Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G31170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:0006573: valine metabolic process0.00E+00
3GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
4GO:0070125: mitochondrial translational elongation0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0009658: chloroplast organization6.50E-10
9GO:0042026: protein refolding9.33E-09
10GO:0032544: plastid translation5.64E-08
11GO:0006458: 'de novo' protein folding1.59E-06
12GO:0006418: tRNA aminoacylation for protein translation2.07E-06
13GO:0061077: chaperone-mediated protein folding2.57E-06
14GO:0006457: protein folding5.82E-06
15GO:0043572: plastid fission2.00E-05
16GO:0010020: chloroplast fission3.55E-05
17GO:0006412: translation4.15E-05
18GO:0007005: mitochondrion organization9.34E-05
19GO:0006810: transport1.13E-04
20GO:0016117: carotenoid biosynthetic process1.36E-04
21GO:0042742: defense response to bacterium1.62E-04
22GO:0006438: valyl-tRNA aminoacylation2.27E-04
23GO:0010442: guard cell morphogenesis2.27E-04
24GO:0006551: leucine metabolic process2.27E-04
25GO:0006430: lysyl-tRNA aminoacylation2.27E-04
26GO:0006415: translational termination4.83E-04
27GO:0009773: photosynthetic electron transport in photosystem I4.83E-04
28GO:0009662: etioplast organization5.05E-04
29GO:2000123: positive regulation of stomatal complex development5.05E-04
30GO:0010424: DNA methylation on cytosine within a CG sequence5.05E-04
31GO:0043039: tRNA aminoacylation5.05E-04
32GO:0052541: plant-type cell wall cellulose metabolic process5.05E-04
33GO:0006695: cholesterol biosynthetic process5.05E-04
34GO:0010086: embryonic root morphogenesis5.05E-04
35GO:0010069: zygote asymmetric cytokinesis in embryo sac5.05E-04
36GO:0045454: cell redox homeostasis5.91E-04
37GO:0009790: embryo development6.15E-04
38GO:0009767: photosynthetic electron transport chain6.27E-04
39GO:0010207: photosystem II assembly7.06E-04
40GO:0006696: ergosterol biosynthetic process8.21E-04
41GO:0007017: microtubule-based process1.06E-03
42GO:0071329: cellular response to sucrose stimulus1.17E-03
43GO:0006165: nucleoside diphosphate phosphorylation1.17E-03
44GO:0006228: UTP biosynthetic process1.17E-03
45GO:0006424: glutamyl-tRNA aminoacylation1.17E-03
46GO:0016556: mRNA modification1.17E-03
47GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.17E-03
48GO:0007231: osmosensory signaling pathway1.17E-03
49GO:0051085: chaperone mediated protein folding requiring cofactor1.17E-03
50GO:0010239: chloroplast mRNA processing1.17E-03
51GO:0006241: CTP biosynthetic process1.17E-03
52GO:0006730: one-carbon metabolic process1.27E-03
53GO:0033500: carbohydrate homeostasis1.56E-03
54GO:2000038: regulation of stomatal complex development1.56E-03
55GO:0006546: glycine catabolic process1.56E-03
56GO:0009902: chloroplast relocation1.56E-03
57GO:0006808: regulation of nitrogen utilization1.56E-03
58GO:0006479: protein methylation1.56E-03
59GO:0009765: photosynthesis, light harvesting1.56E-03
60GO:0006183: GTP biosynthetic process1.56E-03
61GO:0042254: ribosome biogenesis1.57E-03
62GO:0000413: protein peptidyl-prolyl isomerization1.76E-03
63GO:0048359: mucilage metabolic process involved in seed coat development1.99E-03
64GO:0016120: carotene biosynthetic process1.99E-03
65GO:0032543: mitochondrial translation1.99E-03
66GO:0010236: plastoquinone biosynthetic process1.99E-03
67GO:0016123: xanthophyll biosynthetic process1.99E-03
68GO:0009735: response to cytokinin1.99E-03
69GO:0010375: stomatal complex patterning1.99E-03
70GO:0006796: phosphate-containing compound metabolic process2.45E-03
71GO:0042793: transcription from plastid promoter2.45E-03
72GO:0048831: regulation of shoot system development2.45E-03
73GO:0010190: cytochrome b6f complex assembly2.45E-03
74GO:0042549: photosystem II stabilization2.45E-03
75GO:0006555: methionine metabolic process2.45E-03
76GO:0009082: branched-chain amino acid biosynthetic process2.94E-03
77GO:1901259: chloroplast rRNA processing2.94E-03
78GO:0048509: regulation of meristem development2.94E-03
79GO:0009099: valine biosynthetic process2.94E-03
80GO:0009854: oxidative photosynthetic carbon pathway2.94E-03
81GO:0010555: response to mannitol2.94E-03
82GO:0009955: adaxial/abaxial pattern specification2.94E-03
83GO:0010027: thylakoid membrane organization3.36E-03
84GO:0008272: sulfate transport3.47E-03
85GO:0000105: histidine biosynthetic process4.02E-03
86GO:0008610: lipid biosynthetic process4.02E-03
87GO:0009642: response to light intensity4.02E-03
88GO:0009793: embryo development ending in seed dormancy4.08E-03
89GO:0048481: plant ovule development4.38E-03
90GO:0009817: defense response to fungus, incompatible interaction4.38E-03
91GO:0009657: plastid organization4.60E-03
92GO:0009097: isoleucine biosynthetic process4.60E-03
93GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.60E-03
94GO:0010206: photosystem II repair5.22E-03
95GO:0033384: geranyl diphosphate biosynthetic process5.22E-03
96GO:0006783: heme biosynthetic process5.22E-03
97GO:0048589: developmental growth5.22E-03
98GO:0015780: nucleotide-sugar transport5.22E-03
99GO:0045337: farnesyl diphosphate biosynthetic process5.22E-03
100GO:0009853: photorespiration5.54E-03
101GO:0046686: response to cadmium ion5.55E-03
102GO:0006349: regulation of gene expression by genetic imprinting5.85E-03
103GO:0006779: porphyrin-containing compound biosynthetic process5.85E-03
104GO:0035999: tetrahydrofolate interconversion5.85E-03
105GO:0006782: protoporphyrinogen IX biosynthetic process6.51E-03
106GO:0045036: protein targeting to chloroplast6.51E-03
107GO:0019684: photosynthesis, light reaction7.20E-03
108GO:0043085: positive regulation of catalytic activity7.20E-03
109GO:0018119: peptidyl-cysteine S-nitrosylation7.20E-03
110GO:0010216: maintenance of DNA methylation7.20E-03
111GO:0045037: protein import into chloroplast stroma7.92E-03
112GO:0090351: seedling development1.02E-02
113GO:0006071: glycerol metabolic process1.10E-02
114GO:0007010: cytoskeleton organization1.19E-02
115GO:0019344: cysteine biosynthetic process1.19E-02
116GO:0009116: nucleoside metabolic process1.19E-02
117GO:0015979: photosynthesis1.20E-02
118GO:0010026: trichome differentiation1.27E-02
119GO:0009409: response to cold1.35E-02
120GO:0080092: regulation of pollen tube growth1.45E-02
121GO:0009294: DNA mediated transformation1.54E-02
122GO:0009411: response to UV1.54E-02
123GO:0008360: regulation of cell shape1.93E-02
124GO:0006662: glycerol ether metabolic process1.93E-02
125GO:0007018: microtubule-based movement2.03E-02
126GO:0006814: sodium ion transport2.03E-02
127GO:0006633: fatty acid biosynthetic process2.17E-02
128GO:0006413: translational initiation2.22E-02
129GO:0016032: viral process2.35E-02
130GO:0007267: cell-cell signaling2.68E-02
131GO:0010029: regulation of seed germination3.03E-02
132GO:0009627: systemic acquired resistance3.15E-02
133GO:0015995: chlorophyll biosynthetic process3.27E-02
134GO:0016311: dephosphorylation3.40E-02
135GO:0018298: protein-chromophore linkage3.52E-02
136GO:0008219: cell death3.52E-02
137GO:0048767: root hair elongation3.65E-02
138GO:0000160: phosphorelay signal transduction system3.65E-02
139GO:0009910: negative regulation of flower development3.90E-02
140GO:0009637: response to blue light4.17E-02
141GO:0034599: cellular response to oxidative stress4.30E-02
142GO:0006839: mitochondrial transport4.57E-02
143GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.71E-02
144GO:0006631: fatty acid metabolic process4.71E-02
145GO:0042542: response to hydrogen peroxide4.85E-02
146GO:0051707: response to other organism4.98E-02
RankGO TermAdjusted P value
1GO:0045435: lycopene epsilon cyclase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
7GO:0009885: transmembrane histidine kinase cytokinin receptor activity0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0019955: cytokine binding0.00E+00
11GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
12GO:0051920: peroxiredoxin activity9.33E-09
13GO:0016209: antioxidant activity3.33E-08
14GO:0051082: unfolded protein binding1.10E-07
15GO:0019843: rRNA binding2.47E-07
16GO:0044183: protein binding involved in protein folding2.96E-07
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.03E-07
18GO:0003735: structural constituent of ribosome2.15E-06
19GO:0004812: aminoacyl-tRNA ligase activity5.57E-06
20GO:0016149: translation release factor activity, codon specific2.00E-05
21GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.19E-04
22GO:0004655: porphobilinogen synthase activity2.27E-04
23GO:0051996: squalene synthase activity2.27E-04
24GO:0003984: acetolactate synthase activity2.27E-04
25GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.27E-04
26GO:0004832: valine-tRNA ligase activity2.27E-04
27GO:0004824: lysine-tRNA ligase activity2.27E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.27E-04
29GO:0004831: tyrosine-tRNA ligase activity2.27E-04
30GO:0003747: translation release factor activity3.00E-04
31GO:0009884: cytokinin receptor activity5.05E-04
32GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.05E-04
33GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.05E-04
34GO:0004047: aminomethyltransferase activity5.05E-04
35GO:0031072: heat shock protein binding6.27E-04
36GO:0002161: aminoacyl-tRNA editing activity8.21E-04
37GO:0004148: dihydrolipoyl dehydrogenase activity8.21E-04
38GO:0030267: glyoxylate reductase (NADP) activity8.21E-04
39GO:0005034: osmosensor activity8.21E-04
40GO:0017150: tRNA dihydrouridine synthase activity8.21E-04
41GO:0003913: DNA photolyase activity8.21E-04
42GO:0005528: FK506 binding9.67E-04
43GO:0005198: structural molecule activity1.13E-03
44GO:0004550: nucleoside diphosphate kinase activity1.17E-03
45GO:0043023: ribosomal large subunit binding1.17E-03
46GO:0008097: 5S rRNA binding1.17E-03
47GO:0008508: bile acid:sodium symporter activity1.17E-03
48GO:0008276: protein methyltransferase activity1.17E-03
49GO:0004601: peroxidase activity1.53E-03
50GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.56E-03
51GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.56E-03
52GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.56E-03
53GO:0004045: aminoacyl-tRNA hydrolase activity1.56E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor1.99E-03
55GO:0008374: O-acyltransferase activity1.99E-03
56GO:0019901: protein kinase binding2.18E-03
57GO:0016462: pyrophosphatase activity2.45E-03
58GO:0080030: methyl indole-3-acetate esterase activity2.45E-03
59GO:0102391: decanoate--CoA ligase activity2.94E-03
60GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.94E-03
61GO:0003886: DNA (cytosine-5-)-methyltransferase activity2.94E-03
62GO:0008237: metallopeptidase activity2.99E-03
63GO:0005200: structural constituent of cytoskeleton2.99E-03
64GO:0019899: enzyme binding3.47E-03
65GO:0004467: long-chain fatty acid-CoA ligase activity3.47E-03
66GO:0016831: carboxy-lyase activity3.47E-03
67GO:0004427: inorganic diphosphatase activity3.47E-03
68GO:0009881: photoreceptor activity3.47E-03
69GO:0003924: GTPase activity3.83E-03
70GO:0004033: aldo-keto reductase (NADP) activity4.02E-03
71GO:0008236: serine-type peptidase activity4.16E-03
72GO:0003843: 1,3-beta-D-glucan synthase activity4.60E-03
73GO:0004222: metalloendopeptidase activity4.82E-03
74GO:0004337: geranyltranstransferase activity5.22E-03
75GO:0008889: glycerophosphodiester phosphodiesterase activity5.22E-03
76GO:0003746: translation elongation factor activity5.54E-03
77GO:0004673: protein histidine kinase activity6.51E-03
78GO:0008047: enzyme activator activity6.51E-03
79GO:0005089: Rho guanyl-nucleotide exchange factor activity7.20E-03
80GO:0004161: dimethylallyltranstransferase activity7.20E-03
81GO:0005524: ATP binding7.46E-03
82GO:0000049: tRNA binding7.92E-03
83GO:0000155: phosphorelay sensor kinase activity8.66E-03
84GO:0004565: beta-galactosidase activity8.66E-03
85GO:0043424: protein histidine kinase binding1.27E-02
86GO:0004176: ATP-dependent peptidase activity1.36E-02
87GO:0008514: organic anion transmembrane transporter activity1.64E-02
88GO:0047134: protein-disulfide reductase activity1.73E-02
89GO:0005525: GTP binding1.94E-02
90GO:0004791: thioredoxin-disulfide reductase activity2.03E-02
91GO:0048038: quinone binding2.24E-02
92GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.46E-02
93GO:0008483: transaminase activity2.68E-02
94GO:0016722: oxidoreductase activity, oxidizing metal ions2.68E-02
95GO:0003743: translation initiation factor activity2.79E-02
96GO:0016597: amino acid binding2.80E-02
97GO:0016887: ATPase activity2.88E-02
98GO:0003824: catalytic activity3.02E-02
99GO:0042802: identical protein binding3.03E-02
100GO:0004721: phosphoprotein phosphatase activity3.27E-02
101GO:0000287: magnesium ion binding3.62E-02
102GO:0003993: acid phosphatase activity4.30E-02
103GO:0016740: transferase activity4.36E-02
104GO:0003729: mRNA binding4.69E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast3.79E-51
5GO:0009570: chloroplast stroma5.80E-44
6GO:0009941: chloroplast envelope2.95E-27
7GO:0009579: thylakoid1.45E-16
8GO:0009543: chloroplast thylakoid lumen1.13E-14
9GO:0009535: chloroplast thylakoid membrane9.03E-13
10GO:0031977: thylakoid lumen7.41E-09
11GO:0009534: chloroplast thylakoid4.60E-07
12GO:0009654: photosystem II oxygen evolving complex2.07E-06
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.05E-06
14GO:0000311: plastid large ribosomal subunit2.34E-05
15GO:0030095: chloroplast photosystem II3.55E-05
16GO:0022626: cytosolic ribosome1.06E-04
17GO:0005840: ribosome1.85E-04
18GO:0019898: extrinsic component of membrane2.07E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.27E-04
20GO:0010319: stromule3.21E-04
21GO:0048046: apoplast4.80E-04
22GO:0005875: microtubule associated complex8.76E-04
23GO:0009536: plastid1.02E-03
24GO:0009532: plastid stroma1.17E-03
25GO:0005874: microtubule2.01E-03
26GO:0031969: chloroplast membrane2.12E-03
27GO:0009706: chloroplast inner membrane2.21E-03
28GO:0009533: chloroplast stromal thylakoid3.47E-03
29GO:0000148: 1,3-beta-D-glucan synthase complex4.60E-03
30GO:0009539: photosystem II reaction center4.60E-03
31GO:0042644: chloroplast nucleoid5.22E-03
32GO:0045298: tubulin complex5.22E-03
33GO:0005763: mitochondrial small ribosomal subunit5.22E-03
34GO:0046658: anchored component of plasma membrane6.32E-03
35GO:0016324: apical plasma membrane6.51E-03
36GO:0000312: plastid small ribosomal subunit9.42E-03
37GO:0042651: thylakoid membrane1.27E-02
38GO:0010287: plastoglobule1.63E-02
39GO:0005871: kinesin complex1.73E-02
40GO:0005623: cell1.77E-02
41GO:0031225: anchored component of membrane1.79E-02
42GO:0005759: mitochondrial matrix2.17E-02
43GO:0009295: nucleoid2.68E-02
44GO:0005739: mitochondrion3.23E-02
45GO:0009505: plant-type cell wall3.67E-02
46GO:0015934: large ribosomal subunit3.90E-02
47GO:0022625: cytosolic large ribosomal subunit4.79E-02
Gene type



Gene DE type