co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G37790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0019510: S-adenosylhomocysteine catabolic process	7.58E-05
5	GO:0016031: tRNA import into mitochondrion	7.58E-05
6	GO:0018119: peptidyl-cysteine S-nitrosylation	1.01E-04
7	GO:0010020: chloroplast fission	1.55E-04
8	GO:0019253: reductive pentose-phosphate cycle	1.55E-04
9	GO:0033353: S-adenosylmethionine cycle	1.81E-04
10	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.81E-04
11	GO:2000123: positive regulation of stomatal complex development	1.81E-04
12	GO:0006065: UDP-glucuronate biosynthetic process	3.05E-04
13	GO:0090506: axillary shoot meristem initiation	3.05E-04
14	GO:0006000: fructose metabolic process	3.05E-04
15	GO:0043572: plastid fission	4.41E-04
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.41E-04
17	GO:0007231: osmosensory signaling pathway	4.41E-04
18	GO:0042742: defense response to bacterium	5.51E-04
19	GO:0033500: carbohydrate homeostasis	5.87E-04
20	GO:2000038: regulation of stomatal complex development	5.87E-04
21	GO:0006546: glycine catabolic process	5.87E-04
22	GO:0009765: photosynthesis, light harvesting	5.87E-04
23	GO:0045727: positive regulation of translation	5.87E-04
24	GO:0016123: xanthophyll biosynthetic process	7.44E-04
25	GO:0010375: stomatal complex patterning	7.44E-04
26	GO:0016120: carotene biosynthetic process	7.44E-04
27	GO:0006796: phosphate-containing compound metabolic process	9.07E-04
28	GO:0010190: cytochrome b6f complex assembly	9.07E-04
29	GO:0033365: protein localization to organelle	9.07E-04
30	GO:0009117: nucleotide metabolic process	9.07E-04
31	GO:0016554: cytidine to uridine editing	9.07E-04
32	GO:0006810: transport	1.08E-03
33	GO:0010555: response to mannitol	1.08E-03
34	GO:0010067: procambium histogenesis	1.08E-03
35	GO:0009658: chloroplast organization	1.14E-03
36	GO:0046686: response to cadmium ion	1.19E-03
37	GO:0016051: carbohydrate biosynthetic process	1.25E-03
38	GO:0009819: drought recovery	1.46E-03
39	GO:0009642: response to light intensity	1.46E-03
40	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.55E-03
41	GO:0032544: plastid translation	1.66E-03
42	GO:0006002: fructose 6-phosphate metabolic process	1.66E-03
43	GO:0045454: cell redox homeostasis	1.86E-03
44	GO:0010206: photosystem II repair	1.87E-03
45	GO:0048589: developmental growth	1.87E-03
46	GO:1900865: chloroplast RNA modification	2.09E-03
47	GO:0055114: oxidation-reduction process	2.29E-03
48	GO:0043069: negative regulation of programmed cell death	2.32E-03
49	GO:0000272: polysaccharide catabolic process	2.56E-03
50	GO:0006816: calcium ion transport	2.56E-03
51	GO:0009773: photosynthetic electron transport in photosystem I	2.56E-03
52	GO:0050826: response to freezing	3.06E-03
53	GO:0009725: response to hormone	3.06E-03
54	GO:0006094: gluconeogenesis	3.06E-03
55	GO:0009767: photosynthetic electron transport chain	3.06E-03
56	GO:0005986: sucrose biosynthetic process	3.06E-03
57	GO:0010207: photosystem II assembly	3.32E-03
58	GO:0010223: secondary shoot formation	3.32E-03
59	GO:0070588: calcium ion transmembrane transport	3.59E-03
60	GO:0006508: proteolysis	3.92E-03
61	GO:0019344: cysteine biosynthetic process	4.15E-03
62	GO:0007010: cytoskeleton organization	4.15E-03
63	GO:0007017: microtubule-based process	4.43E-03
64	GO:0009735: response to cytokinin	4.47E-03
65	GO:0061077: chaperone-mediated protein folding	4.73E-03
66	GO:0005975: carbohydrate metabolic process	4.98E-03
67	GO:0007005: mitochondrion organization	5.03E-03
68	GO:0019748: secondary metabolic process	5.03E-03
69	GO:0006730: one-carbon metabolic process	5.03E-03
70	GO:0009294: DNA mediated transformation	5.34E-03
71	GO:0001944: vasculature development	5.34E-03
72	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.34E-03
73	GO:0010089: xylem development	5.66E-03
74	GO:0016117: carotenoid biosynthetic process	5.98E-03
75	GO:0000271: polysaccharide biosynthetic process	6.31E-03
76	GO:0000413: protein peptidyl-prolyl isomerization	6.31E-03
77	GO:0010087: phloem or xylem histogenesis	6.31E-03
78	GO:0042631: cellular response to water deprivation	6.31E-03
79	GO:0045489: pectin biosynthetic process	6.64E-03
80	GO:0019252: starch biosynthetic process	7.34E-03
81	GO:0071554: cell wall organization or biogenesis	7.69E-03
82	GO:0009828: plant-type cell wall loosening	8.79E-03
83	GO:0007267: cell-cell signaling	9.17E-03
84	GO:0016126: sterol biosynthetic process	9.95E-03
85	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.03E-02
86	GO:0015979: photosynthesis	1.14E-02
87	GO:0009817: defense response to fungus, incompatible interaction	1.20E-02
88	GO:0048767: root hair elongation	1.24E-02
89	GO:0006631: fatty acid metabolic process	1.60E-02
90	GO:0008152: metabolic process	1.63E-02
91	GO:0009651: response to salt stress	1.65E-02
92	GO:0009744: response to sucrose	1.70E-02
93	GO:0009664: plant-type cell wall organization	1.99E-02
94	GO:0006364: rRNA processing	2.10E-02
95	GO:0051603: proteolysis involved in cellular protein catabolic process	2.15E-02
96	GO:0006096: glycolytic process	2.36E-02
97	GO:0009742: brassinosteroid mediated signaling pathway	2.81E-02
98	GO:0006633: fatty acid biosynthetic process	3.72E-02
99	GO:0006413: translational initiation	3.78E-02
100	GO:0007623: circadian rhythm	3.98E-02
101	GO:0009617: response to bacterium	4.51E-02
102	GO:0010468: regulation of gene expression	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0051920: peroxiredoxin activity	2.05E-05
5	GO:0016209: antioxidant activity	3.68E-05
6	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	7.58E-05
7	GO:0004013: adenosylhomocysteinase activity	7.58E-05
8	GO:0080132: fatty acid alpha-hydroxylase activity	7.58E-05
9	GO:0004618: phosphoglycerate kinase activity	1.81E-04
10	GO:0010297: heteropolysaccharide binding	1.81E-04
11	GO:0004047: aminomethyltransferase activity	1.81E-04
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.81E-04
13	GO:0008967: phosphoglycolate phosphatase activity	1.81E-04
14	GO:0003979: UDP-glucose 6-dehydrogenase activity	3.05E-04
15	GO:0004148: dihydrolipoyl dehydrogenase activity	3.05E-04
16	GO:0035529: NADH pyrophosphatase activity	4.41E-04
17	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	4.41E-04
18	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.87E-04
19	GO:1990137: plant seed peroxidase activity	5.87E-04
20	GO:0005200: structural constituent of cytoskeleton	6.95E-04
21	GO:0030414: peptidase inhibitor activity	7.44E-04
22	GO:0016462: pyrophosphatase activity	9.07E-04
23	GO:0080030: methyl indole-3-acetate esterase activity	9.07E-04
24	GO:0042578: phosphoric ester hydrolase activity	9.07E-04
25	GO:0051753: mannan synthase activity	1.08E-03
26	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.08E-03
27	GO:0004427: inorganic diphosphatase activity	1.26E-03
28	GO:0004185: serine-type carboxypeptidase activity	1.60E-03
29	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.86E-03
30	GO:0051287: NAD binding	1.93E-03
31	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.61E-03
32	GO:0003824: catalytic activity	3.04E-03
33	GO:0005262: calcium channel activity	3.06E-03
34	GO:0004565: beta-galactosidase activity	3.06E-03
35	GO:0015266: protein channel activity	3.06E-03
36	GO:0016758: transferase activity, transferring hexosyl groups	3.69E-03
37	GO:0005528: FK506 binding	4.15E-03
38	GO:0004176: ATP-dependent peptidase activity	4.73E-03
39	GO:0033612: receptor serine/threonine kinase binding	4.73E-03
40	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.03E-03
41	GO:0005102: receptor binding	5.98E-03
42	GO:0050662: coenzyme binding	6.99E-03
43	GO:0004872: receptor activity	7.34E-03
44	GO:0019901: protein kinase binding	7.34E-03
45	GO:0048038: quinone binding	7.69E-03
46	GO:0005507: copper ion binding	7.83E-03
47	GO:0004601: peroxidase activity	8.06E-03
48	GO:0008483: transaminase activity	9.17E-03
49	GO:0008237: metallopeptidase activity	9.17E-03
50	GO:0016413: O-acetyltransferase activity	9.56E-03
51	GO:0005509: calcium ion binding	1.11E-02
52	GO:0008236: serine-type peptidase activity	1.16E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.20E-02
54	GO:0004222: metalloendopeptidase activity	1.28E-02
55	GO:0050897: cobalt ion binding	1.33E-02
56	GO:0003924: GTPase activity	1.48E-02
57	GO:0016757: transferase activity, transferring glycosyl groups	1.68E-02
58	GO:0016491: oxidoreductase activity	1.74E-02
59	GO:0043621: protein self-association	1.79E-02
60	GO:0005198: structural molecule activity	1.84E-02
61	GO:0004650: polygalacturonase activity	2.53E-02
62	GO:0019843: rRNA binding	3.16E-02
63	GO:0016787: hydrolase activity	3.19E-02
64	GO:0016740: transferase activity	3.21E-02
65	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.22E-02
66	GO:0004252: serine-type endopeptidase activity	3.41E-02
67	GO:0030246: carbohydrate binding	3.54E-02
68	GO:0008194: UDP-glycosyltransferase activity	4.31E-02
69	GO:0005525: GTP binding	4.31E-02
70	GO:0003743: translation initiation factor activity	4.44E-02
71	GO:0042802: identical protein binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	1.27E-10
3	GO:0009579: thylakoid	2.64E-10
4	GO:0009543: chloroplast thylakoid lumen	1.02E-09
5	GO:0009570: chloroplast stroma	3.03E-09
6	GO:0009535: chloroplast thylakoid membrane	1.21E-08
7	GO:0009941: chloroplast envelope	4.99E-08
8	GO:0048046: apoplast	1.41E-06
9	GO:0031977: thylakoid lumen	4.79E-06
10	GO:0009654: photosystem II oxygen evolving complex	6.09E-06
11	GO:0009534: chloroplast thylakoid	2.50E-05
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.84E-05
13	GO:0009344: nitrite reductase complex [NAD(P)H]	7.58E-05
14	GO:0030095: chloroplast photosystem II	1.55E-04
15	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.81E-04
16	GO:0005773: vacuole	2.25E-04
17	GO:0019898: extrinsic component of membrane	5.10E-04
18	GO:0010168: ER body	9.07E-04
19	GO:0009533: chloroplast stromal thylakoid	1.26E-03
20	GO:0009539: photosystem II reaction center	1.66E-03
21	GO:0005811: lipid particle	1.66E-03
22	GO:0005618: cell wall	1.68E-03
23	GO:0045298: tubulin complex	1.87E-03
24	GO:0005576: extracellular region	1.95E-03
25	GO:0030176: integral component of endoplasmic reticulum membrane	3.59E-03
26	GO:0010287: plastoglobule	3.59E-03
27	GO:0009536: plastid	3.60E-03
28	GO:0042651: thylakoid membrane	4.43E-03
29	GO:0009532: plastid stroma	4.73E-03
30	GO:0005744: mitochondrial inner membrane presequence translocase complex	5.66E-03
31	GO:0005615: extracellular space	5.83E-03
32	GO:0010319: stromule	9.17E-03
33	GO:0005874: microtubule	9.66E-03
34	GO:0000325: plant-type vacuole	1.33E-02
35	GO:0009505: plant-type cell wall	1.63E-02
36	GO:0005856: cytoskeleton	1.84E-02
37	GO:0005747: mitochondrial respiratory chain complex I	2.42E-02
38	GO:0022626: cytosolic ribosome	2.52E-02
39	GO:0009706: chloroplast inner membrane	2.69E-02
40	GO:0005794: Golgi apparatus	3.13E-02
41	GO:0005759: mitochondrial matrix	3.72E-02
42	GO:0031225: anchored component of membrane	4.09E-02
43	GO:0046658: anchored component of plasma membrane	4.85E-02