Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G35860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0060416: response to growth hormone0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0090393: sepal giant cell development0.00E+00
5GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
6GO:0071555: cell wall organization6.24E-06
7GO:0006546: glycine catabolic process3.99E-05
8GO:0009833: plant-type primary cell wall biogenesis5.69E-05
9GO:0019722: calcium-mediated signaling1.34E-04
10GO:0045490: pectin catabolic process1.39E-04
11GO:0009704: de-etiolation2.16E-04
12GO:0019510: S-adenosylhomocysteine catabolic process2.39E-04
13GO:0051180: vitamin transport2.39E-04
14GO:0030974: thiamine pyrophosphate transport2.39E-04
15GO:0010442: guard cell morphogenesis2.39E-04
16GO:0071370: cellular response to gibberellin stimulus2.39E-04
17GO:0046520: sphingoid biosynthetic process2.39E-04
18GO:1901599: (-)-pinoresinol biosynthetic process2.39E-04
19GO:0006659: phosphatidylserine biosynthetic process2.39E-04
20GO:0071277: cellular response to calcium ion2.39E-04
21GO:0033481: galacturonate biosynthetic process2.39E-04
22GO:0007267: cell-cell signaling3.53E-04
23GO:0010192: mucilage biosynthetic process4.48E-04
24GO:0018119: peptidyl-cysteine S-nitrosylation5.19E-04
25GO:0030388: fructose 1,6-bisphosphate metabolic process5.29E-04
26GO:0052541: plant-type cell wall cellulose metabolic process5.29E-04
27GO:0033353: S-adenosylmethionine cycle5.29E-04
28GO:0015786: UDP-glucose transport5.29E-04
29GO:0015893: drug transport5.29E-04
30GO:0060919: auxin influx5.29E-04
31GO:0080148: negative regulation of response to water deprivation5.29E-04
32GO:0006810: transport5.38E-04
33GO:0015783: GDP-fucose transport8.60E-04
34GO:0006557: S-adenosylmethioninamine biosynthetic process8.60E-04
35GO:0090506: axillary shoot meristem initiation8.60E-04
36GO:0006000: fructose metabolic process8.60E-04
37GO:0006696: ergosterol biosynthetic process8.60E-04
38GO:0006833: water transport9.38E-04
39GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.23E-03
40GO:0006166: purine ribonucleoside salvage1.23E-03
41GO:0007231: osmosensory signaling pathway1.23E-03
42GO:0006241: CTP biosynthetic process1.23E-03
43GO:0072334: UDP-galactose transmembrane transport1.23E-03
44GO:0006165: nucleoside diphosphate phosphorylation1.23E-03
45GO:0006228: UTP biosynthetic process1.23E-03
46GO:0006168: adenine salvage1.23E-03
47GO:0032877: positive regulation of DNA endoreduplication1.23E-03
48GO:0030245: cellulose catabolic process1.36E-03
49GO:0015976: carbon utilization1.64E-03
50GO:0019464: glycine decarboxylation via glycine cleavage system1.64E-03
51GO:0009765: photosynthesis, light harvesting1.64E-03
52GO:2000122: negative regulation of stomatal complex development1.64E-03
53GO:0006085: acetyl-CoA biosynthetic process1.64E-03
54GO:0006183: GTP biosynthetic process1.64E-03
55GO:0045727: positive regulation of translation1.64E-03
56GO:0033500: carbohydrate homeostasis1.64E-03
57GO:0031122: cytoplasmic microtubule organization1.64E-03
58GO:0006021: inositol biosynthetic process1.64E-03
59GO:0006749: glutathione metabolic process1.64E-03
60GO:0009694: jasmonic acid metabolic process1.64E-03
61GO:0010037: response to carbon dioxide1.64E-03
62GO:0016117: carotenoid biosynthetic process1.75E-03
63GO:0034220: ion transmembrane transport1.89E-03
64GO:0016123: xanthophyll biosynthetic process2.09E-03
65GO:0044209: AMP salvage2.09E-03
66GO:0032876: negative regulation of DNA endoreduplication2.09E-03
67GO:0046785: microtubule polymerization2.09E-03
68GO:0048359: mucilage metabolic process involved in seed coat development2.09E-03
69GO:0016120: carotene biosynthetic process2.09E-03
70GO:0006656: phosphatidylcholine biosynthetic process2.09E-03
71GO:0042545: cell wall modification2.33E-03
72GO:0009791: post-embryonic development2.34E-03
73GO:0071554: cell wall organization or biogenesis2.50E-03
74GO:0010405: arabinogalactan protein metabolic process2.57E-03
75GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.57E-03
76GO:0045962: positive regulation of development, heterochronic2.57E-03
77GO:0018258: protein O-linked glycosylation via hydroxyproline2.57E-03
78GO:0010583: response to cyclopentenone2.67E-03
79GO:0042742: defense response to bacterium2.68E-03
80GO:0010090: trichome morphogenesis2.85E-03
81GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.09E-03
82GO:0045926: negative regulation of growth3.09E-03
83GO:0010067: procambium histogenesis3.09E-03
84GO:0017148: negative regulation of translation3.09E-03
85GO:0045454: cell redox homeostasis3.11E-03
86GO:0016126: sterol biosynthetic process3.61E-03
87GO:0050790: regulation of catalytic activity3.64E-03
88GO:0050829: defense response to Gram-negative bacterium3.64E-03
89GO:0006875: cellular metal ion homeostasis4.23E-03
90GO:0009817: defense response to fungus, incompatible interaction4.70E-03
91GO:0030244: cellulose biosynthetic process4.70E-03
92GO:0018298: protein-chromophore linkage4.70E-03
93GO:0006002: fructose 6-phosphate metabolic process4.84E-03
94GO:0032544: plastid translation4.84E-03
95GO:0007389: pattern specification process4.84E-03
96GO:0007623: circadian rhythm4.85E-03
97GO:0009832: plant-type cell wall biogenesis4.94E-03
98GO:0090333: regulation of stomatal closure5.48E-03
99GO:0006754: ATP biosynthetic process5.48E-03
100GO:0048589: developmental growth5.48E-03
101GO:0016051: carbohydrate biosynthetic process5.96E-03
102GO:0005975: carbohydrate metabolic process6.09E-03
103GO:0048354: mucilage biosynthetic process involved in seed coat development6.15E-03
104GO:0006839: mitochondrial transport6.79E-03
105GO:0019538: protein metabolic process6.85E-03
106GO:0043069: negative regulation of programmed cell death6.85E-03
107GO:0048829: root cap development6.85E-03
108GO:0000038: very long-chain fatty acid metabolic process7.58E-03
109GO:0006816: calcium ion transport7.58E-03
110GO:0043085: positive regulation of catalytic activity7.58E-03
111GO:0009773: photosynthetic electron transport in photosystem I7.58E-03
112GO:0000272: polysaccharide catabolic process7.58E-03
113GO:0009807: lignan biosynthetic process7.58E-03
114GO:0008643: carbohydrate transport8.31E-03
115GO:0006820: anion transport8.33E-03
116GO:0045037: protein import into chloroplast stroma8.33E-03
117GO:0009658: chloroplast organization8.46E-03
118GO:0050826: response to freezing9.11E-03
119GO:0009725: response to hormone9.11E-03
120GO:0006094: gluconeogenesis9.11E-03
121GO:0005986: sucrose biosynthetic process9.11E-03
122GO:0048768: root hair cell tip growth9.92E-03
123GO:0019253: reductive pentose-phosphate cycle9.92E-03
124GO:0010223: secondary shoot formation9.92E-03
125GO:0009969: xyloglucan biosynthetic process1.07E-02
126GO:0009225: nucleotide-sugar metabolic process1.07E-02
127GO:0009825: multidimensional cell growth1.07E-02
128GO:0005985: sucrose metabolic process1.07E-02
129GO:0070588: calcium ion transmembrane transport1.07E-02
130GO:0006071: glycerol metabolic process1.16E-02
131GO:0019762: glucosinolate catabolic process1.16E-02
132GO:0006487: protein N-linked glycosylation1.25E-02
133GO:0007010: cytoskeleton organization1.25E-02
134GO:0015979: photosynthesis1.32E-02
135GO:0010026: trichome differentiation1.34E-02
136GO:0009695: jasmonic acid biosynthetic process1.34E-02
137GO:0043622: cortical microtubule organization1.34E-02
138GO:0009768: photosynthesis, light harvesting in photosystem I1.34E-02
139GO:0007017: microtubule-based process1.34E-02
140GO:0031408: oxylipin biosynthetic process1.43E-02
141GO:0003333: amino acid transmembrane transport1.43E-02
142GO:0016998: cell wall macromolecule catabolic process1.43E-02
143GO:0055085: transmembrane transport1.47E-02
144GO:0006730: one-carbon metabolic process1.53E-02
145GO:0080092: regulation of pollen tube growth1.53E-02
146GO:0009742: brassinosteroid mediated signaling pathway1.57E-02
147GO:0009294: DNA mediated transformation1.62E-02
148GO:0001944: vasculature development1.62E-02
149GO:0010089: xylem development1.72E-02
150GO:0032259: methylation1.73E-02
151GO:0006629: lipid metabolic process1.82E-02
152GO:0010087: phloem or xylem histogenesis1.93E-02
153GO:0042631: cellular response to water deprivation1.93E-02
154GO:0000271: polysaccharide biosynthetic process1.93E-02
155GO:0080022: primary root development1.93E-02
156GO:0042335: cuticle development1.93E-02
157GO:0010051: xylem and phloem pattern formation1.93E-02
158GO:0009741: response to brassinosteroid2.03E-02
159GO:0045489: pectin biosynthetic process2.03E-02
160GO:0006662: glycerol ether metabolic process2.03E-02
161GO:0019252: starch biosynthetic process2.25E-02
162GO:0008654: phospholipid biosynthetic process2.25E-02
163GO:0006633: fatty acid biosynthetic process2.33E-02
164GO:0007264: small GTPase mediated signal transduction2.47E-02
165GO:0019761: glucosinolate biosynthetic process2.47E-02
166GO:1901657: glycosyl compound metabolic process2.59E-02
167GO:0009617: response to bacterium3.06E-02
168GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.19E-02
169GO:0042128: nitrate assimilation3.32E-02
170GO:0010411: xyloglucan metabolic process3.45E-02
171GO:0016049: cell growth3.58E-02
172GO:0009611: response to wounding3.83E-02
173GO:0048767: root hair elongation3.84E-02
174GO:0000160: phosphorelay signal transduction system3.84E-02
175GO:0010311: lateral root formation3.84E-02
176GO:0009407: toxin catabolic process3.97E-02
177GO:0010218: response to far red light3.97E-02
178GO:0048527: lateral root development4.11E-02
179GO:0010119: regulation of stomatal movement4.11E-02
180GO:0051301: cell division4.15E-02
181GO:0006865: amino acid transport4.25E-02
182GO:0009637: response to blue light4.39E-02
183GO:0009867: jasmonic acid mediated signaling pathway4.39E-02
184GO:0007049: cell cycle4.41E-02
185GO:0055114: oxidation-reduction process4.47E-02
186GO:0034599: cellular response to oxidative stress4.53E-02
187GO:0006631: fatty acid metabolic process4.95E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0047259: glucomannan 4-beta-mannosyltransferase activity0.00E+00
3GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0030795: jasmonate O-methyltransferase activity0.00E+00
7GO:0046905: phytoene synthase activity0.00E+00
8GO:0102078: methyl jasmonate methylesterase activity0.00E+00
9GO:0051920: peroxiredoxin activity1.29E-04
10GO:0051753: mannan synthase activity1.29E-04
11GO:0016209: antioxidant activity2.16E-04
12GO:0042349: guiding stereospecific synthesis activity2.39E-04
13GO:0000170: sphingosine hydroxylase activity2.39E-04
14GO:0030797: 24-methylenesterol C-methyltransferase activity2.39E-04
15GO:0004560: alpha-L-fucosidase activity2.39E-04
16GO:0090422: thiamine pyrophosphate transporter activity2.39E-04
17GO:0004013: adenosylhomocysteinase activity2.39E-04
18GO:0008568: microtubule-severing ATPase activity2.39E-04
19GO:0080132: fatty acid alpha-hydroxylase activity2.39E-04
20GO:0015088: copper uptake transmembrane transporter activity2.39E-04
21GO:0051996: squalene synthase activity2.39E-04
22GO:0010313: phytochrome binding2.39E-04
23GO:0016759: cellulose synthase activity3.26E-04
24GO:0030599: pectinesterase activity3.47E-04
25GO:0016757: transferase activity, transferring glycosyl groups4.90E-04
26GO:0010297: heteropolysaccharide binding5.29E-04
27GO:0004047: aminomethyltransferase activity5.29E-04
28GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity5.29E-04
29GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.29E-04
30GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity5.29E-04
31GO:0042284: sphingolipid delta-4 desaturase activity5.29E-04
32GO:0004512: inositol-3-phosphate synthase activity5.29E-04
33GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.29E-04
34GO:0000234: phosphoethanolamine N-methyltransferase activity5.29E-04
35GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity5.29E-04
36GO:0008967: phosphoglycolate phosphatase activity5.29E-04
37GO:0005457: GDP-fucose transmembrane transporter activity8.60E-04
38GO:0004014: adenosylmethionine decarboxylase activity8.60E-04
39GO:0003913: DNA photolyase activity8.60E-04
40GO:0004148: dihydrolipoyl dehydrogenase activity8.60E-04
41GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity8.60E-04
42GO:0003824: catalytic activity9.41E-04
43GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.15E-03
44GO:0003878: ATP citrate synthase activity1.23E-03
45GO:0004375: glycine dehydrogenase (decarboxylating) activity1.23E-03
46GO:0048027: mRNA 5'-UTR binding1.23E-03
47GO:0003999: adenine phosphoribosyltransferase activity1.23E-03
48GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity1.23E-03
49GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.23E-03
50GO:0005460: UDP-glucose transmembrane transporter activity1.23E-03
51GO:0004550: nucleoside diphosphate kinase activity1.23E-03
52GO:0016760: cellulose synthase (UDP-forming) activity1.48E-03
53GO:0030570: pectate lyase activity1.48E-03
54GO:0008810: cellulase activity1.48E-03
55GO:0004659: prenyltransferase activity1.64E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.64E-03
57GO:0010328: auxin influx transmembrane transporter activity1.64E-03
58GO:0004506: squalene monooxygenase activity1.64E-03
59GO:0050378: UDP-glucuronate 4-epimerase activity1.64E-03
60GO:0045330: aspartyl esterase activity1.76E-03
61GO:0008381: mechanically-gated ion channel activity2.09E-03
62GO:0005459: UDP-galactose transmembrane transporter activity2.09E-03
63GO:0022857: transmembrane transporter activity2.24E-03
64GO:1990714: hydroxyproline O-galactosyltransferase activity2.57E-03
65GO:0000210: NAD+ diphosphatase activity2.57E-03
66GO:0042578: phosphoric ester hydrolase activity2.57E-03
67GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.09E-03
68GO:0005200: structural constituent of cytoskeleton3.21E-03
69GO:0016413: O-acetyltransferase activity3.41E-03
70GO:0015250: water channel activity3.61E-03
71GO:0009881: photoreceptor activity3.64E-03
72GO:0008375: acetylglucosaminyltransferase activity4.03E-03
73GO:0004564: beta-fructofuranosidase activity4.23E-03
74GO:0008135: translation factor activity, RNA binding4.84E-03
75GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.48E-03
76GO:0008889: glycerophosphodiester phosphodiesterase activity5.48E-03
77GO:0003746: translation elongation factor activity5.96E-03
78GO:0004575: sucrose alpha-glucosidase activity6.15E-03
79GO:0005381: iron ion transmembrane transporter activity6.15E-03
80GO:0030234: enzyme regulator activity6.85E-03
81GO:0008047: enzyme activator activity6.85E-03
82GO:0047372: acylglycerol lipase activity7.58E-03
83GO:0005089: Rho guanyl-nucleotide exchange factor activity7.58E-03
84GO:0004860: protein kinase inhibitor activity7.58E-03
85GO:0008378: galactosyltransferase activity8.33E-03
86GO:0015293: symporter activity8.64E-03
87GO:0004089: carbonate dehydratase activity9.11E-03
88GO:0005262: calcium channel activity9.11E-03
89GO:0004565: beta-galactosidase activity9.11E-03
90GO:0050660: flavin adenine dinucleotide binding1.02E-02
91GO:0031409: pigment binding1.16E-02
92GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.16E-02
93GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.16E-02
94GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.16E-02
95GO:0004857: enzyme inhibitor activity1.25E-02
96GO:0051087: chaperone binding1.34E-02
97GO:0033612: receptor serine/threonine kinase binding1.43E-02
98GO:0004871: signal transducer activity1.48E-02
99GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.53E-02
100GO:0008514: organic anion transmembrane transporter activity1.72E-02
101GO:0004499: N,N-dimethylaniline monooxygenase activity1.72E-02
102GO:0016758: transferase activity, transferring hexosyl groups1.81E-02
103GO:0047134: protein-disulfide reductase activity1.82E-02
104GO:0005102: receptor binding1.82E-02
105GO:0003924: GTPase activity1.82E-02
106GO:0004791: thioredoxin-disulfide reductase activity2.14E-02
107GO:0050662: coenzyme binding2.14E-02
108GO:0004872: receptor activity2.25E-02
109GO:0019901: protein kinase binding2.25E-02
110GO:0048038: quinone binding2.36E-02
111GO:0016762: xyloglucan:xyloglucosyl transferase activity2.36E-02
112GO:0015297: antiporter activity2.45E-02
113GO:0004518: nuclease activity2.47E-02
114GO:0000156: phosphorelay response regulator activity2.59E-02
115GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.59E-02
116GO:0008483: transaminase activity2.83E-02
117GO:0016722: oxidoreductase activity, oxidizing metal ions2.83E-02
118GO:0016168: chlorophyll binding3.19E-02
119GO:0009931: calcium-dependent protein serine/threonine kinase activity3.32E-02
120GO:0005215: transporter activity3.40E-02
121GO:0004683: calmodulin-dependent protein kinase activity3.45E-02
122GO:0016798: hydrolase activity, acting on glycosyl bonds3.45E-02
123GO:0102483: scopolin beta-glucosidase activity3.45E-02
124GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.58E-02
125GO:0004601: peroxidase activity3.96E-02
126GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.97E-02
127GO:0016788: hydrolase activity, acting on ester bonds4.03E-02
128GO:0050897: cobalt ion binding4.11E-02
129GO:0008422: beta-glucosidase activity4.67E-02
130GO:0050661: NADP binding4.81E-02
RankGO TermAdjusted P value
1GO:0048046: apoplast9.92E-11
2GO:0005794: Golgi apparatus4.69E-08
3GO:0009505: plant-type cell wall2.89E-07
4GO:0009941: chloroplast envelope1.54E-06
5GO:0005886: plasma membrane1.50E-04
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.23E-04
7GO:0031225: anchored component of membrane4.28E-04
8GO:0000139: Golgi membrane4.40E-04
9GO:0010287: plastoglobule4.99E-04
10GO:0000427: plastid-encoded plastid RNA polymerase complex5.29E-04
11GO:0005576: extracellular region6.99E-04
12GO:0005618: cell wall7.56E-04
13GO:0010330: cellulose synthase complex8.60E-04
14GO:0005853: eukaryotic translation elongation factor 1 complex8.60E-04
15GO:0009534: chloroplast thylakoid9.65E-04
16GO:0009507: chloroplast1.09E-03
17GO:0005775: vacuolar lumen1.23E-03
18GO:0005960: glycine cleavage complex1.23E-03
19GO:0009346: citrate lyase complex1.23E-03
20GO:0016021: integral component of membrane1.41E-03
21GO:0009535: chloroplast thylakoid membrane1.48E-03
22GO:0016020: membrane1.56E-03
23GO:0031897: Tic complex1.64E-03
24GO:0009570: chloroplast stroma3.03E-03
25GO:0010005: cortical microtubule, transverse to long axis3.09E-03
26GO:0010319: stromule3.21E-03
27GO:0009543: chloroplast thylakoid lumen3.22E-03
28GO:0009579: thylakoid3.63E-03
29GO:0009533: chloroplast stromal thylakoid3.64E-03
30GO:0045298: tubulin complex5.48E-03
31GO:0005887: integral component of plasma membrane6.81E-03
32GO:0055028: cortical microtubule6.85E-03
33GO:0016324: apical plasma membrane6.85E-03
34GO:0046658: anchored component of plasma membrane6.93E-03
35GO:0048471: perinuclear region of cytoplasm7.58E-03
36GO:0009506: plasmodesma8.95E-03
37GO:0030095: chloroplast photosystem II9.92E-03
38GO:0030076: light-harvesting complex1.07E-02
39GO:0005875: microtubule associated complex1.16E-02
40GO:0005758: mitochondrial intermembrane space1.25E-02
41GO:0009654: photosystem II oxygen evolving complex1.34E-02
42GO:0009706: chloroplast inner membrane1.48E-02
43GO:0009522: photosystem I2.14E-02
44GO:0019898: extrinsic component of membrane2.25E-02
45GO:0032580: Golgi cisterna membrane2.71E-02
46GO:0005615: extracellular space2.87E-02
47GO:0000325: plant-type vacuole4.11E-02
48GO:0031969: chloroplast membrane4.89E-02
49GO:0031902: late endosome membrane4.95E-02
Gene type



Gene DE type