co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G34620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	3.60E-07
4	GO:0090391: granum assembly	9.82E-06
5	GO:0015979: photosynthesis	1.39E-05
6	GO:0006869: lipid transport	2.15E-05
7	GO:0010027: thylakoid membrane organization	3.13E-05
8	GO:0009956: radial pattern formation	4.05E-05
9	GO:0010207: photosystem II assembly	4.06E-05
10	GO:0009735: response to cytokinin	1.19E-04
11	GO:0042335: cuticle development	1.71E-04
12	GO:0010196: nonphotochemical quenching	1.72E-04
13	GO:0046520: sphingoid biosynthetic process	2.41E-04
14	GO:0071277: cellular response to calcium ion	2.41E-04
15	GO:0033481: galacturonate biosynthetic process	2.41E-04
16	GO:1902458: positive regulation of stomatal opening	2.41E-04
17	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.41E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	2.41E-04
19	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.41E-04
20	GO:0042254: ribosome biogenesis	3.49E-04
21	GO:0010205: photoinhibition	3.89E-04
22	GO:0001736: establishment of planar polarity	5.34E-04
23	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.34E-04
24	GO:0010024: phytochromobilin biosynthetic process	5.34E-04
25	GO:0043255: regulation of carbohydrate biosynthetic process	5.34E-04
26	GO:0010115: regulation of abscisic acid biosynthetic process	5.34E-04
27	GO:0016024: CDP-diacylglycerol biosynthetic process	6.01E-04
28	GO:0009933: meristem structural organization	7.67E-04
29	GO:0010143: cutin biosynthetic process	7.67E-04
30	GO:0009825: multidimensional cell growth	8.57E-04
31	GO:0010167: response to nitrate	8.57E-04
32	GO:0006518: peptide metabolic process	8.68E-04
33	GO:0006788: heme oxidation	8.68E-04
34	GO:0006696: ergosterol biosynthetic process	8.68E-04
35	GO:0015714: phosphoenolpyruvate transport	8.68E-04
36	GO:0006636: unsaturated fatty acid biosynthetic process	9.50E-04
37	GO:0009926: auxin polar transport	1.09E-03
38	GO:1901332: negative regulation of lateral root development	1.24E-03
39	GO:0071484: cellular response to light intensity	1.24E-03
40	GO:0080170: hydrogen peroxide transmembrane transport	1.24E-03
41	GO:0009650: UV protection	1.24E-03
42	GO:0016998: cell wall macromolecule catabolic process	1.27E-03
43	GO:0015713: phosphoglycerate transport	1.65E-03
44	GO:0010037: response to carbon dioxide	1.65E-03
45	GO:0015976: carbon utilization	1.65E-03
46	GO:0006183: GTP biosynthetic process	1.65E-03
47	GO:0045727: positive regulation of translation	1.65E-03
48	GO:2000122: negative regulation of stomatal complex development	1.65E-03
49	GO:0010305: leaf vascular tissue pattern formation	2.06E-03
50	GO:0010182: sugar mediated signaling pathway	2.06E-03
51	GO:0016120: carotene biosynthetic process	2.11E-03
52	GO:0006564: L-serine biosynthetic process	2.11E-03
53	GO:0010236: plastoquinone biosynthetic process	2.11E-03
54	GO:0045038: protein import into chloroplast thylakoid membrane	2.11E-03
55	GO:0030308: negative regulation of cell growth	2.11E-03
56	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.55E-03
57	GO:0010337: regulation of salicylic acid metabolic process	2.60E-03
58	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.60E-03
59	GO:0006561: proline biosynthetic process	2.60E-03
60	GO:0010405: arabinogalactan protein metabolic process	2.60E-03
61	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.60E-03
62	GO:0009913: epidermal cell differentiation	2.60E-03
63	GO:0006655: phosphatidylglycerol biosynthetic process	2.60E-03
64	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.60E-03
65	GO:0009416: response to light stimulus	2.71E-03
66	GO:0071555: cell wall organization	2.76E-03
67	GO:0006694: steroid biosynthetic process	3.12E-03
68	GO:0010189: vitamin E biosynthetic process	3.12E-03
69	GO:0010019: chloroplast-nucleus signaling pathway	3.12E-03
70	GO:1900057: positive regulation of leaf senescence	3.68E-03
71	GO:0010444: guard mother cell differentiation	3.68E-03
72	GO:0050829: defense response to Gram-negative bacterium	3.68E-03
73	GO:0009395: phospholipid catabolic process	3.68E-03
74	GO:0009772: photosynthetic electron transport in photosystem II	3.68E-03
75	GO:0016042: lipid catabolic process	4.19E-03
76	GO:0042255: ribosome assembly	4.27E-03
77	GO:0046620: regulation of organ growth	4.27E-03
78	GO:0006605: protein targeting	4.27E-03
79	GO:0009704: de-etiolation	4.27E-03
80	GO:2000070: regulation of response to water deprivation	4.27E-03
81	GO:0031540: regulation of anthocyanin biosynthetic process	4.27E-03
82	GO:0055075: potassium ion homeostasis	4.27E-03
83	GO:0008610: lipid biosynthetic process	4.27E-03
84	GO:0030091: protein repair	4.27E-03
85	GO:0010411: xyloglucan metabolic process	4.31E-03
86	GO:0015995: chlorophyll biosynthetic process	4.31E-03
87	GO:0006633: fatty acid biosynthetic process	4.38E-03
88	GO:0030244: cellulose biosynthetic process	4.77E-03
89	GO:0018298: protein-chromophore linkage	4.77E-03
90	GO:0032544: plastid translation	4.89E-03
91	GO:0009808: lignin metabolic process	4.89E-03
92	GO:0015996: chlorophyll catabolic process	4.89E-03
93	GO:0009827: plant-type cell wall modification	4.89E-03
94	GO:0007186: G-protein coupled receptor signaling pathway	4.89E-03
95	GO:0045490: pectin catabolic process	4.94E-03
96	GO:0010311: lateral root formation	5.01E-03
97	GO:0009834: plant-type secondary cell wall biogenesis	5.26E-03
98	GO:0090333: regulation of stomatal closure	5.54E-03
99	GO:0010206: photosystem II repair	5.54E-03
100	GO:0034765: regulation of ion transmembrane transport	5.54E-03
101	GO:0009637: response to blue light	6.04E-03
102	GO:0006032: chitin catabolic process	6.92E-03
103	GO:0009688: abscisic acid biosynthetic process	6.92E-03
104	GO:0048829: root cap development	6.92E-03
105	GO:0009734: auxin-activated signaling pathway	7.36E-03
106	GO:0009750: response to fructose	7.65E-03
107	GO:0018119: peptidyl-cysteine S-nitrosylation	7.65E-03
108	GO:0048765: root hair cell differentiation	7.65E-03
109	GO:0010015: root morphogenesis	7.65E-03
110	GO:0000038: very long-chain fatty acid metabolic process	7.65E-03
111	GO:0042546: cell wall biogenesis	8.11E-03
112	GO:0045037: protein import into chloroplast stroma	8.41E-03
113	GO:0006820: anion transport	8.41E-03
114	GO:0015706: nitrate transport	8.41E-03
115	GO:0009658: chloroplast organization	8.61E-03
116	GO:0010628: positive regulation of gene expression	9.20E-03
117	GO:0006006: glucose metabolic process	9.20E-03
118	GO:0010229: inflorescence development	9.20E-03
119	GO:0009718: anthocyanin-containing compound biosynthetic process	9.20E-03
120	GO:0009725: response to hormone	9.20E-03
121	GO:0019253: reductive pentose-phosphate cycle	1.00E-02
122	GO:0010540: basipetal auxin transport	1.00E-02
123	GO:0048467: gynoecium development	1.00E-02
124	GO:0009809: lignin biosynthetic process	1.05E-02
125	GO:0071732: cellular response to nitric oxide	1.09E-02
126	GO:0010053: root epidermal cell differentiation	1.09E-02
127	GO:0009225: nucleotide-sugar metabolic process	1.09E-02
128	GO:0006857: oligopeptide transport	1.13E-02
129	GO:0080167: response to karrikin	1.13E-02
130	GO:0042023: DNA endoreduplication	1.17E-02
131	GO:0006833: water transport	1.17E-02
132	GO:0010025: wax biosynthetic process	1.17E-02
133	GO:0006096: glycolytic process	1.25E-02
134	GO:0006487: protein N-linked glycosylation	1.26E-02
135	GO:0000027: ribosomal large subunit assembly	1.26E-02
136	GO:0055114: oxidation-reduction process	1.28E-02
137	GO:0045893: positive regulation of transcription, DNA-templated	1.29E-02
138	GO:0007017: microtubule-based process	1.35E-02
139	GO:0009768: photosynthesis, light harvesting in photosystem I	1.35E-02
140	GO:0019953: sexual reproduction	1.35E-02
141	GO:0003333: amino acid transmembrane transport	1.45E-02
142	GO:0031408: oxylipin biosynthetic process	1.45E-02
143	GO:0030245: cellulose catabolic process	1.54E-02
144	GO:0009409: response to cold	1.57E-02
145	GO:0009411: response to UV	1.64E-02
146	GO:0071369: cellular response to ethylene stimulus	1.64E-02
147	GO:0042127: regulation of cell proliferation	1.74E-02
148	GO:0019722: calcium-mediated signaling	1.74E-02
149	GO:0009306: protein secretion	1.74E-02
150	GO:0006810: transport	1.81E-02
151	GO:0005975: carbohydrate metabolic process	1.91E-02
152	GO:0042391: regulation of membrane potential	1.95E-02
153	GO:0034220: ion transmembrane transport	1.95E-02
154	GO:0000413: protein peptidyl-prolyl isomerization	1.95E-02
155	GO:0009741: response to brassinosteroid	2.05E-02
156	GO:0009958: positive gravitropism	2.05E-02
157	GO:0045489: pectin biosynthetic process	2.05E-02
158	GO:0042744: hydrogen peroxide catabolic process	2.14E-02
159	GO:0015986: ATP synthesis coupled proton transport	2.16E-02
160	GO:0000302: response to reactive oxygen species	2.38E-02
161	GO:0002229: defense response to oomycetes	2.38E-02
162	GO:0016132: brassinosteroid biosynthetic process	2.38E-02
163	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.38E-02
164	GO:0032502: developmental process	2.50E-02
165	GO:0007623: circadian rhythm	2.60E-02
166	GO:0071281: cellular response to iron ion	2.62E-02
167	GO:1901657: glycosyl compound metabolic process	2.62E-02
168	GO:0010252: auxin homeostasis	2.73E-02
169	GO:0007267: cell-cell signaling	2.85E-02
170	GO:0071805: potassium ion transmembrane transport	2.85E-02
171	GO:0006979: response to oxidative stress	3.03E-02
172	GO:0016126: sterol biosynthetic process	3.10E-02
173	GO:0009627: systemic acquired resistance	3.35E-02
174	GO:0042128: nitrate assimilation	3.35E-02
175	GO:0048573: photoperiodism, flowering	3.48E-02
176	GO:0009733: response to auxin	3.55E-02
177	GO:0009817: defense response to fungus, incompatible interaction	3.75E-02
178	GO:0000160: phosphorelay signal transduction system	3.88E-02
179	GO:0010218: response to far red light	4.01E-02
180	GO:0009407: toxin catabolic process	4.01E-02
181	GO:0009631: cold acclimation	4.15E-02
182	GO:0007568: aging	4.15E-02
183	GO:0010119: regulation of stomatal movement	4.15E-02
184	GO:0006865: amino acid transport	4.29E-02
185	GO:0034599: cellular response to oxidative stress	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0019843: rRNA binding	5.90E-06
9	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	9.47E-05
10	GO:0052689: carboxylic ester hydrolase activity	1.05E-04
11	GO:0030570: pectate lyase activity	1.21E-04
12	GO:0019210: kinase inhibitor activity	2.41E-04
13	GO:0045485: omega-6 fatty acid desaturase activity	2.41E-04
14	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.41E-04
15	GO:0000170: sphingosine hydroxylase activity	2.41E-04
16	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.41E-04
17	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.41E-04
18	GO:0016788: hydrolase activity, acting on ester bonds	3.49E-04
19	GO:0008289: lipid binding	4.18E-04
20	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.34E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	5.34E-04
22	GO:0003938: IMP dehydrogenase activity	5.34E-04
23	GO:0042284: sphingolipid delta-4 desaturase activity	5.34E-04
24	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.68E-04
25	GO:0050734: hydroxycinnamoyltransferase activity	8.68E-04
26	GO:0005528: FK506 binding	1.05E-03
27	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.18E-03
28	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.24E-03
29	GO:0016851: magnesium chelatase activity	1.24E-03
30	GO:0001872: (1->3)-beta-D-glucan binding	1.24E-03
31	GO:0015293: symporter activity	1.25E-03
32	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.31E-03
33	GO:0050378: UDP-glucuronate 4-epimerase activity	1.65E-03
34	GO:0004392: heme oxygenase (decyclizing) activity	1.65E-03
35	GO:0015120: phosphoglycerate transmembrane transporter activity	1.65E-03
36	GO:0010011: auxin binding	1.65E-03
37	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.65E-03
38	GO:0010328: auxin influx transmembrane transporter activity	1.65E-03
39	GO:0052793: pectin acetylesterase activity	1.65E-03
40	GO:0004506: squalene monooxygenase activity	1.65E-03
41	GO:0008381: mechanically-gated ion channel activity	2.11E-03
42	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.54E-03
43	GO:0016746: transferase activity, transferring acyl groups	2.56E-03
44	GO:0016688: L-ascorbate peroxidase activity	2.60E-03
45	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.60E-03
46	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.60E-03
47	GO:0004130: cytochrome-c peroxidase activity	2.60E-03
48	GO:0005242: inward rectifier potassium channel activity	3.12E-03
49	GO:0051920: peroxiredoxin activity	3.12E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.12E-03
51	GO:0016168: chlorophyll binding	3.87E-03
52	GO:0030674: protein binding, bridging	4.27E-03
53	GO:0016209: antioxidant activity	4.27E-03
54	GO:0052747: sinapyl alcohol dehydrogenase activity	4.27E-03
55	GO:0030247: polysaccharide binding	4.31E-03
56	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.31E-03
57	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.89E-03
58	GO:0015112: nitrate transmembrane transporter activity	6.21E-03
59	GO:0004568: chitinase activity	6.92E-03
60	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.41E-03
61	GO:0004022: alcohol dehydrogenase (NAD) activity	9.20E-03
62	GO:0004089: carbonate dehydratase activity	9.20E-03
63	GO:0004565: beta-galactosidase activity	9.20E-03
64	GO:0051287: NAD binding	9.44E-03
65	GO:0008266: poly(U) RNA binding	1.00E-02
66	GO:0008146: sulfotransferase activity	1.09E-02
67	GO:0003824: catalytic activity	1.10E-02
68	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.17E-02
69	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.17E-02
70	GO:0031409: pigment binding	1.17E-02
71	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.17E-02
72	GO:0004871: signal transducer activity	1.51E-02
73	GO:0022891: substrate-specific transmembrane transporter activity	1.64E-02
74	GO:0008810: cellulase activity	1.64E-02
75	GO:0003727: single-stranded RNA binding	1.74E-02
76	GO:0005249: voltage-gated potassium channel activity	1.95E-02
77	GO:0030551: cyclic nucleotide binding	1.95E-02
78	GO:0016829: lyase activity	2.04E-02
79	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.05E-02
80	GO:0050662: coenzyme binding	2.16E-02
81	GO:0004872: receptor activity	2.27E-02
82	GO:0000156: phosphorelay response regulator activity	2.62E-02
83	GO:0016791: phosphatase activity	2.73E-02
84	GO:0005200: structural constituent of cytoskeleton	2.85E-02
85	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.85E-02
86	GO:0016597: amino acid binding	2.98E-02
87	GO:0016413: O-acetyltransferase activity	2.98E-02
88	GO:0003735: structural constituent of ribosome	3.01E-02
89	GO:0015250: water channel activity	3.10E-02
90	GO:0042802: identical protein binding	3.30E-02
91	GO:0008375: acetylglucosaminyltransferase activity	3.35E-02
92	GO:0005215: transporter activity	3.47E-02
93	GO:0102483: scopolin beta-glucosidase activity	3.48E-02
94	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.61E-02
95	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.75E-02
96	GO:0008168: methyltransferase activity	3.87E-02
97	GO:0004601: peroxidase activity	4.01E-02
98	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.01E-02
99	GO:0004222: metalloendopeptidase activity	4.01E-02
100	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.15E-02
101	GO:0016491: oxidoreductase activity	4.46E-02
102	GO:0003993: acid phosphatase activity	4.57E-02
103	GO:0050660: flavin adenine dinucleotide binding	4.63E-02
104	GO:0008422: beta-glucosidase activity	4.71E-02
105	GO:0050661: NADP binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	4.34E-19
4	GO:0009507: chloroplast	7.87E-14
5	GO:0009534: chloroplast thylakoid	1.15E-13
6	GO:0048046: apoplast	1.12E-10
7	GO:0009579: thylakoid	5.15E-09
8	GO:0009941: chloroplast envelope	2.88E-07
9	GO:0009570: chloroplast stroma	2.38E-06
10	GO:0010319: stromule	2.48E-05
11	GO:0009543: chloroplast thylakoid lumen	7.23E-05
12	GO:0005618: cell wall	7.50E-05
13	GO:0016021: integral component of membrane	9.36E-05
14	GO:0005886: plasma membrane	3.24E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.27E-04
16	GO:0005576: extracellular region	4.07E-04
17	GO:0031225: anchored component of membrane	4.43E-04
18	GO:0030095: chloroplast photosystem II	7.67E-04
19	GO:0016020: membrane	8.38E-04
20	GO:0009528: plastid inner membrane	8.68E-04
21	GO:0010007: magnesium chelatase complex	8.68E-04
22	GO:0015630: microtubule cytoskeleton	1.24E-03
23	GO:0009505: plant-type cell wall	1.29E-03
24	GO:0046658: anchored component of plasma membrane	1.37E-03
25	GO:0009527: plastid outer membrane	1.65E-03
26	GO:0031969: chloroplast membrane	2.42E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.60E-03
28	GO:0010287: plastoglobule	3.06E-03
29	GO:0009986: cell surface	3.68E-03
30	GO:0008180: COP9 signalosome	5.54E-03
31	GO:0031977: thylakoid lumen	7.18E-03
32	GO:0009506: plasmodesma	9.32E-03
33	GO:0005840: ribosome	1.01E-02
34	GO:0030076: light-harvesting complex	1.09E-02
35	GO:0009536: plastid	1.33E-02
36	GO:0009654: photosystem II oxygen evolving complex	1.35E-02
37	GO:0009532: plastid stroma	1.45E-02
38	GO:0009706: chloroplast inner membrane	1.50E-02
39	GO:0009522: photosystem I	2.16E-02
40	GO:0009523: photosystem II	2.27E-02
41	GO:0019898: extrinsic component of membrane	2.27E-02
42	GO:0032580: Golgi cisterna membrane	2.73E-02
43	GO:0019005: SCF ubiquitin ligase complex	3.75E-02
44	GO:0009707: chloroplast outer membrane	3.75E-02
45	GO:0000151: ubiquitin ligase complex	3.75E-02
46	GO:0015934: large ribosomal subunit	4.15E-02