Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G33800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0042407: cristae formation0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
9GO:0032544: plastid translation5.77E-11
10GO:0006412: translation6.16E-11
11GO:0009773: photosynthetic electron transport in photosystem I6.05E-08
12GO:0009735: response to cytokinin3.08E-07
13GO:0015979: photosynthesis6.57E-07
14GO:0009658: chloroplast organization1.46E-06
15GO:0015976: carbon utilization1.46E-06
16GO:0042254: ribosome biogenesis1.58E-06
17GO:0030388: fructose 1,6-bisphosphate metabolic process9.99E-06
18GO:0006000: fructose metabolic process3.40E-05
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.31E-05
20GO:0042742: defense response to bacterium7.55E-05
21GO:0010037: response to carbon dioxide1.27E-04
22GO:2000122: negative regulation of stomatal complex development1.27E-04
23GO:0006546: glycine catabolic process1.27E-04
24GO:0019253: reductive pentose-phosphate cycle1.80E-04
25GO:0010207: photosystem II assembly1.80E-04
26GO:0009817: defense response to fungus, incompatible interaction3.08E-04
27GO:0071277: cellular response to calcium ion4.76E-04
28GO:0042371: vitamin K biosynthetic process4.76E-04
29GO:0071588: hydrogen peroxide mediated signaling pathway4.76E-04
30GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.76E-04
31GO:0060627: regulation of vesicle-mediated transport4.76E-04
32GO:1904966: positive regulation of vitamin E biosynthetic process4.76E-04
33GO:0010442: guard cell morphogenesis4.76E-04
34GO:1901599: (-)-pinoresinol biosynthetic process4.76E-04
35GO:1904964: positive regulation of phytol biosynthetic process4.76E-04
36GO:0016117: carotenoid biosynthetic process5.82E-04
37GO:0000413: protein peptidyl-prolyl isomerization6.44E-04
38GO:0006002: fructose 6-phosphate metabolic process7.27E-04
39GO:0006810: transport8.57E-04
40GO:0045490: pectin catabolic process9.36E-04
41GO:2000123: positive regulation of stomatal complex development1.02E-03
42GO:0010424: DNA methylation on cytosine within a CG sequence1.02E-03
43GO:0043039: tRNA aminoacylation1.02E-03
44GO:0052541: plant-type cell wall cellulose metabolic process1.02E-03
45GO:1902326: positive regulation of chlorophyll biosynthetic process1.02E-03
46GO:0010069: zygote asymmetric cytokinesis in embryo sac1.02E-03
47GO:0006423: cysteinyl-tRNA aminoacylation1.02E-03
48GO:0044208: 'de novo' AMP biosynthetic process1.02E-03
49GO:0006949: syncytium formation1.19E-03
50GO:0007267: cell-cell signaling1.27E-03
51GO:0006869: lipid transport1.29E-03
52GO:0006415: translational termination1.38E-03
53GO:0018119: peptidyl-cysteine S-nitrosylation1.38E-03
54GO:0010027: thylakoid membrane organization1.47E-03
55GO:0045037: protein import into chloroplast stroma1.57E-03
56GO:0006065: UDP-glucuronate biosynthetic process1.67E-03
57GO:0090506: axillary shoot meristem initiation1.67E-03
58GO:0006518: peptide metabolic process1.67E-03
59GO:0071492: cellular response to UV-A1.67E-03
60GO:0006696: ergosterol biosynthetic process1.67E-03
61GO:0006094: gluconeogenesis1.79E-03
62GO:0005986: sucrose biosynthetic process1.79E-03
63GO:0010020: chloroplast fission2.02E-03
64GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.42E-03
65GO:0007231: osmosensory signaling pathway2.42E-03
66GO:0006241: CTP biosynthetic process2.42E-03
67GO:0006424: glutamyl-tRNA aminoacylation2.42E-03
68GO:0006165: nucleoside diphosphate phosphorylation2.42E-03
69GO:0006228: UTP biosynthetic process2.42E-03
70GO:0043572: plastid fission2.42E-03
71GO:0006071: glycerol metabolic process2.52E-03
72GO:0006418: tRNA aminoacylation for protein translation3.09E-03
73GO:0009790: embryo development3.23E-03
74GO:0009956: radial pattern formation3.26E-03
75GO:0071486: cellular response to high light intensity3.26E-03
76GO:0019464: glycine decarboxylation via glycine cleavage system3.26E-03
77GO:0009765: photosynthesis, light harvesting3.26E-03
78GO:0006183: GTP biosynthetic process3.26E-03
79GO:0033500: carbohydrate homeostasis3.26E-03
80GO:2000038: regulation of stomatal complex development3.26E-03
81GO:0061077: chaperone-mediated protein folding3.40E-03
82GO:0045454: cell redox homeostasis4.06E-03
83GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.06E-03
84GO:0009294: DNA mediated transformation4.06E-03
85GO:0031365: N-terminal protein amino acid modification4.18E-03
86GO:0016123: xanthophyll biosynthetic process4.18E-03
87GO:0010375: stomatal complex patterning4.18E-03
88GO:0032543: mitochondrial translation4.18E-03
89GO:0016120: carotene biosynthetic process4.18E-03
90GO:0019722: calcium-mediated signaling4.42E-03
91GO:0042549: photosystem II stabilization5.18E-03
92GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.18E-03
93GO:0006796: phosphate-containing compound metabolic process5.18E-03
94GO:0016554: cytidine to uridine editing5.18E-03
95GO:0010190: cytochrome b6f complex assembly5.18E-03
96GO:0042335: cuticle development5.18E-03
97GO:0010019: chloroplast-nucleus signaling pathway6.24E-03
98GO:0048444: floral organ morphogenesis6.24E-03
99GO:0010555: response to mannitol6.24E-03
100GO:0030643: cellular phosphate ion homeostasis6.24E-03
101GO:0042372: phylloquinone biosynthetic process6.24E-03
102GO:0010067: procambium histogenesis6.24E-03
103GO:0006694: steroid biosynthetic process6.24E-03
104GO:0055114: oxidation-reduction process7.30E-03
105GO:0050790: regulation of catalytic activity7.39E-03
106GO:0010583: response to cyclopentenone7.39E-03
107GO:0009828: plant-type cell wall loosening8.39E-03
108GO:0006875: cellular metal ion homeostasis8.60E-03
109GO:0030091: protein repair8.60E-03
110GO:0009819: drought recovery8.60E-03
111GO:0009642: response to light intensity8.60E-03
112GO:0009704: de-etiolation8.60E-03
113GO:0009808: lignin metabolic process9.88E-03
114GO:0006526: arginine biosynthetic process9.88E-03
115GO:0009657: plastid organization9.88E-03
116GO:0006189: 'de novo' IMP biosynthetic process1.12E-02
117GO:0048589: developmental growth1.12E-02
118GO:0010206: photosystem II repair1.12E-02
119GO:0090333: regulation of stomatal closure1.12E-02
120GO:0010411: xyloglucan metabolic process1.18E-02
121GO:0043067: regulation of programmed cell death1.26E-02
122GO:0006349: regulation of gene expression by genetic imprinting1.26E-02
123GO:1900865: chloroplast RNA modification1.26E-02
124GO:0018298: protein-chromophore linkage1.31E-02
125GO:0009409: response to cold1.39E-02
126GO:0043069: negative regulation of programmed cell death1.41E-02
127GO:0009870: defense response signaling pathway, resistance gene-dependent1.41E-02
128GO:0010119: regulation of stomatal movement1.52E-02
129GO:0010216: maintenance of DNA methylation1.56E-02
130GO:0010015: root morphogenesis1.56E-02
131GO:0006816: calcium ion transport1.56E-02
132GO:0009089: lysine biosynthetic process via diaminopimelate1.56E-02
133GO:0043085: positive regulation of catalytic activity1.56E-02
134GO:0009807: lignan biosynthetic process1.56E-02
135GO:0006633: fatty acid biosynthetic process1.59E-02
136GO:0034599: cellular response to oxidative stress1.75E-02
137GO:0009793: embryo development ending in seed dormancy1.81E-02
138GO:0050826: response to freezing1.88E-02
139GO:0009725: response to hormone1.88E-02
140GO:0009767: photosynthetic electron transport chain1.88E-02
141GO:0006006: glucose metabolic process1.88E-02
142GO:0071555: cell wall organization1.99E-02
143GO:0006631: fatty acid metabolic process1.99E-02
144GO:0010223: secondary shoot formation2.05E-02
145GO:0009934: regulation of meristem structural organization2.05E-02
146GO:0010143: cutin biosynthetic process2.05E-02
147GO:0009933: meristem structural organization2.05E-02
148GO:0051707: response to other organism2.16E-02
149GO:0005985: sucrose metabolic process2.23E-02
150GO:0070588: calcium ion transmembrane transport2.23E-02
151GO:0042546: cell wall biogenesis2.24E-02
152GO:0006636: unsaturated fatty acid biosynthetic process2.41E-02
153GO:0019344: cysteine biosynthetic process2.59E-02
154GO:0000027: ribosomal large subunit assembly2.59E-02
155GO:0007010: cytoskeleton organization2.59E-02
156GO:0009664: plant-type cell wall organization2.71E-02
157GO:0051302: regulation of cell division2.78E-02
158GO:0010026: trichome differentiation2.78E-02
159GO:0009768: photosynthesis, light harvesting in photosystem I2.78E-02
160GO:0007017: microtubule-based process2.78E-02
161GO:0009826: unidimensional cell growth2.95E-02
162GO:0016998: cell wall macromolecule catabolic process2.97E-02
163GO:0048278: vesicle docking2.97E-02
164GO:0080092: regulation of pollen tube growth3.17E-02
165GO:0019748: secondary metabolic process3.17E-02
166GO:0030245: cellulose catabolic process3.17E-02
167GO:0001944: vasculature development3.37E-02
168GO:0009411: response to UV3.37E-02
169GO:0006508: proteolysis3.38E-02
170GO:0010089: xylem development3.58E-02
171GO:0006284: base-excision repair3.58E-02
172GO:0010087: phloem or xylem histogenesis4.01E-02
173GO:0042545: cell wall modification4.01E-02
174GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.21E-02
175GO:0010197: polar nucleus fusion4.23E-02
176GO:0006520: cellular amino acid metabolic process4.23E-02
177GO:0006662: glycerol ether metabolic process4.23E-02
178GO:0010305: leaf vascular tissue pattern formation4.23E-02
179GO:0005975: carbohydrate metabolic process4.31E-02
180GO:0061025: membrane fusion4.45E-02
181GO:0019252: starch biosynthetic process4.68E-02
182GO:0016132: brassinosteroid biosynthetic process4.91E-02
183GO:0000302: response to reactive oxygen species4.91E-02
184GO:0071554: cell wall organization or biogenesis4.91E-02
185GO:0002229: defense response to oomycetes4.91E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
4GO:0050614: delta24-sterol reductase activity0.00E+00
5GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
6GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
7GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
8GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0045435: lycopene epsilon cyclase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0004822: isoleucine-tRNA ligase activity0.00E+00
15GO:0019843: rRNA binding4.42E-16
16GO:0003735: structural constituent of ribosome1.15E-12
17GO:0051920: peroxiredoxin activity1.13E-07
18GO:0016209: antioxidant activity3.99E-07
19GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.99E-06
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.28E-05
21GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor3.40E-05
22GO:0016149: translation release factor activity, codon specific7.31E-05
23GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.27E-04
24GO:0004089: carbonate dehydratase activity1.51E-04
25GO:0030570: pectate lyase activity4.71E-04
26GO:0042349: guiding stereospecific synthesis activity4.76E-04
27GO:0004018: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity4.76E-04
28GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.76E-04
29GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.76E-04
30GO:0070626: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity4.76E-04
31GO:0004560: alpha-L-fucosidase activity4.76E-04
32GO:0080132: fatty acid alpha-hydroxylase activity4.76E-04
33GO:0004831: tyrosine-tRNA ligase activity4.76E-04
34GO:0015088: copper uptake transmembrane transporter activity4.76E-04
35GO:0051996: squalene synthase activity4.76E-04
36GO:0003747: translation release factor activity8.70E-04
37GO:0008889: glycerophosphodiester phosphodiesterase activity8.70E-04
38GO:0008967: phosphoglycolate phosphatase activity1.02E-03
39GO:0042389: omega-3 fatty acid desaturase activity1.02E-03
40GO:0004047: aminomethyltransferase activity1.02E-03
41GO:0004817: cysteine-tRNA ligase activity1.02E-03
42GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.02E-03
43GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.02E-03
44GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.02E-03
45GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.02E-03
46GO:0016168: chlorophyll binding1.58E-03
47GO:0070402: NADPH binding1.67E-03
48GO:0003979: UDP-glucose 6-dehydrogenase activity1.67E-03
49GO:0005504: fatty acid binding1.67E-03
50GO:0050734: hydroxycinnamoyltransferase activity1.67E-03
51GO:0002161: aminoacyl-tRNA editing activity1.67E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.67E-03
53GO:0030267: glyoxylate reductase (NADP) activity1.67E-03
54GO:0043023: ribosomal large subunit binding2.42E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity2.42E-03
56GO:0004550: nucleoside diphosphate kinase activity2.42E-03
57GO:0030145: manganese ion binding2.49E-03
58GO:0005528: FK506 binding2.80E-03
59GO:0008289: lipid binding3.14E-03
60GO:0045430: chalcone isomerase activity3.26E-03
61GO:1990137: plant seed peroxidase activity3.26E-03
62GO:0043495: protein anchor3.26E-03
63GO:0022891: substrate-specific transmembrane transporter activity4.06E-03
64GO:0008725: DNA-3-methyladenine glycosylase activity4.18E-03
65GO:0016773: phosphotransferase activity, alcohol group as acceptor4.18E-03
66GO:0004040: amidase activity4.18E-03
67GO:0004812: aminoacyl-tRNA ligase activity4.79E-03
68GO:0051287: NAD binding4.94E-03
69GO:0008200: ion channel inhibitor activity5.18E-03
70GO:0080030: methyl indole-3-acetate esterase activity5.18E-03
71GO:0016208: AMP binding5.18E-03
72GO:0016462: pyrophosphatase activity5.18E-03
73GO:0004130: cytochrome-c peroxidase activity5.18E-03
74GO:0016688: L-ascorbate peroxidase activity5.18E-03
75GO:0042578: phosphoric ester hydrolase activity5.18E-03
76GO:0003924: GTPase activity5.86E-03
77GO:0005509: calcium ion binding6.10E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.24E-03
79GO:0051753: mannan synthase activity6.24E-03
80GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.24E-03
81GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.24E-03
82GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.24E-03
83GO:0003886: DNA (cytosine-5-)-methyltransferase activity6.24E-03
84GO:0009055: electron carrier activity6.63E-03
85GO:0016762: xyloglucan:xyloglucosyl transferase activity6.91E-03
86GO:0048038: quinone binding6.91E-03
87GO:0045735: nutrient reservoir activity7.02E-03
88GO:0008235: metalloexopeptidase activity7.39E-03
89GO:0004427: inorganic diphosphatase activity7.39E-03
90GO:0019899: enzyme binding7.39E-03
91GO:0004601: peroxidase activity8.11E-03
92GO:0030599: pectinesterase activity8.24E-03
93GO:0052747: sinapyl alcohol dehydrogenase activity8.60E-03
94GO:0004033: aldo-keto reductase (NADP) activity8.60E-03
95GO:0005200: structural constituent of cytoskeleton8.92E-03
96GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.88E-03
97GO:0016798: hydrolase activity, acting on glycosyl bonds1.18E-02
98GO:0005381: iron ion transmembrane transporter activity1.26E-02
99GO:0008047: enzyme activator activity1.41E-02
100GO:0004222: metalloendopeptidase activity1.45E-02
101GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.52E-02
102GO:0004177: aminopeptidase activity1.56E-02
103GO:0005089: Rho guanyl-nucleotide exchange factor activity1.56E-02
104GO:0045551: cinnamyl-alcohol dehydrogenase activity1.72E-02
105GO:0000049: tRNA binding1.72E-02
106GO:0031072: heat shock protein binding1.88E-02
107GO:0005262: calcium channel activity1.88E-02
108GO:0004565: beta-galactosidase activity1.88E-02
109GO:0008266: poly(U) RNA binding2.05E-02
110GO:0004185: serine-type carboxypeptidase activity2.16E-02
111GO:0031409: pigment binding2.41E-02
112GO:0042802: identical protein binding2.42E-02
113GO:0004857: enzyme inhibitor activity2.59E-02
114GO:0043424: protein histidine kinase binding2.78E-02
115GO:0008324: cation transmembrane transporter activity2.78E-02
116GO:0004176: ATP-dependent peptidase activity2.97E-02
117GO:0033612: receptor serine/threonine kinase binding2.97E-02
118GO:0016788: hydrolase activity, acting on ester bonds3.17E-02
119GO:0045330: aspartyl esterase activity3.22E-02
120GO:0008810: cellulase activity3.37E-02
121GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.55E-02
122GO:0005525: GTP binding3.67E-02
123GO:0004650: polygalacturonase activity3.77E-02
124GO:0047134: protein-disulfide reductase activity3.79E-02
125GO:0005102: receptor binding3.79E-02
126GO:0005199: structural constituent of cell wall4.23E-02
127GO:0004791: thioredoxin-disulfide reductase activity4.45E-02
128GO:0052689: carboxylic ester hydrolase activity4.56E-02
129GO:0004872: receptor activity4.68E-02
130GO:0019901: protein kinase binding4.68E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
4GO:0009507: chloroplast2.79E-52
5GO:0009570: chloroplast stroma5.42E-42
6GO:0009941: chloroplast envelope1.52E-29
7GO:0009535: chloroplast thylakoid membrane9.98E-28
8GO:0009579: thylakoid4.14E-23
9GO:0048046: apoplast4.52E-18
10GO:0005840: ribosome2.05E-12
11GO:0009543: chloroplast thylakoid lumen7.62E-12
12GO:0009534: chloroplast thylakoid2.24E-10
13GO:0046658: anchored component of plasma membrane2.80E-10
14GO:0031977: thylakoid lumen6.54E-10
15GO:0031225: anchored component of membrane1.23E-08
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.35E-08
17GO:0009505: plant-type cell wall4.19E-08
18GO:0009654: photosystem II oxygen evolving complex6.84E-07
19GO:0000311: plastid large ribosomal subunit4.59E-06
20GO:0005618: cell wall1.37E-05
21GO:0015934: large ribosomal subunit4.31E-05
22GO:0009706: chloroplast inner membrane4.98E-05
23GO:0019898: extrinsic component of membrane8.96E-05
24GO:0005576: extracellular region9.04E-05
25GO:0009536: plastid1.59E-04
26GO:0010319: stromule1.61E-04
27GO:0030095: chloroplast photosystem II1.80E-04
28GO:0042651: thylakoid membrane3.28E-04
29GO:0009344: nitrite reductase complex [NAD(P)H]4.76E-04
30GO:0009547: plastid ribosome4.76E-04
31GO:0042170: plastid membrane1.02E-03
32GO:0005853: eukaryotic translation elongation factor 1 complex1.67E-03
33GO:0031012: extracellular matrix1.79E-03
34GO:0005960: glycine cleavage complex2.42E-03
35GO:0031969: chloroplast membrane2.95E-03
36GO:0031897: Tic complex3.26E-03
37GO:0022626: cytosolic ribosome4.65E-03
38GO:0010168: ER body5.18E-03
39GO:0016020: membrane5.40E-03
40GO:0009523: photosystem II6.45E-03
41GO:0009533: chloroplast stromal thylakoid7.39E-03
42GO:0009539: photosystem II reaction center9.88E-03
43GO:0005811: lipid particle9.88E-03
44GO:0010287: plastoglobule1.11E-02
45GO:0045298: tubulin complex1.12E-02
46GO:0016324: apical plasma membrane1.41E-02
47GO:0000312: plastid small ribosomal subunit2.05E-02
48GO:0030076: light-harvesting complex2.23E-02
49GO:0005875: microtubule associated complex2.41E-02
50GO:0015935: small ribosomal subunit2.97E-02
51GO:0009532: plastid stroma2.97E-02
52GO:0005874: microtubule3.87E-02
53GO:0022625: cytosolic large ribosomal subunit4.29E-02
54GO:0009506: plasmodesma4.32E-02
55GO:0009522: photosystem I4.45E-02
56GO:0009504: cell plate4.68E-02
Gene type



Gene DE type