GO Enrichment Analysis of Co-expressed Genes with
AT2G35410
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:0042407: cristae formation | 0.00E+00 |
| 3 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 4 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 5 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 9 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 10 | GO:0009658: chloroplast organization | 1.31E-08 |
| 11 | GO:0032544: plastid translation | 3.55E-07 |
| 12 | GO:0010190: cytochrome b6f complex assembly | 1.33E-05 |
| 13 | GO:0042549: photosystem II stabilization | 1.33E-05 |
| 14 | GO:0071482: cellular response to light stimulus | 4.37E-05 |
| 15 | GO:1904966: positive regulation of vitamin E biosynthetic process | 7.23E-05 |
| 16 | GO:1904964: positive regulation of phytol biosynthetic process | 7.23E-05 |
| 17 | GO:0006415: translational termination | 9.43E-05 |
| 18 | GO:0010207: photosystem II assembly | 1.45E-04 |
| 19 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.74E-04 |
| 20 | GO:0034755: iron ion transmembrane transport | 1.74E-04 |
| 21 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.74E-04 |
| 22 | GO:0010270: photosystem II oxygen evolving complex assembly | 1.74E-04 |
| 23 | GO:0043039: tRNA aminoacylation | 1.74E-04 |
| 24 | GO:0015979: photosynthesis | 2.29E-04 |
| 25 | GO:0006418: tRNA aminoacylation for protein translation | 2.30E-04 |
| 26 | GO:0061077: chaperone-mediated protein folding | 2.53E-04 |
| 27 | GO:0010581: regulation of starch biosynthetic process | 2.93E-04 |
| 28 | GO:0016556: mRNA modification | 4.23E-04 |
| 29 | GO:2001141: regulation of RNA biosynthetic process | 4.23E-04 |
| 30 | GO:0010239: chloroplast mRNA processing | 4.23E-04 |
| 31 | GO:0006021: inositol biosynthetic process | 5.65E-04 |
| 32 | GO:0006808: regulation of nitrogen utilization | 5.65E-04 |
| 33 | GO:0006412: translation | 7.22E-04 |
| 34 | GO:0010027: thylakoid membrane organization | 7.34E-04 |
| 35 | GO:0015995: chlorophyll biosynthetic process | 8.59E-04 |
| 36 | GO:0006828: manganese ion transport | 8.73E-04 |
| 37 | GO:0016554: cytidine to uridine editing | 8.73E-04 |
| 38 | GO:0042026: protein refolding | 1.04E-03 |
| 39 | GO:0006458: 'de novo' protein folding | 1.04E-03 |
| 40 | GO:0009854: oxidative photosynthetic carbon pathway | 1.04E-03 |
| 41 | GO:0009853: photorespiration | 1.18E-03 |
| 42 | GO:0010196: nonphotochemical quenching | 1.21E-03 |
| 43 | GO:0006457: protein folding | 1.22E-03 |
| 44 | GO:0000105: histidine biosynthetic process | 1.40E-03 |
| 45 | GO:0009657: plastid organization | 1.59E-03 |
| 46 | GO:0019430: removal of superoxide radicals | 1.59E-03 |
| 47 | GO:0017004: cytochrome complex assembly | 1.59E-03 |
| 48 | GO:1900865: chloroplast RNA modification | 2.01E-03 |
| 49 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.01E-03 |
| 50 | GO:0043067: regulation of programmed cell death | 2.01E-03 |
| 51 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.01E-03 |
| 52 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.23E-03 |
| 53 | GO:0009773: photosynthetic electron transport in photosystem I | 2.46E-03 |
| 54 | GO:0043085: positive regulation of catalytic activity | 2.46E-03 |
| 55 | GO:0006879: cellular iron ion homeostasis | 2.46E-03 |
| 56 | GO:0006352: DNA-templated transcription, initiation | 2.46E-03 |
| 57 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.46E-03 |
| 58 | GO:0006816: calcium ion transport | 2.46E-03 |
| 59 | GO:0045037: protein import into chloroplast stroma | 2.70E-03 |
| 60 | GO:0006790: sulfur compound metabolic process | 2.70E-03 |
| 61 | GO:0010020: chloroplast fission | 3.19E-03 |
| 62 | GO:0019253: reductive pentose-phosphate cycle | 3.19E-03 |
| 63 | GO:0090351: seedling development | 3.44E-03 |
| 64 | GO:0046854: phosphatidylinositol phosphorylation | 3.44E-03 |
| 65 | GO:0009790: embryo development | 4.16E-03 |
| 66 | GO:0016575: histone deacetylation | 4.26E-03 |
| 67 | GO:0006810: transport | 4.32E-03 |
| 68 | GO:0006730: one-carbon metabolic process | 4.83E-03 |
| 69 | GO:0016117: carotenoid biosynthetic process | 5.74E-03 |
| 70 | GO:0008380: RNA splicing | 5.86E-03 |
| 71 | GO:0000413: protein peptidyl-prolyl isomerization | 6.05E-03 |
| 72 | GO:0010197: polar nucleus fusion | 6.38E-03 |
| 73 | GO:0006814: sodium ion transport | 6.70E-03 |
| 74 | GO:0009793: embryo development ending in seed dormancy | 8.60E-03 |
| 75 | GO:0042128: nitrate assimilation | 1.03E-02 |
| 76 | GO:0045454: cell redox homeostasis | 1.13E-02 |
| 77 | GO:0009817: defense response to fungus, incompatible interaction | 1.15E-02 |
| 78 | GO:0048481: plant ovule development | 1.15E-02 |
| 79 | GO:0018298: protein-chromophore linkage | 1.15E-02 |
| 80 | GO:0006508: proteolysis | 1.32E-02 |
| 81 | GO:0009637: response to blue light | 1.36E-02 |
| 82 | GO:0010114: response to red light | 1.63E-02 |
| 83 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.06E-02 |
| 84 | GO:0006096: glycolytic process | 2.26E-02 |
| 85 | GO:0009735: response to cytokinin | 2.26E-02 |
| 86 | GO:0006396: RNA processing | 2.64E-02 |
| 87 | GO:0042744: hydrogen peroxide catabolic process | 3.32E-02 |
| 88 | GO:0006413: translational initiation | 3.63E-02 |
| 89 | GO:0040008: regulation of growth | 3.69E-02 |
| 90 | GO:0009451: RNA modification | 3.87E-02 |
| 91 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 4.92E-02 |
| 92 | GO:0042742: defense response to bacterium | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 2 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 3 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 4 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 5 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 6 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 7 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 8 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 9 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 10 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 11 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.78E-07 |
| 13 | GO:0016149: translation release factor activity, codon specific | 2.69E-06 |
| 14 | GO:0005528: FK506 binding | 4.61E-06 |
| 15 | GO:0019843: rRNA binding | 3.07E-05 |
| 16 | GO:0003747: translation release factor activity | 5.45E-05 |
| 17 | GO:0004831: tyrosine-tRNA ligase activity | 7.23E-05 |
| 18 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 7.23E-05 |
| 19 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.74E-04 |
| 20 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.74E-04 |
| 21 | GO:0004618: phosphoglycerate kinase activity | 1.74E-04 |
| 22 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.74E-04 |
| 23 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.74E-04 |
| 24 | GO:0004817: cysteine-tRNA ligase activity | 1.74E-04 |
| 25 | GO:0002161: aminoacyl-tRNA editing activity | 2.93E-04 |
| 26 | GO:0017150: tRNA dihydrouridine synthase activity | 2.93E-04 |
| 27 | GO:0004812: aminoacyl-tRNA ligase activity | 3.59E-04 |
| 28 | GO:0003735: structural constituent of ribosome | 3.79E-04 |
| 29 | GO:0048487: beta-tubulin binding | 4.23E-04 |
| 30 | GO:0043023: ribosomal large subunit binding | 4.23E-04 |
| 31 | GO:0008097: 5S rRNA binding | 4.23E-04 |
| 32 | GO:0008508: bile acid:sodium symporter activity | 4.23E-04 |
| 33 | GO:0043495: protein anchor | 5.65E-04 |
| 34 | GO:0001053: plastid sigma factor activity | 5.65E-04 |
| 35 | GO:0004045: aminoacyl-tRNA hydrolase activity | 5.65E-04 |
| 36 | GO:0016987: sigma factor activity | 5.65E-04 |
| 37 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 7.14E-04 |
| 38 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.04E-03 |
| 39 | GO:0019899: enzyme binding | 1.21E-03 |
| 40 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.59E-03 |
| 41 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.63E-03 |
| 42 | GO:0005384: manganese ion transmembrane transporter activity | 2.01E-03 |
| 43 | GO:0005381: iron ion transmembrane transporter activity | 2.01E-03 |
| 44 | GO:0008047: enzyme activator activity | 2.23E-03 |
| 45 | GO:0015386: potassium:proton antiporter activity | 2.46E-03 |
| 46 | GO:0044183: protein binding involved in protein folding | 2.46E-03 |
| 47 | GO:0004519: endonuclease activity | 2.49E-03 |
| 48 | GO:0000049: tRNA binding | 2.70E-03 |
| 49 | GO:0051082: unfolded protein binding | 2.86E-03 |
| 50 | GO:0015095: magnesium ion transmembrane transporter activity | 2.94E-03 |
| 51 | GO:0031072: heat shock protein binding | 2.94E-03 |
| 52 | GO:0004407: histone deacetylase activity | 3.98E-03 |
| 53 | GO:0015079: potassium ion transmembrane transporter activity | 4.26E-03 |
| 54 | GO:0022891: substrate-specific transmembrane transporter activity | 5.13E-03 |
| 55 | GO:0042802: identical protein binding | 6.23E-03 |
| 56 | GO:0004791: thioredoxin-disulfide reductase activity | 6.70E-03 |
| 57 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.07E-03 |
| 58 | GO:0008237: metallopeptidase activity | 8.79E-03 |
| 59 | GO:0016168: chlorophyll binding | 9.92E-03 |
| 60 | GO:0004721: phosphoprotein phosphatase activity | 1.07E-02 |
| 61 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.11E-02 |
| 62 | GO:0008236: serine-type peptidase activity | 1.11E-02 |
| 63 | GO:0004222: metalloendopeptidase activity | 1.23E-02 |
| 64 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.40E-02 |
| 65 | GO:0004185: serine-type carboxypeptidase activity | 1.63E-02 |
| 66 | GO:0043621: protein self-association | 1.72E-02 |
| 67 | GO:0005198: structural molecule activity | 1.77E-02 |
| 68 | GO:0003723: RNA binding | 1.78E-02 |
| 69 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.01E-02 |
| 70 | GO:0022857: transmembrane transporter activity | 2.47E-02 |
| 71 | GO:0016746: transferase activity, transferring acyl groups | 2.64E-02 |
| 72 | GO:0008565: protein transporter activity | 3.44E-02 |
| 73 | GO:0003743: translation initiation factor activity | 4.26E-02 |
| 74 | GO:0005509: calcium ion binding | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.76E-40 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.98E-16 |
| 3 | GO:0009570: chloroplast stroma | 2.39E-16 |
| 4 | GO:0009941: chloroplast envelope | 7.28E-14 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 1.60E-11 |
| 6 | GO:0009579: thylakoid | 9.04E-08 |
| 7 | GO:0031977: thylakoid lumen | 9.31E-08 |
| 8 | GO:0042651: thylakoid membrane | 5.49E-06 |
| 9 | GO:0031969: chloroplast membrane | 1.48E-05 |
| 10 | GO:0009534: chloroplast thylakoid | 1.87E-04 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 2.30E-04 |
| 12 | GO:0009523: photosystem II | 4.81E-04 |
| 13 | GO:0019898: extrinsic component of membrane | 4.81E-04 |
| 14 | GO:0015934: large ribosomal subunit | 1.08E-03 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.80E-03 |
| 16 | GO:0005840: ribosome | 2.59E-03 |
| 17 | GO:0009706: chloroplast inner membrane | 2.86E-03 |
| 18 | GO:0030095: chloroplast photosystem II | 3.19E-03 |
| 19 | GO:0009536: plastid | 3.28E-03 |
| 20 | GO:0009532: plastid stroma | 4.54E-03 |
| 21 | GO:0010319: stromule | 8.79E-03 |
| 22 | GO:0030529: intracellular ribonucleoprotein complex | 9.54E-03 |
| 23 | GO:0043231: intracellular membrane-bounded organelle | 1.54E-02 |
| 24 | GO:0016020: membrane | 2.02E-02 |
| 25 | GO:0005623: cell | 3.09E-02 |
| 26 | GO:0005759: mitochondrial matrix | 3.56E-02 |