Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G33255

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0009773: photosynthetic electron transport in photosystem I7.00E-12
8GO:0015979: photosynthesis5.58E-07
9GO:0030388: fructose 1,6-bisphosphate metabolic process9.54E-06
10GO:0006000: fructose metabolic process3.26E-05
11GO:0032544: plastid translation3.30E-05
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.03E-05
13GO:0006810: transport7.42E-05
14GO:2000122: negative regulation of stomatal complex development1.23E-04
15GO:0006546: glycine catabolic process1.23E-04
16GO:0010037: response to carbon dioxide1.23E-04
17GO:0019676: ammonia assimilation cycle1.23E-04
18GO:0015976: carbon utilization1.23E-04
19GO:0007267: cell-cell signaling1.51E-04
20GO:0010207: photosystem II assembly1.71E-04
21GO:0019253: reductive pentose-phosphate cycle1.71E-04
22GO:0045454: cell redox homeostasis2.44E-04
23GO:0018298: protein-chromophore linkage2.91E-04
24GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.64E-04
25GO:0010442: guard cell morphogenesis4.64E-04
26GO:0071370: cellular response to gibberellin stimulus4.64E-04
27GO:0071277: cellular response to calcium ion4.64E-04
28GO:0071588: hydrogen peroxide mediated signaling pathway4.64E-04
29GO:0019722: calcium-mediated signaling5.02E-04
30GO:0016117: carotenoid biosynthetic process5.57E-04
31GO:0042335: cuticle development6.16E-04
32GO:0006002: fructose 6-phosphate metabolic process7.02E-04
33GO:0052541: plant-type cell wall cellulose metabolic process1.00E-03
34GO:0015786: UDP-glucose transport1.00E-03
35GO:0097054: L-glutamate biosynthetic process1.00E-03
36GO:2000123: positive regulation of stomatal complex development1.00E-03
37GO:0009735: response to cytokinin1.18E-03
38GO:0006869: lipid transport1.20E-03
39GO:0043085: positive regulation of catalytic activity1.33E-03
40GO:0006415: translational termination1.33E-03
41GO:0018119: peptidyl-cysteine S-nitrosylation1.33E-03
42GO:0010581: regulation of starch biosynthetic process1.63E-03
43GO:0071492: cellular response to UV-A1.63E-03
44GO:0006696: ergosterol biosynthetic process1.63E-03
45GO:0015783: GDP-fucose transport1.63E-03
46GO:0090506: axillary shoot meristem initiation1.63E-03
47GO:0006094: gluconeogenesis1.73E-03
48GO:0009767: photosynthetic electron transport chain1.73E-03
49GO:0005986: sucrose biosynthetic process1.73E-03
50GO:0009658: chloroplast organization1.89E-03
51GO:0010020: chloroplast fission1.95E-03
52GO:0005985: sucrose metabolic process2.19E-03
53GO:0042742: defense response to bacterium2.34E-03
54GO:0071555: cell wall organization2.34E-03
55GO:0006537: glutamate biosynthetic process2.37E-03
56GO:0006241: CTP biosynthetic process2.37E-03
57GO:0072334: UDP-galactose transmembrane transport2.37E-03
58GO:0006168: adenine salvage2.37E-03
59GO:0006165: nucleoside diphosphate phosphorylation2.37E-03
60GO:0006228: UTP biosynthetic process2.37E-03
61GO:0043572: plastid fission2.37E-03
62GO:0006166: purine ribonucleoside salvage2.37E-03
63GO:0007231: osmosensory signaling pathway2.37E-03
64GO:0016051: carbohydrate biosynthetic process2.67E-03
65GO:0009768: photosynthesis, light harvesting in photosystem I2.99E-03
66GO:0019464: glycine decarboxylation via glycine cleavage system3.18E-03
67GO:0009765: photosynthesis, light harvesting3.18E-03
68GO:0006183: GTP biosynthetic process3.18E-03
69GO:0033500: carbohydrate homeostasis3.18E-03
70GO:0045727: positive regulation of translation3.18E-03
71GO:0031122: cytoplasmic microtubule organization3.18E-03
72GO:2000038: regulation of stomatal complex development3.18E-03
73GO:0006542: glutamine biosynthetic process3.18E-03
74GO:0071486: cellular response to high light intensity3.18E-03
75GO:0061077: chaperone-mediated protein folding3.28E-03
76GO:0055114: oxidation-reduction process3.44E-03
77GO:0080092: regulation of pollen tube growth3.59E-03
78GO:0045490: pectin catabolic process3.95E-03
79GO:0080110: sporopollenin biosynthetic process4.08E-03
80GO:0010375: stomatal complex patterning4.08E-03
81GO:0046785: microtubule polymerization4.08E-03
82GO:0006564: L-serine biosynthetic process4.08E-03
83GO:0016120: carotene biosynthetic process4.08E-03
84GO:0006656: phosphatidylcholine biosynthetic process4.08E-03
85GO:0031365: N-terminal protein amino acid modification4.08E-03
86GO:0016123: xanthophyll biosynthetic process4.08E-03
87GO:0044209: AMP salvage4.08E-03
88GO:0009644: response to high light intensity4.09E-03
89GO:0009409: response to cold4.81E-03
90GO:0000271: polysaccharide biosynthetic process5.00E-03
91GO:0000413: protein peptidyl-prolyl isomerization5.00E-03
92GO:0016554: cytidine to uridine editing5.05E-03
93GO:0010190: cytochrome b6f complex assembly5.05E-03
94GO:0009643: photosynthetic acclimation5.05E-03
95GO:0018258: protein O-linked glycosylation via hydroxyproline5.05E-03
96GO:0010405: arabinogalactan protein metabolic process5.05E-03
97GO:0042549: photosystem II stabilization5.05E-03
98GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.05E-03
99GO:0045489: pectin biosynthetic process5.39E-03
100GO:0009955: adaxial/abaxial pattern specification6.09E-03
101GO:0042372: phylloquinone biosynthetic process6.09E-03
102GO:0045926: negative regulation of growth6.09E-03
103GO:0010067: procambium histogenesis6.09E-03
104GO:1901259: chloroplast rRNA processing6.09E-03
105GO:0010019: chloroplast-nucleus signaling pathway6.09E-03
106GO:0010555: response to mannitol6.09E-03
107GO:0009645: response to low light intensity stimulus7.20E-03
108GO:0010090: trichome morphogenesis7.60E-03
109GO:0042254: ribosome biogenesis7.91E-03
110GO:0007155: cell adhesion8.39E-03
111GO:0009819: drought recovery8.39E-03
112GO:0009642: response to light intensity8.39E-03
113GO:0009704: de-etiolation8.39E-03
114GO:0019430: removal of superoxide radicals9.63E-03
115GO:0009657: plastid organization9.63E-03
116GO:0017004: cytochrome complex assembly9.63E-03
117GO:0090305: nucleic acid phosphodiester bond hydrolysis1.09E-02
118GO:0010206: photosystem II repair1.09E-02
119GO:0090333: regulation of stomatal closure1.09E-02
120GO:0006754: ATP biosynthetic process1.09E-02
121GO:0048589: developmental growth1.09E-02
122GO:0010411: xyloglucan metabolic process1.14E-02
123GO:1900865: chloroplast RNA modification1.23E-02
124GO:0010380: regulation of chlorophyll biosynthetic process1.23E-02
125GO:0009817: defense response to fungus, incompatible interaction1.27E-02
126GO:0019538: protein metabolic process1.37E-02
127GO:0043069: negative regulation of programmed cell death1.37E-02
128GO:0010119: regulation of stomatal movement1.47E-02
129GO:0009416: response to light stimulus1.49E-02
130GO:0000038: very long-chain fatty acid metabolic process1.52E-02
131GO:0019684: photosynthesis, light reaction1.52E-02
132GO:0006633: fatty acid biosynthetic process1.52E-02
133GO:0009089: lysine biosynthetic process via diaminopimelate1.52E-02
134GO:0006816: calcium ion transport1.52E-02
135GO:0000272: polysaccharide catabolic process1.52E-02
136GO:0005975: carbohydrate metabolic process1.63E-02
137GO:0006790: sulfur compound metabolic process1.68E-02
138GO:0006820: anion transport1.68E-02
139GO:0034599: cellular response to oxidative stress1.68E-02
140GO:0007623: circadian rhythm1.71E-02
141GO:0006006: glucose metabolic process1.84E-02
142GO:0050826: response to freezing1.84E-02
143GO:0009725: response to hormone1.84E-02
144GO:0006631: fatty acid metabolic process1.92E-02
145GO:0010143: cutin biosynthetic process2.00E-02
146GO:0010223: secondary shoot formation2.00E-02
147GO:0009744: response to sucrose2.08E-02
148GO:0042546: cell wall biogenesis2.16E-02
149GO:0009969: xyloglucan biosynthetic process2.17E-02
150GO:0070588: calcium ion transmembrane transport2.17E-02
151GO:0046854: phosphatidylinositol phosphorylation2.17E-02
152GO:0055085: transmembrane transport2.24E-02
153GO:0006636: unsaturated fatty acid biosynthetic process2.35E-02
154GO:0009833: plant-type primary cell wall biogenesis2.35E-02
155GO:0006071: glycerol metabolic process2.35E-02
156GO:0006833: water transport2.35E-02
157GO:0019762: glucosinolate catabolic process2.35E-02
158GO:0000027: ribosomal large subunit assembly2.53E-02
159GO:0007010: cytoskeleton organization2.53E-02
160GO:0006487: protein N-linked glycosylation2.53E-02
161GO:0019344: cysteine biosynthetic process2.53E-02
162GO:0006418: tRNA aminoacylation for protein translation2.71E-02
163GO:0010026: trichome differentiation2.71E-02
164GO:0007017: microtubule-based process2.71E-02
165GO:0016998: cell wall macromolecule catabolic process2.90E-02
166GO:0030245: cellulose catabolic process3.09E-02
167GO:0016226: iron-sulfur cluster assembly3.09E-02
168GO:0019748: secondary metabolic process3.09E-02
169GO:0009294: DNA mediated transformation3.29E-02
170GO:0001944: vasculature development3.29E-02
171GO:0010584: pollen exine formation3.49E-02
172GO:0010089: xylem development3.49E-02
173GO:0042545: cell wall modification3.87E-02
174GO:0042631: cellular response to water deprivation3.91E-02
175GO:0080022: primary root development3.91E-02
176GO:0034220: ion transmembrane transport3.91E-02
177GO:0010087: phloem or xylem histogenesis3.91E-02
178GO:0006662: glycerol ether metabolic process4.12E-02
179GO:0009741: response to brassinosteroid4.12E-02
180GO:0009742: brassinosteroid mediated signaling pathway4.22E-02
181GO:0019252: starch biosynthetic process4.56E-02
182GO:0000302: response to reactive oxygen species4.78E-02
183GO:0071554: cell wall organization or biogenesis4.78E-02
184GO:0002229: defense response to oomycetes4.78E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
3GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0045435: lycopene epsilon cyclase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
12GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
13GO:0051920: peroxiredoxin activity1.05E-07
14GO:0016209: antioxidant activity3.68E-07
15GO:0019843: rRNA binding8.89E-06
16GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.54E-06
17GO:0016149: translation release factor activity, codon specific7.03E-05
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.21E-04
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.23E-04
20GO:0016168: chlorophyll binding2.04E-04
21GO:0005528: FK506 binding2.73E-04
22GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.59E-04
23GO:0004560: alpha-L-fucosidase activity4.64E-04
24GO:0008568: microtubule-severing ATPase activity4.64E-04
25GO:0080132: fatty acid alpha-hydroxylase activity4.64E-04
26GO:0051996: squalene synthase activity4.64E-04
27GO:0016041: glutamate synthase (ferredoxin) activity4.64E-04
28GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.64E-04
29GO:0003747: translation release factor activity8.40E-04
30GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.00E-03
31GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.00E-03
32GO:0000234: phosphoethanolamine N-methyltransferase activity1.00E-03
33GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.00E-03
34GO:0008967: phosphoglycolate phosphatase activity1.00E-03
35GO:0042389: omega-3 fatty acid desaturase activity1.00E-03
36GO:0010297: heteropolysaccharide binding1.00E-03
37GO:0004617: phosphoglycerate dehydrogenase activity1.00E-03
38GO:0004047: aminomethyltransferase activity1.00E-03
39GO:0008047: enzyme activator activity1.15E-03
40GO:0005089: Rho guanyl-nucleotide exchange factor activity1.33E-03
41GO:0005504: fatty acid binding1.63E-03
42GO:0050734: hydroxycinnamoyltransferase activity1.63E-03
43GO:0003913: DNA photolyase activity1.63E-03
44GO:0002161: aminoacyl-tRNA editing activity1.63E-03
45GO:0004148: dihydrolipoyl dehydrogenase activity1.63E-03
46GO:0005457: GDP-fucose transmembrane transporter activity1.63E-03
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.63E-03
48GO:0004565: beta-galactosidase activity1.73E-03
49GO:0004089: carbonate dehydratase activity1.73E-03
50GO:0031072: heat shock protein binding1.73E-03
51GO:0009055: electron carrier activity1.74E-03
52GO:0004375: glycine dehydrogenase (decarboxylating) activity2.37E-03
53GO:0003999: adenine phosphoribosyltransferase activity2.37E-03
54GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity2.37E-03
55GO:0005460: UDP-glucose transmembrane transporter activity2.37E-03
56GO:0004550: nucleoside diphosphate kinase activity2.37E-03
57GO:0031409: pigment binding2.44E-03
58GO:0008289: lipid binding2.92E-03
59GO:0045430: chalcone isomerase activity3.18E-03
60GO:1990137: plant seed peroxidase activity3.18E-03
61GO:0004659: prenyltransferase activity3.18E-03
62GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.59E-03
63GO:0030570: pectate lyase activity3.92E-03
64GO:0022891: substrate-specific transmembrane transporter activity3.92E-03
65GO:0008381: mechanically-gated ion channel activity4.08E-03
66GO:0005459: UDP-galactose transmembrane transporter activity4.08E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor4.08E-03
68GO:0051538: 3 iron, 4 sulfur cluster binding4.08E-03
69GO:0004356: glutamate-ammonia ligase activity4.08E-03
70GO:0051537: 2 iron, 2 sulfur cluster binding4.09E-03
71GO:0016208: AMP binding5.05E-03
72GO:0004130: cytochrome-c peroxidase activity5.05E-03
73GO:0016688: L-ascorbate peroxidase activity5.05E-03
74GO:0042578: phosphoric ester hydrolase activity5.05E-03
75GO:0080030: methyl indole-3-acetate esterase activity5.05E-03
76GO:1990714: hydroxyproline O-galactosyltransferase activity5.05E-03
77GO:0050662: coenzyme binding5.80E-03
78GO:0004791: thioredoxin-disulfide reductase activity5.80E-03
79GO:0051753: mannan synthase activity6.09E-03
80GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.09E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.09E-03
82GO:0048038: quinone binding6.67E-03
83GO:0016762: xyloglucan:xyloglucosyl transferase activity6.67E-03
84GO:0008235: metalloexopeptidase activity7.20E-03
85GO:0009881: photoreceptor activity7.20E-03
86GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.60E-03
87GO:0004601: peroxidase activity7.68E-03
88GO:0030599: pectinesterase activity7.87E-03
89GO:0016788: hydrolase activity, acting on ester bonds7.91E-03
90GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.15E-03
91GO:0004033: aldo-keto reductase (NADP) activity8.39E-03
92GO:0004564: beta-fructofuranosidase activity8.39E-03
93GO:0005200: structural constituent of cytoskeleton8.60E-03
94GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.63E-03
95GO:0008889: glycerophosphodiester phosphodiesterase activity1.09E-02
96GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism1.09E-02
97GO:0016758: transferase activity, transferring hexosyl groups1.10E-02
98GO:0016798: hydrolase activity, acting on glycosyl bonds1.14E-02
99GO:0004575: sucrose alpha-glucosidase activity1.23E-02
100GO:0046872: metal ion binding1.30E-02
101GO:0030234: enzyme regulator activity1.37E-02
102GO:0004177: aminopeptidase activity1.52E-02
103GO:0008378: galactosyltransferase activity1.68E-02
104GO:0000049: tRNA binding1.68E-02
105GO:0005262: calcium channel activity1.84E-02
106GO:0004185: serine-type carboxypeptidase activity2.08E-02
107GO:0003824: catalytic activity2.22E-02
108GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.35E-02
109GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.35E-02
110GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.35E-02
111GO:0051287: NAD binding2.52E-02
112GO:0004857: enzyme inhibitor activity2.53E-02
113GO:0051536: iron-sulfur cluster binding2.53E-02
114GO:0043424: protein histidine kinase binding2.71E-02
115GO:0008324: cation transmembrane transporter activity2.71E-02
116GO:0005507: copper ion binding2.72E-02
117GO:0003735: structural constituent of ribosome2.86E-02
118GO:0004176: ATP-dependent peptidase activity2.90E-02
119GO:0033612: receptor serine/threonine kinase binding2.90E-02
120GO:0005516: calmodulin binding2.99E-02
121GO:0045330: aspartyl esterase activity3.11E-02
122GO:0008810: cellulase activity3.29E-02
123GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.42E-02
124GO:0003756: protein disulfide isomerase activity3.49E-02
125GO:0008514: organic anion transmembrane transporter activity3.49E-02
126GO:0005102: receptor binding3.70E-02
127GO:0047134: protein-disulfide reductase activity3.70E-02
128GO:0004812: aminoacyl-tRNA ligase activity3.70E-02
129GO:0051082: unfolded protein binding3.98E-02
130GO:0005509: calcium ion binding4.26E-02
131GO:0052689: carboxylic ester hydrolase activity4.37E-02
132GO:0004872: receptor activity4.56E-02
133GO:0019901: protein kinase binding4.56E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast1.14E-39
4GO:0009535: chloroplast thylakoid membrane5.23E-28
5GO:0009941: chloroplast envelope1.61E-22
6GO:0009570: chloroplast stroma4.87E-22
7GO:0048046: apoplast2.47E-17
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.24E-13
9GO:0009534: chloroplast thylakoid1.38E-12
10GO:0009579: thylakoid1.48E-11
11GO:0009543: chloroplast thylakoid lumen2.65E-09
12GO:0046658: anchored component of plasma membrane5.16E-08
13GO:0031225: anchored component of membrane6.00E-07
14GO:0009505: plant-type cell wall1.43E-06
15GO:0010319: stromule1.10E-05
16GO:0031977: thylakoid lumen7.24E-05
17GO:0016020: membrane2.38E-04
18GO:0009654: photosystem II oxygen evolving complex3.12E-04
19GO:0010287: plastoglobule4.49E-04
20GO:0009782: photosystem I antenna complex4.64E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]4.64E-04
22GO:0009523: photosystem II8.13E-04
23GO:0042170: plastid membrane1.00E-03
24GO:0000427: plastid-encoded plastid RNA polymerase complex1.00E-03
25GO:0005853: eukaryotic translation elongation factor 1 complex1.63E-03
26GO:0030095: chloroplast photosystem II1.95E-03
27GO:0005618: cell wall2.17E-03
28GO:0030076: light-harvesting complex2.19E-03
29GO:0005960: glycine cleavage complex2.37E-03
30GO:0005775: vacuolar lumen2.37E-03
31GO:0005840: ribosome2.62E-03
32GO:0031969: chloroplast membrane2.77E-03
33GO:0042651: thylakoid membrane2.99E-03
34GO:0000139: Golgi membrane4.81E-03
35GO:0019898: extrinsic component of membrane6.23E-03
36GO:0009533: chloroplast stromal thylakoid7.20E-03
37GO:0009706: chloroplast inner membrane8.50E-03
38GO:0005778: peroxisomal membrane8.60E-03
39GO:0009539: photosystem II reaction center9.63E-03
40GO:0005811: lipid particle9.63E-03
41GO:0009536: plastid1.04E-02
42GO:0045298: tubulin complex1.09E-02
43GO:0005763: mitochondrial small ribosomal subunit1.09E-02
44GO:0005886: plasma membrane1.18E-02
45GO:0055028: cortical microtubule1.37E-02
46GO:0016324: apical plasma membrane1.37E-02
47GO:0022626: cytosolic ribosome1.38E-02
48GO:0015934: large ribosomal subunit1.47E-02
49GO:0016021: integral component of membrane1.60E-02
50GO:0009508: plastid chromosome1.84E-02
51GO:0005875: microtubule associated complex2.35E-02
52GO:0005758: mitochondrial intermembrane space2.53E-02
53GO:0005576: extracellular region2.60E-02
54GO:0009532: plastid stroma2.90E-02
55GO:0005874: microtubule3.70E-02
56GO:0009522: photosystem I4.34E-02
Gene type



Gene DE type