Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G30870

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
2GO:0006182: cGMP biosynthetic process0.00E+00
3GO:0072722: response to amitrole0.00E+00
4GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
5GO:0015690: aluminum cation transport0.00E+00
6GO:0039694: viral RNA genome replication0.00E+00
7GO:0006884: cell volume homeostasis0.00E+00
8GO:0009617: response to bacterium1.39E-11
9GO:0000162: tryptophan biosynthetic process1.71E-06
10GO:0010120: camalexin biosynthetic process7.15E-06
11GO:0043069: negative regulation of programmed cell death1.77E-05
12GO:0009682: induced systemic resistance2.28E-05
13GO:0046686: response to cadmium ion4.57E-05
14GO:0016998: cell wall macromolecule catabolic process9.83E-05
15GO:0071456: cellular response to hypoxia1.13E-04
16GO:0010150: leaf senescence1.56E-04
17GO:0032259: methylation2.05E-04
18GO:0009851: auxin biosynthetic process2.47E-04
19GO:0080120: CAAX-box protein maturation2.48E-04
20GO:0071586: CAAX-box protein processing2.48E-04
21GO:0006805: xenobiotic metabolic process2.48E-04
22GO:0051245: negative regulation of cellular defense response2.48E-04
23GO:0009700: indole phytoalexin biosynthetic process2.48E-04
24GO:0055081: anion homeostasis2.48E-04
25GO:0010112: regulation of systemic acquired resistance3.41E-04
26GO:0055114: oxidation-reduction process3.84E-04
27GO:0050832: defense response to fungus3.90E-04
28GO:0006032: chitin catabolic process4.74E-04
29GO:0052544: defense response by callose deposition in cell wall5.47E-04
30GO:0000272: polysaccharide catabolic process5.47E-04
31GO:0015914: phospholipid transport5.49E-04
32GO:0010155: regulation of proton transport5.49E-04
33GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.49E-04
34GO:0019441: tryptophan catabolic process to kynurenine5.49E-04
35GO:0042742: defense response to bacterium8.70E-04
36GO:0006099: tricarboxylic acid cycle8.83E-04
37GO:0042256: mature ribosome assembly8.92E-04
38GO:0010272: response to silver ion8.92E-04
39GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway8.92E-04
40GO:0045039: protein import into mitochondrial inner membrane8.92E-04
41GO:0042343: indole glucosinolate metabolic process8.92E-04
42GO:1902626: assembly of large subunit precursor of preribosome8.92E-04
43GO:0002230: positive regulation of defense response to virus by host8.92E-04
44GO:0080055: low-affinity nitrate transport8.92E-04
45GO:0010116: positive regulation of abscisic acid biosynthetic process1.27E-03
46GO:0019438: aromatic compound biosynthetic process1.27E-03
47GO:0006612: protein targeting to membrane1.27E-03
48GO:1902290: positive regulation of defense response to oomycetes1.27E-03
49GO:0001676: long-chain fatty acid metabolic process1.27E-03
50GO:0009636: response to toxic substance1.32E-03
51GO:0009625: response to insect1.57E-03
52GO:1901141: regulation of lignin biosynthetic process1.70E-03
53GO:1900864: mitochondrial RNA modification1.70E-03
54GO:0010363: regulation of plant-type hypersensitive response1.70E-03
55GO:0042273: ribosomal large subunit biogenesis1.70E-03
56GO:0010600: regulation of auxin biosynthetic process1.70E-03
57GO:0000460: maturation of 5.8S rRNA1.70E-03
58GO:0010107: potassium ion import1.70E-03
59GO:0051205: protein insertion into membrane1.70E-03
60GO:0080142: regulation of salicylic acid biosynthetic process1.70E-03
61GO:0006461: protein complex assembly2.17E-03
62GO:0009697: salicylic acid biosynthetic process2.17E-03
63GO:0018279: protein N-linked glycosylation via asparagine2.17E-03
64GO:0006564: L-serine biosynthetic process2.17E-03
65GO:0009646: response to absence of light2.31E-03
66GO:0006561: proline biosynthetic process2.67E-03
67GO:0006751: glutathione catabolic process2.67E-03
68GO:0000470: maturation of LSU-rRNA2.67E-03
69GO:0009117: nucleotide metabolic process2.67E-03
70GO:0009759: indole glucosinolate biosynthetic process2.67E-03
71GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.21E-03
72GO:0000054: ribosomal subunit export from nucleus3.21E-03
73GO:1900056: negative regulation of leaf senescence3.79E-03
74GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway3.79E-03
75GO:0006821: chloride transport3.79E-03
76GO:1900057: positive regulation of leaf senescence3.79E-03
77GO:1902074: response to salt3.79E-03
78GO:0009816: defense response to bacterium, incompatible interaction4.03E-03
79GO:0006102: isocitrate metabolic process4.39E-03
80GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.39E-03
81GO:0009819: drought recovery4.39E-03
82GO:0043562: cellular response to nitrogen levels5.03E-03
83GO:0009808: lignin metabolic process5.03E-03
84GO:0009699: phenylpropanoid biosynthetic process5.03E-03
85GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.03E-03
86GO:0009407: toxin catabolic process5.48E-03
87GO:0034765: regulation of ion transmembrane transport5.70E-03
88GO:0090333: regulation of stomatal closure5.70E-03
89GO:0010043: response to zinc ion5.75E-03
90GO:0007166: cell surface receptor signaling pathway6.18E-03
91GO:1900426: positive regulation of defense response to bacterium6.40E-03
92GO:0043067: regulation of programmed cell death6.40E-03
93GO:0000387: spliceosomal snRNP assembly6.40E-03
94GO:1900865: chloroplast RNA modification6.40E-03
95GO:0009870: defense response signaling pathway, resistance gene-dependent7.12E-03
96GO:0009688: abscisic acid biosynthetic process7.12E-03
97GO:0006631: fatty acid metabolic process7.49E-03
98GO:0030148: sphingolipid biosynthetic process7.88E-03
99GO:0048229: gametophyte development7.88E-03
100GO:0002213: defense response to insect8.66E-03
101GO:0015706: nitrate transport8.66E-03
102GO:0010582: floral meristem determinacy8.66E-03
103GO:0009718: anthocyanin-containing compound biosynthetic process9.47E-03
104GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process9.47E-03
105GO:0006626: protein targeting to mitochondrion9.47E-03
106GO:0009414: response to water deprivation9.62E-03
107GO:0009735: response to cytokinin9.73E-03
108GO:0006979: response to oxidative stress1.02E-02
109GO:0010143: cutin biosynthetic process1.03E-02
110GO:0006541: glutamine metabolic process1.03E-02
111GO:0002237: response to molecule of bacterial origin1.03E-02
112GO:0010053: root epidermal cell differentiation1.12E-02
113GO:0070588: calcium ion transmembrane transport1.12E-02
114GO:0009651: response to salt stress1.20E-02
115GO:0034976: response to endoplasmic reticulum stress1.21E-02
116GO:0010025: wax biosynthetic process1.21E-02
117GO:0010200: response to chitin1.25E-02
118GO:2000377: regulation of reactive oxygen species metabolic process1.30E-02
119GO:0005992: trehalose biosynthetic process1.30E-02
120GO:0009863: salicylic acid mediated signaling pathway1.30E-02
121GO:0080147: root hair cell development1.30E-02
122GO:0009626: plant-type hypersensitive response1.39E-02
123GO:0009620: response to fungus1.43E-02
124GO:0006952: defense response1.43E-02
125GO:0006334: nucleosome assembly1.49E-02
126GO:0048278: vesicle docking1.49E-02
127GO:0045454: cell redox homeostasis1.50E-02
128GO:0009814: defense response, incompatible interaction1.59E-02
129GO:0016226: iron-sulfur cluster assembly1.59E-02
130GO:0010227: floral organ abscission1.69E-02
131GO:0006012: galactose metabolic process1.69E-02
132GO:0071215: cellular response to abscisic acid stimulus1.69E-02
133GO:0010584: pollen exine formation1.79E-02
134GO:0070417: cellular response to cold1.90E-02
135GO:0042631: cellular response to water deprivation2.01E-02
136GO:0042391: regulation of membrane potential2.01E-02
137GO:0010501: RNA secondary structure unwinding2.01E-02
138GO:0008360: regulation of cell shape2.12E-02
139GO:0010197: polar nucleus fusion2.12E-02
140GO:0061025: membrane fusion2.23E-02
141GO:0009790: embryo development2.29E-02
142GO:0000302: response to reactive oxygen species2.46E-02
143GO:0010193: response to ozone2.46E-02
144GO:0009630: gravitropism2.58E-02
145GO:0010583: response to cyclopentenone2.58E-02
146GO:0019760: glucosinolate metabolic process2.82E-02
147GO:0006468: protein phosphorylation2.99E-02
148GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.03E-02
149GO:0009615: response to virus3.19E-02
150GO:0009627: systemic acquired resistance3.46E-02
151GO:0042128: nitrate assimilation3.46E-02
152GO:0006906: vesicle fusion3.46E-02
153GO:0009737: response to abscisic acid3.62E-02
154GO:0009817: defense response to fungus, incompatible interaction3.86E-02
155GO:0048767: root hair elongation4.00E-02
156GO:0010311: lateral root formation4.00E-02
157GO:0009611: response to wounding4.11E-02
158GO:0042254: ribosome biogenesis4.26E-02
159GO:0007568: aging4.28E-02
160GO:0010119: regulation of stomatal movement4.28E-02
161GO:0009867: jasmonic acid mediated signaling pathway4.56E-02
162GO:0045087: innate immune response4.56E-02
163GO:0009723: response to ethylene4.83E-02
RankGO TermAdjusted P value
1GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
2GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0050220: prostaglandin-E synthase activity0.00E+00
5GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
6GO:0004049: anthranilate synthase activity1.03E-05
7GO:0016614: oxidoreductase activity, acting on CH-OH group of donors7.52E-05
8GO:0050660: flavin adenine dinucleotide binding7.68E-05
9GO:0102391: decanoate--CoA ligase activity1.37E-04
10GO:0004467: long-chain fatty acid-CoA ligase activity1.80E-04
11GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.48E-04
12GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity2.48E-04
13GO:2001227: quercitrin binding2.48E-04
14GO:0004425: indole-3-glycerol-phosphate synthase activity2.48E-04
15GO:0033984: indole-3-glycerol-phosphate lyase activity2.48E-04
16GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.48E-04
17GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.48E-04
18GO:0031957: very long-chain fatty acid-CoA ligase activity2.48E-04
19GO:2001147: camalexin binding2.48E-04
20GO:0009055: electron carrier activity2.63E-04
21GO:0008168: methyltransferase activity3.40E-04
22GO:0004568: chitinase activity4.74E-04
23GO:0008171: O-methyltransferase activity4.74E-04
24GO:0004775: succinate-CoA ligase (ADP-forming) activity5.49E-04
25GO:0045140: inositol phosphoceramide synthase activity5.49E-04
26GO:0004061: arylformamidase activity5.49E-04
27GO:0043141: ATP-dependent 5'-3' DNA helicase activity5.49E-04
28GO:0048531: beta-1,3-galactosyltransferase activity5.49E-04
29GO:0004385: guanylate kinase activity5.49E-04
30GO:0004776: succinate-CoA ligase (GDP-forming) activity5.49E-04
31GO:0008757: S-adenosylmethionine-dependent methyltransferase activity5.82E-04
32GO:0050897: cobalt ion binding7.44E-04
33GO:0003746: translation elongation factor activity8.35E-04
34GO:0005506: iron ion binding8.40E-04
35GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen8.49E-04
36GO:0080054: low-affinity nitrate transmembrane transporter activity8.92E-04
37GO:0004324: ferredoxin-NADP+ reductase activity8.92E-04
38GO:0004148: dihydrolipoyl dehydrogenase activity8.92E-04
39GO:0008061: chitin binding8.92E-04
40GO:0003840: gamma-glutamyltransferase activity8.92E-04
41GO:0036374: glutathione hydrolase activity8.92E-04
42GO:0004383: guanylate cyclase activity8.92E-04
43GO:0016805: dipeptidase activity8.92E-04
44GO:0004364: glutathione transferase activity1.09E-03
45GO:0043023: ribosomal large subunit binding1.27E-03
46GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.27E-03
47GO:0004449: isocitrate dehydrogenase (NAD+) activity1.27E-03
48GO:0016656: monodehydroascorbate reductase (NADH) activity1.27E-03
49GO:0005507: copper ion binding1.49E-03
50GO:0004834: tryptophan synthase activity1.70E-03
51GO:0004031: aldehyde oxidase activity1.70E-03
52GO:0050302: indole-3-acetaldehyde oxidase activity1.70E-03
53GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.17E-03
54GO:0004040: amidase activity2.17E-03
55GO:0005496: steroid binding2.17E-03
56GO:0030976: thiamine pyrophosphate binding2.67E-03
57GO:0004029: aldehyde dehydrogenase (NAD) activity2.67E-03
58GO:0016746: transferase activity, transferring acyl groups2.70E-03
59GO:0005242: inward rectifier potassium channel activity3.21E-03
60GO:0004656: procollagen-proline 4-dioxygenase activity3.21E-03
61GO:0004143: diacylglycerol kinase activity3.79E-03
62GO:0008235: metalloexopeptidase activity3.79E-03
63GO:0008143: poly(A) binding3.79E-03
64GO:0008320: protein transmembrane transporter activity3.79E-03
65GO:0043295: glutathione binding3.79E-03
66GO:0005524: ATP binding3.92E-03
67GO:0004034: aldose 1-epimerase activity4.39E-03
68GO:0004033: aldo-keto reductase (NADP) activity4.39E-03
69GO:0043022: ribosome binding4.39E-03
70GO:0030247: polysaccharide binding4.49E-03
71GO:0003843: 1,3-beta-D-glucan synthase activity5.03E-03
72GO:0019825: oxygen binding5.43E-03
73GO:0071949: FAD binding5.70E-03
74GO:0003678: DNA helicase activity5.70E-03
75GO:0030955: potassium ion binding6.40E-03
76GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.40E-03
77GO:0004743: pyruvate kinase activity6.40E-03
78GO:0004713: protein tyrosine kinase activity7.12E-03
79GO:0020037: heme binding7.34E-03
80GO:0001054: RNA polymerase I activity7.88E-03
81GO:0004177: aminopeptidase activity7.88E-03
82GO:0004129: cytochrome-c oxidase activity7.88E-03
83GO:0005388: calcium-transporting ATPase activity9.47E-03
84GO:0004022: alcohol dehydrogenase (NAD) activity9.47E-03
85GO:0031624: ubiquitin conjugating enzyme binding1.03E-02
86GO:0004175: endopeptidase activity1.03E-02
87GO:0004674: protein serine/threonine kinase activity1.08E-02
88GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.10E-02
89GO:0004867: serine-type endopeptidase inhibitor activity1.12E-02
90GO:0061630: ubiquitin protein ligase activity1.27E-02
91GO:0051536: iron-sulfur cluster binding1.30E-02
92GO:0031418: L-ascorbic acid binding1.30E-02
93GO:0005528: FK506 binding1.30E-02
94GO:0005216: ion channel activity1.39E-02
95GO:0015035: protein disulfide oxidoreductase activity1.61E-02
96GO:0016491: oxidoreductase activity1.61E-02
97GO:0008026: ATP-dependent helicase activity1.66E-02
98GO:0003756: protein disulfide isomerase activity1.79E-02
99GO:0030551: cyclic nucleotide binding2.01E-02
100GO:0016301: kinase activity2.03E-02
101GO:0001085: RNA polymerase II transcription factor binding2.12E-02
102GO:0016853: isomerase activity2.23E-02
103GO:0010181: FMN binding2.23E-02
104GO:0004872: receptor activity2.34E-02
105GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.53E-02
106GO:0004806: triglyceride lipase activity3.59E-02
107GO:0004004: ATP-dependent RNA helicase activity3.59E-02
108GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.86E-02
109GO:0000166: nucleotide binding4.00E-02
110GO:0000287: magnesium ion binding4.11E-02
111GO:0004222: metalloendopeptidase activity4.14E-02
112GO:0030145: manganese ion binding4.28E-02
113GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.28E-02
114GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.56E-02
115GO:0000149: SNARE binding4.86E-02
116GO:0004712: protein serine/threonine/tyrosine kinase activity4.86E-02
RankGO TermAdjusted P value
1GO:0034709: methylosome0.00E+00
2GO:0019034: viral replication complex0.00E+00
3GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
4GO:0005829: cytosol7.52E-08
5GO:0005730: nucleolus6.16E-05
6GO:0030687: preribosome, large subunit precursor1.80E-04
7GO:0005783: endoplasmic reticulum2.39E-04
8GO:0032783: ELL-EAF complex2.48E-04
9GO:0045252: oxoglutarate dehydrogenase complex2.48E-04
10GO:0005950: anthranilate synthase complex5.49E-04
11GO:0005901: caveola5.49E-04
12GO:0030134: ER to Golgi transport vesicle5.49E-04
13GO:0005773: vacuole7.50E-04
14GO:0034715: pICln-Sm protein complex8.92E-04
15GO:0005853: eukaryotic translation elongation factor 1 complex8.92E-04
16GO:0016020: membrane1.02E-03
17GO:0005746: mitochondrial respiratory chain2.17E-03
18GO:0008250: oligosaccharyltransferase complex2.17E-03
19GO:0005789: endoplasmic reticulum membrane2.19E-03
20GO:0005886: plasma membrane2.28E-03
21GO:0016272: prefoldin complex3.21E-03
22GO:0034399: nuclear periphery4.39E-03
23GO:0000326: protein storage vacuole5.03E-03
24GO:0000148: 1,3-beta-D-glucan synthase complex5.03E-03
25GO:0010494: cytoplasmic stress granule5.70E-03
26GO:0005736: DNA-directed RNA polymerase I complex5.70E-03
27GO:0030176: integral component of endoplasmic reticulum membrane1.12E-02
28GO:0043234: protein complex1.21E-02
29GO:0005774: vacuolar membrane1.28E-02
30GO:0016021: integral component of membrane1.37E-02
31GO:0009505: plant-type cell wall1.48E-02
32GO:0012505: endomembrane system1.52E-02
33GO:0009504: cell plate2.34E-02
34GO:0005759: mitochondrial matrix2.47E-02
35GO:0032580: Golgi cisterna membrane2.82E-02
36GO:0005788: endoplasmic reticulum lumen3.32E-02
37GO:0005667: transcription factor complex3.46E-02
38GO:0046658: anchored component of plasma membrane3.59E-02
39GO:0000151: ubiquitin ligase complex3.86E-02
Gene type



Gene DE type