GO Enrichment Analysis of Co-expressed Genes with
AT2G30170
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 7 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 8 | GO:0015979: photosynthesis | 1.61E-09 |
| 9 | GO:0042549: photosystem II stabilization | 3.36E-05 |
| 10 | GO:0032544: plastid translation | 1.04E-04 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.27E-04 |
| 12 | GO:0000481: maturation of 5S rRNA | 1.27E-04 |
| 13 | GO:1904964: positive regulation of phytol biosynthetic process | 1.27E-04 |
| 14 | GO:0042371: vitamin K biosynthetic process | 1.27E-04 |
| 15 | GO:0034337: RNA folding | 1.27E-04 |
| 16 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.27E-04 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 2.14E-04 |
| 18 | GO:0006094: gluconeogenesis | 2.83E-04 |
| 19 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.94E-04 |
| 20 | GO:0034755: iron ion transmembrane transport | 2.94E-04 |
| 21 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.94E-04 |
| 22 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.94E-04 |
| 23 | GO:0010207: photosystem II assembly | 3.20E-04 |
| 24 | GO:0009658: chloroplast organization | 4.47E-04 |
| 25 | GO:0006954: inflammatory response | 4.86E-04 |
| 26 | GO:0006518: peptide metabolic process | 4.86E-04 |
| 27 | GO:0006000: fructose metabolic process | 4.86E-04 |
| 28 | GO:0009800: cinnamic acid biosynthetic process | 6.95E-04 |
| 29 | GO:2001141: regulation of RNA biosynthetic process | 6.95E-04 |
| 30 | GO:0010371: regulation of gibberellin biosynthetic process | 6.95E-04 |
| 31 | GO:0009152: purine ribonucleotide biosynthetic process | 6.95E-04 |
| 32 | GO:0046653: tetrahydrofolate metabolic process | 6.95E-04 |
| 33 | GO:0000413: protein peptidyl-prolyl isomerization | 8.09E-04 |
| 34 | GO:0015994: chlorophyll metabolic process | 9.21E-04 |
| 35 | GO:0080110: sporopollenin biosynthetic process | 1.16E-03 |
| 36 | GO:0006564: L-serine biosynthetic process | 1.16E-03 |
| 37 | GO:0010236: plastoquinone biosynthetic process | 1.16E-03 |
| 38 | GO:0031365: N-terminal protein amino acid modification | 1.16E-03 |
| 39 | GO:0008152: metabolic process | 1.29E-03 |
| 40 | GO:0006828: manganese ion transport | 1.43E-03 |
| 41 | GO:0006559: L-phenylalanine catabolic process | 1.43E-03 |
| 42 | GO:0032973: amino acid export | 1.43E-03 |
| 43 | GO:0010190: cytochrome b6f complex assembly | 1.43E-03 |
| 44 | GO:0000470: maturation of LSU-rRNA | 1.43E-03 |
| 45 | GO:0016554: cytidine to uridine editing | 1.43E-03 |
| 46 | GO:0042372: phylloquinone biosynthetic process | 1.71E-03 |
| 47 | GO:0009082: branched-chain amino acid biosynthetic process | 1.71E-03 |
| 48 | GO:0009099: valine biosynthetic process | 1.71E-03 |
| 49 | GO:0010019: chloroplast-nucleus signaling pathway | 1.71E-03 |
| 50 | GO:0015995: chlorophyll biosynthetic process | 1.78E-03 |
| 51 | GO:0018298: protein-chromophore linkage | 1.97E-03 |
| 52 | GO:0010196: nonphotochemical quenching | 2.01E-03 |
| 53 | GO:0006400: tRNA modification | 2.01E-03 |
| 54 | GO:0009772: photosynthetic electron transport in photosystem II | 2.01E-03 |
| 55 | GO:0043090: amino acid import | 2.01E-03 |
| 56 | GO:0032508: DNA duplex unwinding | 2.32E-03 |
| 57 | GO:0048564: photosystem I assembly | 2.32E-03 |
| 58 | GO:0009637: response to blue light | 2.48E-03 |
| 59 | GO:0034599: cellular response to oxidative stress | 2.59E-03 |
| 60 | GO:0009657: plastid organization | 2.65E-03 |
| 61 | GO:0009097: isoleucine biosynthetic process | 2.65E-03 |
| 62 | GO:0017004: cytochrome complex assembly | 2.65E-03 |
| 63 | GO:0006002: fructose 6-phosphate metabolic process | 2.65E-03 |
| 64 | GO:0071482: cellular response to light stimulus | 2.65E-03 |
| 65 | GO:0042254: ribosome biogenesis | 2.81E-03 |
| 66 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 3.00E-03 |
| 67 | GO:0080144: amino acid homeostasis | 3.00E-03 |
| 68 | GO:0034765: regulation of ion transmembrane transport | 3.00E-03 |
| 69 | GO:0000373: Group II intron splicing | 3.00E-03 |
| 70 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.00E-03 |
| 71 | GO:0006098: pentose-phosphate shunt | 3.00E-03 |
| 72 | GO:0010114: response to red light | 3.19E-03 |
| 73 | GO:1900865: chloroplast RNA modification | 3.36E-03 |
| 74 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.36E-03 |
| 75 | GO:0009098: leucine biosynthetic process | 3.36E-03 |
| 76 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.73E-03 |
| 77 | GO:0008285: negative regulation of cell proliferation | 4.12E-03 |
| 78 | GO:0006415: translational termination | 4.12E-03 |
| 79 | GO:0043085: positive regulation of catalytic activity | 4.12E-03 |
| 80 | GO:0006879: cellular iron ion homeostasis | 4.12E-03 |
| 81 | GO:0006352: DNA-templated transcription, initiation | 4.12E-03 |
| 82 | GO:0009750: response to fructose | 4.12E-03 |
| 83 | GO:0006816: calcium ion transport | 4.12E-03 |
| 84 | GO:0005983: starch catabolic process | 4.52E-03 |
| 85 | GO:0010628: positive regulation of gene expression | 4.93E-03 |
| 86 | GO:0006006: glucose metabolic process | 4.93E-03 |
| 87 | GO:0005986: sucrose biosynthetic process | 4.93E-03 |
| 88 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.19E-03 |
| 89 | GO:0010073: meristem maintenance | 7.19E-03 |
| 90 | GO:0016575: histone deacetylation | 7.19E-03 |
| 91 | GO:0061077: chaperone-mediated protein folding | 7.68E-03 |
| 92 | GO:0016226: iron-sulfur cluster assembly | 8.18E-03 |
| 93 | GO:0010227: floral organ abscission | 8.69E-03 |
| 94 | GO:0010584: pollen exine formation | 9.21E-03 |
| 95 | GO:0006413: translational initiation | 9.81E-03 |
| 96 | GO:0042391: regulation of membrane potential | 1.03E-02 |
| 97 | GO:0006662: glycerol ether metabolic process | 1.09E-02 |
| 98 | GO:0006814: sodium ion transport | 1.14E-02 |
| 99 | GO:0000302: response to reactive oxygen species | 1.26E-02 |
| 100 | GO:0071805: potassium ion transmembrane transport | 1.50E-02 |
| 101 | GO:0001666: response to hypoxia | 1.63E-02 |
| 102 | GO:0006457: protein folding | 1.70E-02 |
| 103 | GO:0042128: nitrate assimilation | 1.77E-02 |
| 104 | GO:0016311: dephosphorylation | 1.90E-02 |
| 105 | GO:0009817: defense response to fungus, incompatible interaction | 1.97E-02 |
| 106 | GO:0010218: response to far red light | 2.11E-02 |
| 107 | GO:0009631: cold acclimation | 2.19E-02 |
| 108 | GO:0009853: photorespiration | 2.33E-02 |
| 109 | GO:0045454: cell redox homeostasis | 2.43E-02 |
| 110 | GO:0009640: photomorphogenesis | 2.80E-02 |
| 111 | GO:0051707: response to other organism | 2.80E-02 |
| 112 | GO:0006855: drug transmembrane transport | 3.12E-02 |
| 113 | GO:0006412: translation | 3.30E-02 |
| 114 | GO:0006364: rRNA processing | 3.46E-02 |
| 115 | GO:0006813: potassium ion transport | 3.46E-02 |
| 116 | GO:0006096: glycolytic process | 3.89E-02 |
| 117 | GO:0006396: RNA processing | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 6 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 7 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 8 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.96E-08 |
| 9 | GO:0005528: FK506 binding | 2.69E-07 |
| 10 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.27E-04 |
| 11 | GO:0016630: protochlorophyllide reductase activity | 2.94E-04 |
| 12 | GO:0047746: chlorophyllase activity | 2.94E-04 |
| 13 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.94E-04 |
| 14 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.94E-04 |
| 15 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.86E-04 |
| 16 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.86E-04 |
| 17 | GO:0045548: phenylalanine ammonia-lyase activity | 4.86E-04 |
| 18 | GO:0048487: beta-tubulin binding | 6.95E-04 |
| 19 | GO:0016149: translation release factor activity, codon specific | 6.95E-04 |
| 20 | GO:0052656: L-isoleucine transaminase activity | 6.95E-04 |
| 21 | GO:0043023: ribosomal large subunit binding | 6.95E-04 |
| 22 | GO:0052654: L-leucine transaminase activity | 6.95E-04 |
| 23 | GO:0008097: 5S rRNA binding | 6.95E-04 |
| 24 | GO:0008508: bile acid:sodium symporter activity | 6.95E-04 |
| 25 | GO:0052655: L-valine transaminase activity | 6.95E-04 |
| 26 | GO:0004084: branched-chain-amino-acid transaminase activity | 9.21E-04 |
| 27 | GO:0043495: protein anchor | 9.21E-04 |
| 28 | GO:0004659: prenyltransferase activity | 9.21E-04 |
| 29 | GO:0001053: plastid sigma factor activity | 9.21E-04 |
| 30 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 9.21E-04 |
| 31 | GO:0016987: sigma factor activity | 9.21E-04 |
| 32 | GO:0019843: rRNA binding | 1.06E-03 |
| 33 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.16E-03 |
| 34 | GO:0003959: NADPH dehydrogenase activity | 1.16E-03 |
| 35 | GO:0004130: cytochrome-c peroxidase activity | 1.43E-03 |
| 36 | GO:0016688: L-ascorbate peroxidase activity | 1.43E-03 |
| 37 | GO:0004332: fructose-bisphosphate aldolase activity | 1.43E-03 |
| 38 | GO:0016168: chlorophyll binding | 1.60E-03 |
| 39 | GO:0005509: calcium ion binding | 1.66E-03 |
| 40 | GO:0005242: inward rectifier potassium channel activity | 1.71E-03 |
| 41 | GO:0019899: enzyme binding | 2.01E-03 |
| 42 | GO:0008235: metalloexopeptidase activity | 2.01E-03 |
| 43 | GO:0004222: metalloendopeptidase activity | 2.17E-03 |
| 44 | GO:0003824: catalytic activity | 2.25E-03 |
| 45 | GO:0004033: aldo-keto reductase (NADP) activity | 2.32E-03 |
| 46 | GO:0043022: ribosome binding | 2.32E-03 |
| 47 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.65E-03 |
| 48 | GO:0003747: translation release factor activity | 3.00E-03 |
| 49 | GO:0005384: manganese ion transmembrane transporter activity | 3.36E-03 |
| 50 | GO:0005381: iron ion transmembrane transporter activity | 3.36E-03 |
| 51 | GO:0008047: enzyme activator activity | 3.73E-03 |
| 52 | GO:0015386: potassium:proton antiporter activity | 4.12E-03 |
| 53 | GO:0004177: aminopeptidase activity | 4.12E-03 |
| 54 | GO:0008081: phosphoric diester hydrolase activity | 4.93E-03 |
| 55 | GO:0015095: magnesium ion transmembrane transporter activity | 4.93E-03 |
| 56 | GO:0031072: heat shock protein binding | 4.93E-03 |
| 57 | GO:0031409: pigment binding | 6.25E-03 |
| 58 | GO:0051536: iron-sulfur cluster binding | 6.71E-03 |
| 59 | GO:0004407: histone deacetylase activity | 6.71E-03 |
| 60 | GO:0015079: potassium ion transmembrane transporter activity | 7.19E-03 |
| 61 | GO:0016787: hydrolase activity | 7.24E-03 |
| 62 | GO:0022891: substrate-specific transmembrane transporter activity | 8.69E-03 |
| 63 | GO:0003723: RNA binding | 9.46E-03 |
| 64 | GO:0047134: protein-disulfide reductase activity | 9.75E-03 |
| 65 | GO:0030551: cyclic nucleotide binding | 1.03E-02 |
| 66 | GO:0050662: coenzyme binding | 1.14E-02 |
| 67 | GO:0004791: thioredoxin-disulfide reductase activity | 1.14E-02 |
| 68 | GO:0003743: translation initiation factor activity | 1.23E-02 |
| 69 | GO:0004518: nuclease activity | 1.32E-02 |
| 70 | GO:0042802: identical protein binding | 1.34E-02 |
| 71 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.38E-02 |
| 72 | GO:0008237: metallopeptidase activity | 1.50E-02 |
| 73 | GO:0016597: amino acid binding | 1.57E-02 |
| 74 | GO:0016788: hydrolase activity, acting on ester bonds | 1.66E-02 |
| 75 | GO:0015238: drug transmembrane transporter activity | 2.04E-02 |
| 76 | GO:0003735: structural constituent of ribosome | 2.18E-02 |
| 77 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.56E-02 |
| 78 | GO:0050661: NADP binding | 2.56E-02 |
| 79 | GO:0046872: metal ion binding | 2.57E-02 |
| 80 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.96E-02 |
| 81 | GO:0043621: protein self-association | 2.96E-02 |
| 82 | GO:0051287: NAD binding | 3.20E-02 |
| 83 | GO:0004519: endonuclease activity | 3.26E-02 |
| 84 | GO:0005215: transporter activity | 3.38E-02 |
| 85 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.46E-02 |
| 86 | GO:0015171: amino acid transmembrane transporter activity | 3.72E-02 |
| 87 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.16E-02 |
| 88 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.16E-02 |
| 89 | GO:0051082: unfolded protein binding | 4.44E-02 |
| 90 | GO:0015035: protein disulfide oxidoreductase activity | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 6.17E-46 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 3.16E-21 |
| 3 | GO:0009543: chloroplast thylakoid lumen | 7.78E-17 |
| 4 | GO:0009579: thylakoid | 2.32E-15 |
| 5 | GO:0009570: chloroplast stroma | 3.57E-15 |
| 6 | GO:0031977: thylakoid lumen | 1.01E-13 |
| 7 | GO:0009941: chloroplast envelope | 3.93E-12 |
| 8 | GO:0009534: chloroplast thylakoid | 5.52E-10 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 3.86E-09 |
| 10 | GO:0019898: extrinsic component of membrane | 3.28E-08 |
| 11 | GO:0031969: chloroplast membrane | 4.42E-07 |
| 12 | GO:0030095: chloroplast photosystem II | 3.20E-04 |
| 13 | GO:0042651: thylakoid membrane | 4.91E-04 |
| 14 | GO:0009523: photosystem II | 9.96E-04 |
| 15 | GO:0005840: ribosome | 2.07E-03 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.00E-03 |
| 17 | GO:0032040: small-subunit processome | 4.52E-03 |
| 18 | GO:0030076: light-harvesting complex | 5.80E-03 |
| 19 | GO:0009522: photosystem I | 1.14E-02 |
| 20 | GO:0030529: intracellular ribonucleoprotein complex | 1.63E-02 |
| 21 | GO:0015934: large ribosomal subunit | 2.19E-02 |
| 22 | GO:0005856: cytoskeleton | 3.04E-02 |
| 23 | GO:0043231: intracellular membrane-bounded organelle | 3.30E-02 |
| 24 | GO:0016020: membrane | 3.32E-02 |
| 25 | GO:0009706: chloroplast inner membrane | 4.44E-02 |