.49E-05
26GO:0010027: thylakoid membrane organization9.68E-05
27GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.77E-04
28GO:0009772: photosynthetic electron transport in photosystem II3.19E-04
29GO:0043489: RNA stabilization3.63E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process3.63E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.63E-04
32GO:0042759: long-chain fatty acid biosynthetic process3.63E-04
33GO:0071588: hydrogen peroxide mediated signaling pathway3.63E-04
34GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.63E-04
35GO:0060627: regulation of vesicle-mediated transport3.63E-04
36GO:0000413: protein peptidyl-prolyl isomerization3.84E-04
37GO:0006353: DNA-templated transcription, termination4.01E-04
38GO:0009451: RNA modification4.74E-04
39GO:0006869: lipid transport5.73E-04
40GO:0009828: plant-type cell wall loosening7.11E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process7.89E-04
42GO:0034755: iron ion transmembrane transport7.89E-04
43GO:0001736: establishment of planar polarity7.89E-04
44GO:0006568: tryptophan metabolic process7.89E-04
45GO:0006949: syncytium formation8.10E-04
46GO:0006013: mannose metabolic process1.28E-03
47GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.28E-03
48GO:0010207: photosystem II assembly1.36E-03
49GO:0010025: wax biosynthetic process1.69E-03
50GO:0006241: CTP biosynthetic process1.84E-03
51GO:0019048: modulation by virus of host morphology or physiology1.84E-03
52GO:0009650: UV protection1.84E-03
53GO:0006165: nucleoside diphosphate phosphorylation1.84E-03
54GO:0006424: glutamyl-tRNA aminoacylation1.84E-03
55GO:0046739: transport of virus in multicellular host1.84E-03
56GO:1901332: negative regulation of lateral root development1.84E-03
57GO:0006228: UTP biosynthetic process1.84E-03
58GO:0031048: chromatin silencing by small RNA1.84E-03
59GO:0010088: phloem development1.84E-03
60GO:0006986: response to unfolded protein1.84E-03
61GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.84E-03
62GO:2001141: regulation of RNA biosynthetic process1.84E-03
63GO:0051085: chaperone mediated protein folding requiring cofactor1.84E-03
64GO:0010239: chloroplast mRNA processing1.84E-03
65GO:0045454: cell redox homeostasis1.97E-03
66GO:0006183: GTP biosynthetic process2.47E-03
67GO:0051567: histone H3-K9 methylation2.47E-03
68GO:0009956: radial pattern formation2.47E-03
69GO:0009411: response to UV2.71E-03
70GO:0042742: defense response to bacterium2.98E-03
71GO:0009664: plant-type cell wall organization3.08E-03
72GO:0048359: mucilage metabolic process involved in seed coat development3.16E-03
73GO:0032543: mitochondrial translation3.16E-03
74GO:0006564: L-serine biosynthetic process3.16E-03
75GO:0010236: plastoquinone biosynthetic process3.16E-03
76GO:0045038: protein import into chloroplast thylakoid membrane3.16E-03
77GO:0031365: N-terminal protein amino acid modification3.16E-03
78GO:0006665: sphingolipid metabolic process3.16E-03
79GO:0006457: protein folding3.76E-03
80GO:0032973: amino acid export3.91E-03
81GO:0016458: gene silencing3.91E-03
82GO:0006014: D-ribose metabolic process3.91E-03
83GO:0042549: photosystem II stabilization3.91E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.91E-03
85GO:0000470: maturation of LSU-rRNA3.91E-03
86GO:0009826: unidimensional cell growth4.11E-03
87GO:0042372: phylloquinone biosynthetic process4.71E-03
88GO:0017148: negative regulation of translation4.71E-03
89GO:0006694: steroid biosynthetic process4.71E-03
90GO:1901259: chloroplast rRNA processing4.71E-03
91GO:0010019: chloroplast-nucleus signaling pathway4.71E-03
92GO:0010555: response to mannitol4.71E-03
93GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.56E-03
94GO:0043090: amino acid import5.56E-03
95GO:0030091: protein repair6.46E-03
96GO:0009642: response to light intensity6.46E-03
97GO:0042255: ribosome assembly6.46E-03
98GO:0006605: protein targeting6.46E-03
99GO:0000028: ribosomal small subunit assembly6.46E-03
100GO:0048564: photosystem I assembly6.46E-03
101GO:0045292: mRNA cis splicing, via spliceosome6.46E-03
102GO:0010497: plasmodesmata-mediated intercellular transport7.41E-03
103GO:0006526: arginine biosynthetic process7.41E-03
104GO:0009808: lignin metabolic process7.41E-03
105GO:0071482: cellular response to light stimulus7.41E-03
106GO:0080144: amino acid homeostasis8.41E-03
107GO:0006783: heme biosynthetic process8.41E-03
108GO:0000373: Group II intron splicing8.41E-03
109GO:0015780: nucleotide-sugar transport8.41E-03
110GO:0010311: lateral root formation9.14E-03
111GO:0042761: very long-chain fatty acid biosynthetic process9.46E-03
112GO:0009631: cold acclimation1.01E-02
113GO:0007568: aging1.01E-02
114GO:0016042: lipid catabolic process1.05E-02
115GO:0030422: production of siRNA involved in RNA interference1.05E-02
116GO:0048829: root cap development1.05E-02
117GO:0045490: pectin catabolic process1.06E-02
118GO:0034599: cellular response to oxidative stress1.16E-02
119GO:0009073: aromatic amino acid family biosynthetic process1.17E-02
120GO:0043085: positive regulation of catalytic activity1.17E-02
121GO:0006879: cellular iron ion homeostasis1.17E-02
122GO:0006352: DNA-templated transcription, initiation1.17E-02
123GO:0048765: root hair cell differentiation1.17E-02
124GO:0010015: root morphogenesis1.17E-02
125GO:0030001: metal ion transport1.26E-02
126GO:0016024: CDP-diacylglycerol biosynthetic process1.29E-02
127GO:2000012: regulation of auxin polar transport1.41E-02
128GO:0010102: lateral root morphogenesis1.41E-02
129GO:0006006: glucose metabolic process1.41E-02
130GO:0010114: response to red light1.43E-02
131GO:0010143: cutin biosynthetic process1.53E-02
132GO:0009933: meristem structural organization1.53E-02
133GO:0019253: reductive pentose-phosphate cycle1.53E-02
134GO:0000027: ribosomal large subunit assembly1.93E-02
135GO:0006813: potassium ion transport1.93E-02
136GO:0051017: actin filament bundle assembly1.93E-02
137GO:0019344: cysteine biosynthetic process1.93E-02
138GO:0006418: tRNA aminoacylation for protein translation2.07E-02
139GO:0061077: chaperone-mediated protein folding2.22E-02
140GO:0006306: DNA methylation2.22E-02
141GO:0003333: amino acid transmembrane transport2.22E-02
142GO:0030245: cellulose catabolic process2.37E-02
143GO:0010091: trichome branching2.67E-02
144GO:0019722: calcium-mediated signaling2.67E-02
145GO:0009306: protein secretion2.67E-02
146GO:0009624: response to nematode2.75E-02
147GO:0080022: primary root development2.99E-02
148GO:0008033: tRNA processing2.99E-02
149GO:0009958: positive gravitropism3.16E-02
150GO:0006520: cellular amino acid metabolic process3.16E-02
151GO:0010305: leaf vascular tissue pattern formation3.16E-02
152GO:0006662: glycerol ether metabolic process3.16E-02
153GO:0006342: chromatin silencing3.16E-02
154GO:0015986: ATP synthesis coupled proton transport3.32E-02
155GO:0019252: starch biosynthetic process3.49E-02
156GO:0000302: response to reactive oxygen species3.67E-02
157GO:0002229: defense response to oomycetes3.67E-02
158GO:0016132: brassinosteroid biosynthetic process3.67E-02
159GO:0032502: developmental process3.84E-02
160GO:0009790: embryo development4.01E-02
161GO:0009409: response to cold4.32E-02
162GO:0071805: potassium ion transmembrane transport4.39E-02
163GO:0007267: cell-cell signaling4.39E-02
164GO:0051607: defense response to virus4.57E-02
165GO:0055114: oxidation-reduction process4.77E-02
166GO:0009816: defense response to bacterium, incompatible interaction4.95E-02
RankGO TermAdjusted P value
1GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
2GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
7GO:0047661: amino-acid racemase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
10GO:0005048: signal sequence binding0.00E+00
11GO:0050614: delta24-sterol reductase activity0.00E+00
12GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
13GO:0019843: rRNA binding6.89E-24
14GO:0003735: structural constituent of ribosome1.39E-16
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.02E-11
16GO:0005528: FK506 binding1.72E-07
17GO:0016851: magnesium chelatase activity2.44E-07
18GO:0051920: peroxiredoxin activity5.29E-06
19GO:0016209: antioxidant activity1.27E-05
20GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.08E-05
21GO:0043023: ribosomal large subunit binding4.58E-05
22GO:0016788: hydrolase activity, acting on ester bonds2.12E-04
23GO:0030570: pectate lyase activity2.77E-04
24GO:0004655: porphobilinogen synthase activity3.63E-04
25GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.63E-04
26GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.63E-04
27GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.63E-04
28GO:0004425: indole-3-glycerol-phosphate synthase activity3.63E-04
29GO:0016630: protochlorophyllide reductase activity7.89E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.89E-04
31GO:0004617: phosphoglycerate dehydrogenase activity7.89E-04
32GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.89E-04
33GO:0002161: aminoacyl-tRNA editing activity1.28E-03
34GO:0030267: glyoxylate reductase (NADP) activity1.28E-03
35GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.28E-03
36GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.28E-03
37GO:0008266: poly(U) RNA binding1.36E-03
38GO:0008289: lipid binding1.39E-03
39GO:0035197: siRNA binding1.84E-03
40GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.84E-03
41GO:0004550: nucleoside diphosphate kinase activity1.84E-03
42GO:0008097: 5S rRNA binding1.84E-03
43GO:0001872: (1->3)-beta-D-glucan binding1.84E-03
44GO:0016987: sigma factor activity2.47E-03
45GO:0010328: auxin influx transmembrane transporter activity2.47E-03
46GO:0043495: protein anchor2.47E-03
47GO:0004659: prenyltransferase activity2.47E-03
48GO:0001053: plastid sigma factor activity2.47E-03
49GO:0010011: auxin binding2.47E-03
50GO:0051287: NAD binding2.94E-03
51GO:0009922: fatty acid elongase activity3.16E-03
52GO:0003959: NADPH dehydrogenase activity3.16E-03
53GO:0016773: phosphotransferase activity, alcohol group as acceptor3.16E-03
54GO:0004040: amidase activity3.16E-03
55GO:0004130: cytochrome-c peroxidase activity3.91E-03
56GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.91E-03
57GO:0016688: L-ascorbate peroxidase activity3.91E-03
58GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.91E-03
59GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.71E-03
60GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.71E-03
61GO:0004747: ribokinase activity4.71E-03
62GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.71E-03
63GO:0004559: alpha-mannosidase activity4.71E-03
64GO:0003723: RNA binding5.41E-03
65GO:0019899: enzyme binding5.56E-03
66GO:0016831: carboxy-lyase activity5.56E-03
67GO:0008235: metalloexopeptidase activity5.56E-03
68GO:0052747: sinapyl alcohol dehydrogenase activity6.46E-03
69GO:0004033: aldo-keto reductase (NADP) activity6.46E-03
70GO:0008865: fructokinase activity6.46E-03
71GO:0008312: 7S RNA binding6.46E-03
72GO:0052689: carboxylic ester hydrolase activity7.04E-03
73GO:0016829: lyase activity7.79E-03
74GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.41E-03
75GO:0005381: iron ion transmembrane transporter activity9.46E-03
76GO:0047617: acyl-CoA hydrolase activity9.46E-03
77GO:0008047: enzyme activator activity1.05E-02
78GO:0004177: aminopeptidase activity1.17E-02
79GO:0004519: endonuclease activity1.24E-02
80GO:0000049: tRNA binding1.29E-02
81GO:0045551: cinnamyl-alcohol dehydrogenase activity1.29E-02
82GO:0004521: endoribonuclease activity1.29E-02
83GO:0008081: phosphoric diester hydrolase activity1.41E-02
84GO:0031072: heat shock protein binding1.41E-02
85GO:0043621: protein self-association1.55E-02
86GO:0004601: peroxidase activity1.85E-02
87GO:0015079: potassium ion transmembrane transporter activity2.07E-02
88GO:0008324: cation transmembrane transporter activity2.07E-02
89GO:0051087: chaperone binding2.07E-02
90GO:0015171: amino acid transmembrane transporter activity2.14E-02
91GO:0008810: cellulase activity2.52E-02
92GO:0022891: substrate-specific transmembrane transporter activity2.52E-02
93GO:0003727: single-stranded RNA binding2.67E-02
94GO:0008514: organic anion transmembrane transporter activity2.67E-02
95GO:0051082: unfolded protein binding2.75E-02
96GO:0047134: protein-disulfide reductase activity2.83E-02
97GO:0004812: aminoacyl-tRNA ligase activity2.83E-02
98GO:0008080: N-acetyltransferase activity3.16E-02
99GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.16E-02
100GO:0004791: thioredoxin-disulfide reductase activity3.32E-02
101GO:0004518: nuclease activity3.84E-02
102GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.87E-02
103GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.02E-02
104GO:0051015: actin filament binding4.02E-02
105GO:0016491: oxidoreductase activity4.13E-02
106GO:0016791: phosphatase activity4.20E-02
107GO:0005507: copper ion binding4.31E-02
108GO:0008483: transaminase activity4.39E-02
109GO:0016597: amino acid binding4.57E-02
110GO:0016168: chlorophyll binding4.95E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009547: plastid ribosome0.00E+00
5GO:0009507: chloroplast3.02E-55
6GO:0009570: chloroplast stroma6.98E-50
7GO:0009941: chloroplast envelope3.21E-32
8GO:0009579: thylakoid1.01E-22
9GO:0009535: chloroplast thylakoid membrane4.06E-18
10GO:0005840: ribosome2.90E-16
11GO:0009543: chloroplast thylakoid lumen7.51E-16
12GO:0009534: chloroplast thylakoid4.07E-15
13GO:0031977: thylakoid lumen2.90E-12
14GO:0010007: magnesium chelatase complex5.06E-08
15GO:0046658: anchored component of plasma membrane1.77E-06
16GO:0048046: apoplast5.20E-05
17GO:0000311: plastid large ribosomal subunit6.82E-05
18GO:0016020: membrane3.29E-04
19GO:0009923: fatty acid elongase complex3.63E-04
20GO:0031225: anchored component of membrane5.07E-04
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.89E-04
22GO:0010319: stromule7.68E-04
23GO:0080085: signal recognition particle, chloroplast targeting7.89E-04
24GO:0000312: plastid small ribosomal subunit1.36E-03
25GO:0009505: plant-type cell wall1.63E-03
26GO:0005719: nuclear euchromatin1.84E-03
27GO:0042651: thylakoid membrane2.07E-03
28GO:0009654: photosystem II oxygen evolving complex2.07E-03
29GO:0000793: condensed chromosome3.91E-03
30GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.91E-03
31GO:0005618: cell wall4.23E-03
32GO:0009523: photosystem II4.30E-03
33GO:0019898: extrinsic component of membrane4.30E-03
34GO:0009986: cell surface5.56E-03
35GO:0000794: condensed nuclear chromosome5.56E-03
36GO:0009533: chloroplast stromal thylakoid5.56E-03
37GO:0031969: chloroplast membrane6.05E-03
38GO:0022625: cytosolic large ribosomal subunit6.53E-03
39GO:0030529: intracellular ribonucleoprotein complex6.65E-03
40GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.41E-03
41GO:0015030: Cajal body9.46E-03
42GO:0015934: large ribosomal subunit1.01E-02
43GO:0090404: pollen tube tip1.17E-02
44GO:0005886: plasma membrane1.21E-02
45GO:0030095: chloroplast photosystem II1.53E-02
46GO:0005875: microtubule associated complex1.80E-02
47GO:0015935: small ribosomal subunit2.22E-02
48GO:0022626: cytosolic ribosome2.42E-02
49GO:0015629: actin cytoskeleton2.52E-02
50GO:0010287: plastoglobule3.26E-02
51GO:0009536: plastid3.68E-02
52GO:0009295: nucleoid4.39E-02
53GO:0043231: intracellular membrane-bounded organelle4.44E-02
54GO:0009506: plasmodesma4.81E-02
Gene type



Gene DE type