co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G31360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090279: regulation of calcium ion import	0.00E+00
2	GO:0071474: cellular hyperosmotic response	0.00E+00
3	GO:0070584: mitochondrion morphogenesis	0.00E+00
4	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
5	GO:0070979: protein K11-linked ubiquitination	0.00E+00
6	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
7	GO:0046677: response to antibiotic	0.00E+00
8	GO:0015995: chlorophyll biosynthetic process	3.92E-07
9	GO:0015979: photosynthesis	5.15E-06
10	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	4.74E-05
11	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.17E-04
12	GO:0071712: ER-associated misfolded protein catabolic process	1.17E-04
13	GO:0051262: protein tetramerization	1.17E-04
14	GO:0032527: protein exit from endoplasmic reticulum	1.17E-04
15	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.00E-04
16	GO:0032940: secretion by cell	2.00E-04
17	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.94E-04
18	GO:0042938: dipeptide transport	3.94E-04
19	GO:0009765: photosynthesis, light harvesting	3.94E-04
20	GO:0016123: xanthophyll biosynthetic process	5.00E-04
21	GO:0032876: negative regulation of DNA endoreduplication	5.00E-04
22	GO:0006655: phosphatidylglycerol biosynthetic process	6.13E-04
23	GO:0010405: arabinogalactan protein metabolic process	6.13E-04
24	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.13E-04
25	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.13E-04
26	GO:0009723: response to ethylene	6.37E-04
27	GO:0010189: vitamin E biosynthetic process	7.31E-04
28	GO:0071470: cellular response to osmotic stress	7.31E-04
29	GO:0009645: response to low light intensity stimulus	8.54E-04
30	GO:0080186: developmental vegetative growth	8.54E-04
31	GO:0009769: photosynthesis, light harvesting in photosystem II	8.54E-04
32	GO:0010114: response to red light	8.94E-04
33	GO:0032875: regulation of DNA endoreduplication	9.81E-04
34	GO:0070413: trehalose metabolism in response to stress	9.81E-04
35	GO:0010099: regulation of photomorphogenesis	1.11E-03
36	GO:0007186: G-protein coupled receptor signaling pathway	1.11E-03
37	GO:0048507: meristem development	1.25E-03
38	GO:1900865: chloroplast RNA modification	1.40E-03
39	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.40E-03
40	GO:0009688: abscisic acid biosynthetic process	1.55E-03
41	GO:0009641: shade avoidance	1.55E-03
42	GO:0030148: sphingolipid biosynthetic process	1.70E-03
43	GO:0009698: phenylpropanoid metabolic process	1.70E-03
44	GO:0015706: nitrate transport	1.86E-03
45	GO:0016024: CDP-diacylglycerol biosynthetic process	1.86E-03
46	GO:0018107: peptidyl-threonine phosphorylation	2.03E-03
47	GO:0009718: anthocyanin-containing compound biosynthetic process	2.03E-03
48	GO:0080147: root hair cell development	2.74E-03
49	GO:0005992: trehalose biosynthetic process	2.74E-03
50	GO:0009768: photosynthesis, light harvesting in photosystem I	2.93E-03
51	GO:0006874: cellular calcium ion homeostasis	2.93E-03
52	GO:0009269: response to desiccation	3.12E-03
53	GO:0055114: oxidation-reduction process	3.40E-03
54	GO:0009686: gibberellin biosynthetic process	3.52E-03
55	GO:0070417: cellular response to cold	3.93E-03
56	GO:0010087: phloem or xylem histogenesis	4.15E-03
57	GO:0010182: sugar mediated signaling pathway	4.37E-03
58	GO:0010305: leaf vascular tissue pattern formation	4.37E-03
59	GO:0009658: chloroplast organization	4.38E-03
60	GO:0006970: response to osmotic stress	4.71E-03
61	GO:0008654: phospholipid biosynthetic process	4.81E-03
62	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.61E-03
63	GO:0016126: sterol biosynthetic process	6.50E-03
64	GO:0018298: protein-chromophore linkage	7.81E-03
65	GO:0010218: response to far red light	8.37E-03
66	GO:0006811: ion transport	8.37E-03
67	GO:0009910: negative regulation of flower development	8.65E-03
68	GO:0006865: amino acid transport	8.93E-03
69	GO:0009637: response to blue light	9.22E-03
70	GO:0034599: cellular response to oxidative stress	9.51E-03
71	GO:0008283: cell proliferation	1.10E-02
72	GO:0051707: response to other organism	1.10E-02
73	GO:0009640: photomorphogenesis	1.10E-02
74	GO:0009644: response to high light intensity	1.16E-02
75	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.26E-02
76	GO:0009416: response to light stimulus	1.42E-02
77	GO:0006857: oligopeptide transport	1.43E-02
78	GO:0051301: cell division	1.55E-02
79	GO:0009740: gibberellic acid mediated signaling pathway	1.67E-02
80	GO:0016310: phosphorylation	1.75E-02
81	GO:0018105: peptidyl-serine phosphorylation	1.78E-02
82	GO:0009845: seed germination	2.16E-02
83	GO:0009790: embryo development	2.29E-02
84	GO:0006508: proteolysis	2.32E-02
85	GO:0006413: translational initiation	2.45E-02
86	GO:0007623: circadian rhythm	2.57E-02
87	GO:0010150: leaf senescence	2.57E-02
88	GO:0007166: cell surface receptor signaling pathway	2.83E-02
89	GO:0008380: RNA splicing	2.92E-02
90	GO:0007049: cell cycle	3.80E-02
91	GO:0080167: response to karrikin	4.09E-02
92	GO:0046777: protein autophosphorylation	4.30E-02
93	GO:0044550: secondary metabolite biosynthetic process	4.35E-02
94	GO:0005975: carbohydrate metabolic process	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
5	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
6	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
7	GO:0052631: sphingolipid delta-8 desaturase activity	4.74E-05
8	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	4.74E-05
9	GO:0005227: calcium activated cation channel activity	4.74E-05
10	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	4.74E-05
11	GO:0016630: protochlorophyllide reductase activity	1.17E-04
12	GO:0008728: GTP diphosphokinase activity	1.17E-04
13	GO:0004103: choline kinase activity	1.17E-04
14	GO:0044390: ubiquitin-like protein conjugating enzyme binding	1.17E-04
15	GO:0016868: intramolecular transferase activity, phosphotransferases	1.17E-04
16	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.17E-04
17	GO:0016805: dipeptidase activity	2.00E-04
18	GO:0004180: carboxypeptidase activity	2.00E-04
19	GO:0000254: C-4 methylsterol oxidase activity	2.94E-04
20	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.94E-04
21	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	3.94E-04
22	GO:0042936: dipeptide transporter activity	3.94E-04
23	GO:0004930: G-protein coupled receptor activity	3.94E-04
24	GO:0051538: 3 iron, 4 sulfur cluster binding	5.00E-04
25	GO:0004462: lactoylglutathione lyase activity	6.13E-04
26	GO:0004605: phosphatidate cytidylyltransferase activity	6.13E-04
27	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.13E-04
28	GO:0004602: glutathione peroxidase activity	7.31E-04
29	GO:0005261: cation channel activity	7.31E-04
30	GO:0000989: transcription factor activity, transcription factor binding	1.25E-03
31	GO:0071949: FAD binding	1.25E-03
32	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.55E-03
33	GO:0004022: alcohol dehydrogenase (NAD) activity	2.03E-03
34	GO:0004970: ionotropic glutamate receptor activity	2.38E-03
35	GO:0005217: intracellular ligand-gated ion channel activity	2.38E-03
36	GO:0031409: pigment binding	2.56E-03
37	GO:0005216: ion channel activity	2.93E-03
38	GO:0008536: Ran GTPase binding	4.37E-03
39	GO:0019901: protein kinase binding	4.81E-03
40	GO:0016791: phosphatase activity	5.75E-03
41	GO:0016168: chlorophyll binding	6.75E-03
42	GO:0004519: endonuclease activity	8.69E-03
43	GO:0004672: protein kinase activity	9.12E-03
44	GO:0004185: serine-type carboxypeptidase activity	1.10E-02
45	GO:0004674: protein serine/threonine kinase activity	1.15E-02
46	GO:0015171: amino acid transmembrane transporter activity	1.46E-02
47	GO:0016787: hydrolase activity	1.47E-02
48	GO:0016758: transferase activity, transferring hexosyl groups	2.01E-02
49	GO:0016829: lyase activity	2.16E-02
50	GO:0004252: serine-type endopeptidase activity	2.20E-02
51	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.45E-02
52	GO:0016301: kinase activity	2.50E-02
53	GO:0003743: translation initiation factor activity	2.88E-02
54	GO:0005215: transporter activity	3.19E-02
55	GO:0005524: ATP binding	3.40E-02
56	GO:0008168: methyltransferase activity	3.42E-02
57	GO:0000287: magnesium ion binding	3.47E-02
58	GO:0046872: metal ion binding	3.65E-02
59	GO:0003682: chromatin binding	3.66E-02
60	GO:0016491: oxidoreductase activity	3.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009941: chloroplast envelope	2.28E-05
2	GO:0009570: chloroplast stroma	6.56E-05
3	GO:0009535: chloroplast thylakoid membrane	1.41E-04
4	GO:0009507: chloroplast	2.91E-04
5	GO:0036513: Derlin-1 retrotranslocation complex	2.94E-04
6	GO:0009517: PSII associated light-harvesting complex II	3.94E-04
7	GO:0005680: anaphase-promoting complex	1.25E-03
8	GO:0016604: nuclear body	1.40E-03
9	GO:0005789: endoplasmic reticulum membrane	1.96E-03
10	GO:0030076: light-harvesting complex	2.38E-03
11	GO:0009534: chloroplast thylakoid	2.91E-03
12	GO:0016021: integral component of membrane	2.98E-03
13	GO:0009522: photosystem I	4.59E-03
14	GO:0009523: photosystem II	4.81E-03
15	GO:0031969: chloroplast membrane	5.42E-03
16	GO:0005783: endoplasmic reticulum	5.52E-03
17	GO:0009707: chloroplast outer membrane	7.81E-03
18	GO:0016607: nuclear speck	1.57E-02
19	GO:0009706: chloroplast inner membrane	1.75E-02
20	GO:0010287: plastoglobule	1.97E-02
21	GO:0005886: plasma membrane	3.48E-02