co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G37640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0090391: granum assembly	3.44E-06
6	GO:0015995: chlorophyll biosynthetic process	8.43E-06
7	GO:0015979: photosynthesis	1.36E-05
8	GO:0006412: translation	3.30E-05
9	GO:0042254: ribosome biogenesis	6.71E-05
10	GO:0010196: nonphotochemical quenching	7.02E-05
11	GO:0009772: photosynthetic electron transport in photosystem II	7.02E-05
12	GO:0009735: response to cytokinin	9.39E-05
13	GO:0032544: plastid translation	1.14E-04
14	GO:0043489: RNA stabilization	1.35E-04
15	GO:0042371: vitamin K biosynthetic process	1.35E-04
16	GO:0010206: photosystem II repair	1.40E-04
17	GO:0010027: thylakoid membrane organization	1.40E-04
18	GO:0045490: pectin catabolic process	2.55E-04
19	GO:0006898: receptor-mediated endocytosis	3.11E-04
20	GO:0010541: acropetal auxin transport	3.11E-04
21	GO:0001736: establishment of planar polarity	3.11E-04
22	GO:0010160: formation of animal organ boundary	5.13E-04
23	GO:0016045: detection of bacterium	5.13E-04
24	GO:0010359: regulation of anion channel activity	5.13E-04
25	GO:0080055: low-affinity nitrate transport	5.13E-04
26	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.94E-04
27	GO:0010239: chloroplast mRNA processing	7.34E-04
28	GO:0080170: hydrogen peroxide transmembrane transport	7.34E-04
29	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.34E-04
30	GO:0009650: UV protection	7.34E-04
31	GO:1901332: negative regulation of lateral root development	7.34E-04
32	GO:0051513: regulation of monopolar cell growth	7.34E-04
33	GO:0042335: cuticle development	8.75E-04
34	GO:0034220: ion transmembrane transport	8.75E-04
35	GO:0009624: response to nematode	8.92E-04
36	GO:0009958: positive gravitropism	9.40E-04
37	GO:0030104: water homeostasis	9.73E-04
38	GO:0016042: lipid catabolic process	1.21E-03
39	GO:0010438: cellular response to sulfur starvation	1.23E-03
40	GO:0010236: plastoquinone biosynthetic process	1.23E-03
41	GO:0009828: plant-type cell wall loosening	1.38E-03
42	GO:0009913: epidermal cell differentiation	1.51E-03
43	GO:0060918: auxin transport	1.51E-03
44	GO:0009759: indole glucosinolate biosynthetic process	1.51E-03
45	GO:1901259: chloroplast rRNA processing	1.81E-03
46	GO:0042372: phylloquinone biosynthetic process	1.81E-03
47	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.81E-03
48	GO:0009627: systemic acquired resistance	1.83E-03
49	GO:0009734: auxin-activated signaling pathway	2.12E-03
50	GO:0010311: lateral root formation	2.24E-03
51	GO:0006353: DNA-templated transcription, termination	2.46E-03
52	GO:0009733: response to auxin	2.72E-03
53	GO:0009658: chloroplast organization	3.06E-03
54	GO:0030001: metal ion transport	3.07E-03
55	GO:0009245: lipid A biosynthetic process	3.17E-03
56	GO:0009926: auxin polar transport	3.47E-03
57	GO:0009638: phototropism	3.55E-03
58	GO:0048829: root cap development	3.95E-03
59	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.19E-03
60	GO:0009664: plant-type cell wall organization	4.34E-03
61	GO:0009773: photosynthetic electron transport in photosystem I	4.36E-03
62	GO:0052544: defense response by callose deposition in cell wall	4.36E-03
63	GO:0048765: root hair cell differentiation	4.36E-03
64	GO:0010015: root morphogenesis	4.36E-03
65	GO:0002213: defense response to insect	4.79E-03
66	GO:0016024: CDP-diacylglycerol biosynthetic process	4.79E-03
67	GO:0008361: regulation of cell size	4.79E-03
68	GO:2000012: regulation of auxin polar transport	5.22E-03
69	GO:0010102: lateral root morphogenesis	5.22E-03
70	GO:0009785: blue light signaling pathway	5.22E-03
71	GO:0010143: cutin biosynthetic process	5.68E-03
72	GO:0010207: photosystem II assembly	5.68E-03
73	GO:0010540: basipetal auxin transport	5.68E-03
74	GO:0000162: tryptophan biosynthetic process	6.62E-03
75	GO:0006833: water transport	6.62E-03
76	GO:0051017: actin filament bundle assembly	7.11E-03
77	GO:0007017: microtubule-based process	7.62E-03
78	GO:0003333: amino acid transmembrane transport	8.14E-03
79	GO:0009411: response to UV	9.21E-03
80	GO:0048443: stamen development	9.77E-03
81	GO:0006284: base-excision repair	9.77E-03
82	GO:0080022: primary root development	1.09E-02
83	GO:0040008: regulation of growth	1.09E-02
84	GO:0009451: RNA modification	1.17E-02
85	GO:0015986: ATP synthesis coupled proton transport	1.21E-02
86	GO:0048825: cotyledon development	1.27E-02
87	GO:0009409: response to cold	1.39E-02
88	GO:0016032: viral process	1.40E-02
89	GO:0009630: gravitropism	1.40E-02
90	GO:0030163: protein catabolic process	1.46E-02
91	GO:0009639: response to red or far red light	1.53E-02
92	GO:0009826: unidimensional cell growth	1.71E-02
93	GO:0080167: response to karrikin	2.21E-02
94	GO:0010218: response to far red light	2.24E-02
95	GO:0009631: cold acclimation	2.32E-02
96	GO:0048527: lateral root development	2.32E-02
97	GO:0006865: amino acid transport	2.40E-02
98	GO:0045087: innate immune response	2.48E-02
99	GO:0009637: response to blue light	2.48E-02
100	GO:0009640: photomorphogenesis	2.97E-02
101	GO:0032259: methylation	3.12E-02
102	GO:0006281: DNA repair	3.26E-02
103	GO:0042742: defense response to bacterium	3.31E-02
104	GO:0006855: drug transmembrane transport	3.31E-02
105	GO:0009753: response to jasmonic acid	3.49E-02
106	GO:0051603: proteolysis involved in cellular protein catabolic process	3.76E-02
107	GO:0006857: oligopeptide transport	3.85E-02
108	GO:0009740: gibberellic acid mediated signaling pathway	4.52E-02
109	GO:0042545: cell wall modification	4.62E-02
110	GO:0006508: proteolysis	4.64E-02
111	GO:0006396: RNA processing	4.81E-02
112	GO:0009742: brassinosteroid mediated signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0019843: rRNA binding	1.83E-08
4	GO:0016851: magnesium chelatase activity	1.85E-08
5	GO:0005528: FK506 binding	3.25E-07
6	GO:0003735: structural constituent of ribosome	4.14E-07
7	GO:0030570: pectate lyase activity	3.54E-05
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.89E-05
9	GO:0016829: lyase activity	1.69E-04
10	GO:0080054: low-affinity nitrate transmembrane transporter activity	5.13E-04
11	GO:0016788: hydrolase activity, acting on ester bonds	5.24E-04
12	GO:0052689: carboxylic ester hydrolase activity	8.22E-04
13	GO:0010328: auxin influx transmembrane transporter activity	9.73E-04
14	GO:0004659: prenyltransferase activity	9.73E-04
15	GO:0010011: auxin binding	9.73E-04
16	GO:0008725: DNA-3-methyladenine glycosylase activity	1.23E-03
17	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.51E-03
18	GO:0031177: phosphopantetheine binding	1.51E-03
19	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.51E-03
20	GO:0015250: water channel activity	1.64E-03
21	GO:0016832: aldehyde-lyase activity	1.81E-03
22	GO:0000035: acyl binding	1.81E-03
23	GO:0008236: serine-type peptidase activity	2.03E-03
24	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.46E-03
25	GO:0010329: auxin efflux transmembrane transporter activity	5.22E-03
26	GO:0031072: heat shock protein binding	5.22E-03
27	GO:0008266: poly(U) RNA binding	5.68E-03
28	GO:0004650: polygalacturonase activity	6.05E-03
29	GO:0004252: serine-type endopeptidase activity	9.20E-03
30	GO:0003756: protein disulfide isomerase activity	9.77E-03
31	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.07E-02
32	GO:0008080: N-acetyltransferase activity	1.15E-02
33	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.15E-02
34	GO:0004518: nuclease activity	1.40E-02
35	GO:0051015: actin filament binding	1.46E-02
36	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.46E-02
37	GO:0016791: phosphatase activity	1.53E-02
38	GO:0005200: structural constituent of cytoskeleton	1.60E-02
39	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.32E-02
40	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.64E-02
41	GO:0004185: serine-type carboxypeptidase activity	2.97E-02
42	GO:0043621: protein self-association	3.14E-02
43	GO:0015293: symporter activity	3.23E-02
44	GO:0015171: amino acid transmembrane transporter activity	3.95E-02
45	GO:0045330: aspartyl esterase activity	3.95E-02
46	GO:0030599: pectinesterase activity	4.52E-02
47	GO:0016491: oxidoreductase activity	4.64E-02
48	GO:0051082: unfolded protein binding	4.71E-02
49	GO:0016746: transferase activity, transferring acyl groups	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009570: chloroplast stroma	3.95E-18
4	GO:0009941: chloroplast envelope	5.83E-14
5	GO:0009507: chloroplast	1.44E-13
6	GO:0009579: thylakoid	2.27E-12
7	GO:0009534: chloroplast thylakoid	2.42E-12
8	GO:0009543: chloroplast thylakoid lumen	5.55E-10
9	GO:0009535: chloroplast thylakoid membrane	6.75E-10
10	GO:0010007: magnesium chelatase complex	3.78E-09
11	GO:0031977: thylakoid lumen	2.41E-08
12	GO:0005840: ribosome	2.03E-07
13	GO:0005618: cell wall	5.63E-05
14	GO:0043674: columella	1.35E-04
15	GO:0005576: extracellular region	3.94E-04
16	GO:0016020: membrane	4.48E-04
17	GO:0015630: microtubule cytoskeleton	7.34E-04
18	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.51E-03
19	GO:0009533: chloroplast stromal thylakoid	2.12E-03
20	GO:0042807: central vacuole	2.12E-03
21	GO:0009986: cell surface	2.12E-03
22	GO:0008180: COP9 signalosome	3.17E-03
23	GO:0009505: plant-type cell wall	3.30E-03
24	GO:0090404: pollen tube tip	4.36E-03
25	GO:0030095: chloroplast photosystem II	5.68E-03
26	GO:0000312: plastid small ribosomal subunit	5.68E-03
27	GO:0009654: photosystem II oxygen evolving complex	7.62E-03
28	GO:0015629: actin cytoskeleton	9.21E-03
29	GO:0009523: photosystem II	1.27E-02
30	GO:0019898: extrinsic component of membrane	1.27E-02
31	GO:0009295: nucleoid	1.60E-02
32	GO:0010319: stromule	1.60E-02
33	GO:0030529: intracellular ribonucleoprotein complex	1.73E-02
34	GO:0019005: SCF ubiquitin ligase complex	2.09E-02
35	GO:0031969: chloroplast membrane	2.21E-02
36	GO:0015934: large ribosomal subunit	2.32E-02
37	GO:0005886: plasma membrane	2.42E-02
38	GO:0005768: endosome	2.90E-02
39	GO:0005856: cytoskeleton	3.23E-02
40	GO:0000502: proteasome complex	3.67E-02
41	GO:0010008: endosome membrane	4.23E-02
42	GO:0005887: integral component of plasma membrane	4.41E-02
43	GO:0009706: chloroplast inner membrane	4.71E-02