co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:2001294: malonyl-CoA catabolic process	0.00E+00
4	GO:0042820: vitamin B6 catabolic process	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	5.35E-10
6	GO:0015979: photosynthesis	3.72E-09
7	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.15E-06
8	GO:0006810: transport	1.22E-05
9	GO:0009658: chloroplast organization	8.01E-05
10	GO:0032544: plastid translation	1.27E-04
11	GO:0051775: response to redox state	1.46E-04
12	GO:0051180: vitamin transport	1.46E-04
13	GO:0009443: pyridoxal 5'-phosphate salvage	1.46E-04
14	GO:0071277: cellular response to calcium ion	1.46E-04
15	GO:0030974: thiamine pyrophosphate transport	1.46E-04
16	GO:0033481: galacturonate biosynthetic process	1.46E-04
17	GO:0043686: co-translational protein modification	1.46E-04
18	GO:1902458: positive regulation of stomatal opening	1.46E-04
19	GO:0071588: hydrogen peroxide mediated signaling pathway	1.46E-04
20	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.46E-04
21	GO:0010206: photosystem II repair	1.56E-04
22	GO:0015893: drug transport	3.33E-04
23	GO:0010115: regulation of abscisic acid biosynthetic process	3.33E-04
24	GO:0006729: tetrahydrobiopterin biosynthetic process	3.33E-04
25	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.33E-04
26	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.33E-04
27	GO:0010207: photosystem II assembly	3.85E-04
28	GO:0006000: fructose metabolic process	5.47E-04
29	GO:0006753: nucleoside phosphate metabolic process	5.47E-04
30	GO:0071492: cellular response to UV-A	5.47E-04
31	GO:0009735: response to cytokinin	6.61E-04
32	GO:0080170: hydrogen peroxide transmembrane transport	7.83E-04
33	GO:0055070: copper ion homeostasis	7.83E-04
34	GO:0071484: cellular response to light intensity	7.83E-04
35	GO:0006107: oxaloacetate metabolic process	7.83E-04
36	GO:0010182: sugar mediated signaling pathway	1.03E-03
37	GO:2000122: negative regulation of stomatal complex development	1.04E-03
38	GO:0006546: glycine catabolic process	1.04E-03
39	GO:0006734: NADH metabolic process	1.04E-03
40	GO:0010037: response to carbon dioxide	1.04E-03
41	GO:0015976: carbon utilization	1.04E-03
42	GO:0071486: cellular response to high light intensity	1.04E-03
43	GO:0019464: glycine decarboxylation via glycine cleavage system	1.04E-03
44	GO:0045727: positive regulation of translation	1.04E-03
45	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.27E-03
46	GO:0016120: carotene biosynthetic process	1.31E-03
47	GO:0006656: phosphatidylcholine biosynthetic process	1.31E-03
48	GO:0032543: mitochondrial translation	1.31E-03
49	GO:0045038: protein import into chloroplast thylakoid membrane	1.31E-03
50	GO:0031365: N-terminal protein amino acid modification	1.31E-03
51	GO:0006461: protein complex assembly	1.31E-03
52	GO:0019760: glucosinolate metabolic process	1.53E-03
53	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.61E-03
54	GO:0006561: proline biosynthetic process	1.61E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.61E-03
56	GO:0010027: thylakoid membrane organization	1.81E-03
57	GO:0016126: sterol biosynthetic process	1.81E-03
58	GO:1901259: chloroplast rRNA processing	1.93E-03
59	GO:0017148: negative regulation of translation	1.93E-03
60	GO:0010019: chloroplast-nucleus signaling pathway	1.93E-03
61	GO:0009955: adaxial/abaxial pattern specification	1.93E-03
62	GO:0050829: defense response to Gram-negative bacterium	2.27E-03
63	GO:0015937: coenzyme A biosynthetic process	2.27E-03
64	GO:0010444: guard mother cell differentiation	2.27E-03
65	GO:0006400: tRNA modification	2.27E-03
66	GO:0009395: phospholipid catabolic process	2.27E-03
67	GO:0009772: photosynthetic electron transport in photosystem II	2.27E-03
68	GO:0018298: protein-chromophore linkage	2.36E-03
69	GO:0055114: oxidation-reduction process	2.48E-03
70	GO:0030091: protein repair	2.63E-03
71	GO:0009704: de-etiolation	2.63E-03
72	GO:2000070: regulation of response to water deprivation	2.63E-03
73	GO:0007186: G-protein coupled receptor signaling pathway	3.00E-03
74	GO:0009657: plastid organization	3.00E-03
75	GO:0006002: fructose 6-phosphate metabolic process	3.00E-03
76	GO:0015996: chlorophyll catabolic process	3.00E-03
77	GO:0006839: mitochondrial transport	3.39E-03
78	GO:0009821: alkaloid biosynthetic process	3.40E-03
79	GO:0090333: regulation of stomatal closure	3.40E-03
80	GO:0010205: photoinhibition	3.81E-03
81	GO:0009644: response to high light intensity	4.14E-03
82	GO:0009688: abscisic acid biosynthetic process	4.23E-03
83	GO:0009073: aromatic amino acid family biosynthetic process	4.67E-03
84	GO:0009750: response to fructose	4.67E-03
85	GO:0018119: peptidyl-cysteine S-nitrosylation	4.67E-03
86	GO:0055085: transmembrane transport	5.06E-03
87	GO:0045037: protein import into chloroplast stroma	5.13E-03
88	GO:0006108: malate metabolic process	5.60E-03
89	GO:0009725: response to hormone	5.60E-03
90	GO:0006094: gluconeogenesis	5.60E-03
91	GO:0005986: sucrose biosynthetic process	5.60E-03
92	GO:0019253: reductive pentose-phosphate cycle	6.09E-03
93	GO:0010143: cutin biosynthetic process	6.09E-03
94	GO:0005985: sucrose metabolic process	6.59E-03
95	GO:0046688: response to copper ion	6.59E-03
96	GO:0009225: nucleotide-sugar metabolic process	6.59E-03
97	GO:0006636: unsaturated fatty acid biosynthetic process	7.10E-03
98	GO:0006833: water transport	7.10E-03
99	GO:0019762: glucosinolate catabolic process	7.10E-03
100	GO:0006487: protein N-linked glycosylation	7.63E-03
101	GO:0009768: photosynthesis, light harvesting in photosystem I	8.18E-03
102	GO:0009753: response to jasmonic acid	8.18E-03
103	GO:0031408: oxylipin biosynthetic process	8.73E-03
104	GO:0016998: cell wall macromolecule catabolic process	8.73E-03
105	GO:0009411: response to UV	9.89E-03
106	GO:0042127: regulation of cell proliferation	1.05E-02
107	GO:0034220: ion transmembrane transport	1.17E-02
108	GO:0015986: ATP synthesis coupled proton transport	1.30E-02
109	GO:0009791: post-embryonic development	1.37E-02
110	GO:0002229: defense response to oomycetes	1.43E-02
111	GO:0000302: response to reactive oxygen species	1.43E-02
112	GO:0016132: brassinosteroid biosynthetic process	1.43E-02
113	GO:0009738: abscisic acid-activated signaling pathway	1.49E-02
114	GO:1901657: glycosyl compound metabolic process	1.57E-02
115	GO:0009611: response to wounding	1.59E-02
116	GO:0009409: response to cold	1.62E-02
117	GO:0005975: carbohydrate metabolic process	1.92E-02
118	GO:0042128: nitrate assimilation	2.01E-02
119	GO:0010411: xyloglucan metabolic process	2.09E-02
120	GO:0009817: defense response to fungus, incompatible interaction	2.25E-02
121	GO:0009407: toxin catabolic process	2.41E-02
122	GO:0010218: response to far red light	2.41E-02
123	GO:0009631: cold acclimation	2.49E-02
124	GO:0010119: regulation of stomatal movement	2.49E-02
125	GO:0009637: response to blue light	2.66E-02
126	GO:0034599: cellular response to oxidative stress	2.75E-02
127	GO:0006099: tricarboxylic acid cycle	2.75E-02
128	GO:0010114: response to red light	3.19E-02
129	GO:0009744: response to sucrose	3.19E-02
130	GO:0006869: lipid transport	3.20E-02
131	GO:0042546: cell wall biogenesis	3.28E-02
132	GO:0032259: methylation	3.45E-02
133	GO:0009636: response to toxic substance	3.47E-02
134	GO:0006855: drug transmembrane transport	3.56E-02
135	GO:0042742: defense response to bacterium	3.75E-02
136	GO:0006979: response to oxidative stress	3.78E-02
137	GO:0006364: rRNA processing	3.94E-02
138	GO:0006857: oligopeptide transport	4.14E-02
139	GO:0006096: glycolytic process	4.44E-02
140	GO:0048316: seed development	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
6	GO:1990534: thermospermine oxidase activity	0.00E+00
7	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
8	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
9	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.71E-05
10	GO:0042586: peptide deformylase activity	1.46E-04
11	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.46E-04
12	GO:0010945: CoA pyrophosphatase activity	1.46E-04
13	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.46E-04
14	GO:0008746: NAD(P)+ transhydrogenase activity	1.46E-04
15	GO:0000248: C-5 sterol desaturase activity	1.46E-04
16	GO:0090422: thiamine pyrophosphate transporter activity	1.46E-04
17	GO:0016168: chlorophyll binding	1.74E-04
18	GO:0018708: thiol S-methyltransferase activity	3.33E-04
19	GO:0008967: phosphoglycolate phosphatase activity	3.33E-04
20	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.33E-04
21	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.33E-04
22	GO:0050734: hydroxycinnamoyltransferase activity	5.47E-04
23	GO:0070402: NADPH binding	5.47E-04
24	GO:0022891: substrate-specific transmembrane transporter activity	7.64E-04
25	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	7.83E-04
26	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	7.83E-04
27	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.83E-04
28	GO:0004506: squalene monooxygenase activity	1.04E-03
29	GO:0050378: UDP-glucuronate 4-epimerase activity	1.04E-03
30	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.04E-03
31	GO:0048038: quinone binding	1.27E-03
32	GO:0004130: cytochrome-c peroxidase activity	1.61E-03
33	GO:0000210: NAD+ diphosphatase activity	1.61E-03
34	GO:0016688: L-ascorbate peroxidase activity	1.61E-03
35	GO:0016615: malate dehydrogenase activity	1.61E-03
36	GO:0030060: L-malate dehydrogenase activity	1.93E-03
37	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.93E-03
38	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.93E-03
39	GO:0004033: aldo-keto reductase (NADP) activity	2.63E-03
40	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.00E-03
41	GO:0008135: translation factor activity, RNA binding	3.00E-03
42	GO:0016844: strictosidine synthase activity	3.81E-03
43	GO:0030234: enzyme regulator activity	4.23E-03
44	GO:0004565: beta-galactosidase activity	5.60E-03
45	GO:0004022: alcohol dehydrogenase (NAD) activity	5.60E-03
46	GO:0004089: carbonate dehydratase activity	5.60E-03
47	GO:0031072: heat shock protein binding	5.60E-03
48	GO:0008266: poly(U) RNA binding	6.09E-03
49	GO:0008131: primary amine oxidase activity	6.09E-03
50	GO:0008146: sulfotransferase activity	6.59E-03
51	GO:0031409: pigment binding	7.10E-03
52	GO:0009055: electron carrier activity	8.18E-03
53	GO:0043424: protein histidine kinase binding	8.18E-03
54	GO:0019843: rRNA binding	9.17E-03
55	GO:0046872: metal ion binding	9.57E-03
56	GO:0030570: pectate lyase activity	9.89E-03
57	GO:0004252: serine-type endopeptidase activity	1.02E-02
58	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.24E-02
59	GO:0050662: coenzyme binding	1.30E-02
60	GO:0004872: receptor activity	1.37E-02
61	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.43E-02
62	GO:0016491: oxidoreductase activity	1.55E-02
63	GO:0016759: cellulose synthase activity	1.64E-02
64	GO:0015250: water channel activity	1.86E-02
65	GO:0016740: transferase activity	1.99E-02
66	GO:0008375: acetylglucosaminyltransferase activity	2.01E-02
67	GO:0016788: hydrolase activity, acting on ester bonds	2.01E-02
68	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.01E-02
69	GO:0004683: calmodulin-dependent protein kinase activity	2.09E-02
70	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.09E-02
71	GO:0102483: scopolin beta-glucosidase activity	2.09E-02
72	GO:0008236: serine-type peptidase activity	2.17E-02
73	GO:0050660: flavin adenine dinucleotide binding	2.28E-02
74	GO:0015238: drug transmembrane transporter activity	2.33E-02
75	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.41E-02
76	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.49E-02
77	GO:0003746: translation elongation factor activity	2.66E-02
78	GO:0003993: acid phosphatase activity	2.75E-02
79	GO:0008422: beta-glucosidase activity	2.83E-02
80	GO:0051539: 4 iron, 4 sulfur cluster binding	2.92E-02
81	GO:0004364: glutathione transferase activity	3.10E-02
82	GO:0005509: calcium ion binding	3.39E-02
83	GO:0015293: symporter activity	3.47E-02
84	GO:0031625: ubiquitin protein ligase binding	4.24E-02
85	GO:0005215: transporter activity	4.24E-02
86	GO:0008289: lipid binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009507: chloroplast	2.39E-27
3	GO:0009535: chloroplast thylakoid membrane	6.02E-23
4	GO:0009579: thylakoid	1.46E-17
5	GO:0009534: chloroplast thylakoid	2.24E-13
6	GO:0009570: chloroplast stroma	2.88E-11
7	GO:0009941: chloroplast envelope	1.93E-10
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.17E-08
9	GO:0030095: chloroplast photosystem II	1.85E-07
10	GO:0009543: chloroplast thylakoid lumen	6.95E-07
11	GO:0048046: apoplast	1.73E-06
12	GO:0010319: stromule	5.70E-06
13	GO:0031977: thylakoid lumen	2.99E-05
14	GO:0009523: photosystem II	8.48E-05
15	GO:0010287: plastoglobule	1.60E-04
16	GO:0009528: plastid inner membrane	5.47E-04
17	GO:0009654: photosystem II oxygen evolving complex	5.87E-04
18	GO:0009532: plastid stroma	6.43E-04
19	GO:0005960: glycine cleavage complex	7.83E-04
20	GO:0009527: plastid outer membrane	1.04E-03
21	GO:0019898: extrinsic component of membrane	1.19E-03
22	GO:0016021: integral component of membrane	1.27E-03
23	GO:0055035: plastid thylakoid membrane	1.31E-03
24	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.61E-03
25	GO:0009840: chloroplastic endopeptidase Clp complex	1.93E-03
26	GO:0009533: chloroplast stromal thylakoid	2.27E-03
27	GO:0005763: mitochondrial small ribosomal subunit	3.40E-03
28	GO:0031969: chloroplast membrane	4.56E-03
29	GO:0030076: light-harvesting complex	6.59E-03
30	GO:0042651: thylakoid membrane	8.18E-03
31	GO:0015935: small ribosomal subunit	8.73E-03
32	GO:0009522: photosystem I	1.30E-02
33	GO:0032580: Golgi cisterna membrane	1.64E-02
34	GO:0046658: anchored component of plasma membrane	1.68E-02
35	GO:0005778: peroxisomal membrane	1.72E-02
36	GO:0009707: chloroplast outer membrane	2.25E-02
37	GO:0005743: mitochondrial inner membrane	3.35E-02
38	GO:0009536: plastid	4.81E-02