co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G30150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0006573: valine metabolic process	0.00E+00
5	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
6	GO:0051881: regulation of mitochondrial membrane potential	0.00E+00
7	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
8	GO:0045740: positive regulation of DNA replication	0.00E+00
9	GO:0019253: reductive pentose-phosphate cycle	6.02E-09
10	GO:0018119: peptidyl-cysteine S-nitrosylation	1.37E-05
11	GO:0019464: glycine decarboxylation via glycine cleavage system	2.94E-05
12	GO:0009765: photosynthesis, light harvesting	2.94E-05
13	GO:0006546: glycine catabolic process	2.94E-05
14	GO:0006810: transport	6.12E-05
15	GO:0016117: carotenoid biosynthetic process	1.04E-04
16	GO:0008610: lipid biosynthetic process	1.64E-04
17	GO:0052543: callose deposition in cell wall	1.64E-04
18	GO:1901349: glucosinolate transport	2.00E-04
19	GO:0090449: phloem glucosinolate loading	2.00E-04
20	GO:0006659: phosphatidylserine biosynthetic process	2.00E-04
21	GO:0006551: leucine metabolic process	2.00E-04
22	GO:0000066: mitochondrial ornithine transport	2.00E-04
23	GO:0046686: response to cadmium ion	3.24E-04
24	GO:0000272: polysaccharide catabolic process	4.04E-04
25	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.48E-04
26	GO:1904143: positive regulation of carotenoid biosynthetic process	4.48E-04
27	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.48E-04
28	GO:2000123: positive regulation of stomatal complex development	4.48E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.48E-04
30	GO:0043039: tRNA aminoacylation	4.48E-04
31	GO:0009767: photosynthetic electron transport chain	5.25E-04
32	GO:0006839: mitochondrial transport	6.66E-04
33	GO:0006000: fructose metabolic process	7.29E-04
34	GO:0071492: cellular response to UV-A	7.29E-04
35	GO:0006696: ergosterol biosynthetic process	7.29E-04
36	GO:0005977: glycogen metabolic process	7.29E-04
37	GO:0006011: UDP-glucose metabolic process	7.29E-04
38	GO:0009744: response to sucrose	7.78E-04
39	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.04E-03
40	GO:0033014: tetrapyrrole biosynthetic process	1.04E-03
41	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.04E-03
42	GO:0045727: positive regulation of translation	1.38E-03
43	GO:2000038: regulation of stomatal complex development	1.38E-03
44	GO:0006021: inositol biosynthetic process	1.38E-03
45	GO:0009902: chloroplast relocation	1.38E-03
46	GO:0006542: glutamine biosynthetic process	1.38E-03
47	GO:0019676: ammonia assimilation cycle	1.38E-03
48	GO:0071486: cellular response to high light intensity	1.38E-03
49	GO:0006096: glycolytic process	1.39E-03
50	GO:0045489: pectin biosynthetic process	1.58E-03
51	GO:0010375: stomatal complex patterning	1.76E-03
52	GO:0016120: carotene biosynthetic process	1.76E-03
53	GO:0010236: plastoquinone biosynthetic process	1.76E-03
54	GO:0016123: xanthophyll biosynthetic process	1.76E-03
55	GO:0070814: hydrogen sulfide biosynthetic process	2.17E-03
56	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.17E-03
57	GO:0016554: cytidine to uridine editing	2.17E-03
58	GO:0009117: nucleotide metabolic process	2.17E-03
59	GO:0010942: positive regulation of cell death	2.17E-03
60	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.17E-03
61	GO:1901259: chloroplast rRNA processing	2.60E-03
62	GO:0009082: branched-chain amino acid biosynthetic process	2.60E-03
63	GO:0017148: negative regulation of translation	2.60E-03
64	GO:0009099: valine biosynthetic process	2.60E-03
65	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.60E-03
66	GO:0009409: response to cold	2.92E-03
67	GO:0000082: G1/S transition of mitotic cell cycle	3.06E-03
68	GO:0007050: cell cycle arrest	3.06E-03
69	GO:0008152: metabolic process	3.36E-03
70	GO:0007155: cell adhesion	3.55E-03
71	GO:0018298: protein-chromophore linkage	3.65E-03
72	GO:0022900: electron transport chain	4.06E-03
73	GO:0048193: Golgi vesicle transport	4.06E-03
74	GO:0009097: isoleucine biosynthetic process	4.06E-03
75	GO:0032544: plastid translation	4.06E-03
76	GO:0006002: fructose 6-phosphate metabolic process	4.06E-03
77	GO:0006783: heme biosynthetic process	4.60E-03
78	GO:0006754: ATP biosynthetic process	4.60E-03
79	GO:0048589: developmental growth	4.60E-03
80	GO:0009056: catabolic process	4.60E-03
81	GO:0016051: carbohydrate biosynthetic process	4.61E-03
82	GO:0009853: photorespiration	4.61E-03
83	GO:0006779: porphyrin-containing compound biosynthetic process	5.15E-03
84	GO:1900865: chloroplast RNA modification	5.15E-03
85	GO:0051555: flavonol biosynthetic process	5.74E-03
86	GO:0009970: cellular response to sulfate starvation	5.74E-03
87	GO:0000103: sulfate assimilation	5.74E-03
88	GO:0010192: mucilage biosynthetic process	5.74E-03
89	GO:0009735: response to cytokinin	6.04E-03
90	GO:0009773: photosynthetic electron transport in photosystem I	6.34E-03
91	GO:0019684: photosynthesis, light reaction	6.34E-03
92	GO:0009416: response to light stimulus	6.92E-03
93	GO:0010102: lateral root morphogenesis	7.61E-03
94	GO:0006006: glucose metabolic process	7.61E-03
95	GO:0009725: response to hormone	7.61E-03
96	GO:0006094: gluconeogenesis	7.61E-03
97	GO:0005986: sucrose biosynthetic process	7.61E-03
98	GO:0080167: response to karrikin	8.02E-03
99	GO:0010020: chloroplast fission	8.28E-03
100	GO:0010207: photosystem II assembly	8.28E-03
101	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.37E-03
102	GO:0015979: photosynthesis	9.49E-03
103	GO:0009833: plant-type primary cell wall biogenesis	9.68E-03
104	GO:0006833: water transport	9.68E-03
105	GO:0007010: cytoskeleton organization	1.04E-02
106	GO:0006418: tRNA aminoacylation for protein translation	1.12E-02
107	GO:0007017: microtubule-based process	1.12E-02
108	GO:0009768: photosynthesis, light harvesting in photosystem I	1.12E-02
109	GO:0080092: regulation of pollen tube growth	1.27E-02
110	GO:0009294: DNA mediated transformation	1.35E-02
111	GO:0040007: growth	1.35E-02
112	GO:0042631: cellular response to water deprivation	1.60E-02
113	GO:0000271: polysaccharide biosynthetic process	1.60E-02
114	GO:0034220: ion transmembrane transport	1.60E-02
115	GO:0009741: response to brassinosteroid	1.69E-02
116	GO:0009651: response to salt stress	1.71E-02
117	GO:0009646: response to absence of light	1.78E-02
118	GO:0009791: post-embryonic development	1.87E-02
119	GO:0019252: starch biosynthetic process	1.87E-02
120	GO:0008654: phospholipid biosynthetic process	1.87E-02
121	GO:0045490: pectin catabolic process	1.98E-02
122	GO:0042742: defense response to bacterium	2.01E-02
123	GO:0071555: cell wall organization	2.01E-02
124	GO:0010583: response to cyclopentenone	2.06E-02
125	GO:0032502: developmental process	2.06E-02
126	GO:0007267: cell-cell signaling	2.35E-02
127	GO:0016126: sterol biosynthetic process	2.55E-02
128	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.66E-02
129	GO:0009611: response to wounding	2.79E-02
130	GO:0009658: chloroplast organization	3.07E-02
131	GO:0009817: defense response to fungus, incompatible interaction	3.09E-02
132	GO:0030244: cellulose biosynthetic process	3.09E-02
133	GO:0010311: lateral root formation	3.20E-02
134	GO:0009832: plant-type cell wall biogenesis	3.20E-02
135	GO:0048767: root hair elongation	3.20E-02
136	GO:0009407: toxin catabolic process	3.31E-02
137	GO:0010218: response to far red light	3.31E-02
138	GO:0048527: lateral root development	3.42E-02
139	GO:0007568: aging	3.42E-02
140	GO:0009637: response to blue light	3.65E-02
141	GO:0005975: carbohydrate metabolic process	3.70E-02
142	GO:0006631: fatty acid metabolic process	4.13E-02
143	GO:0055114: oxidation-reduction process	4.22E-02
144	GO:0010114: response to red light	4.37E-02
145	GO:0051707: response to other organism	4.37E-02
146	GO:0042546: cell wall biogenesis	4.50E-02
147	GO:0045454: cell redox homeostasis	4.54E-02
148	GO:0009644: response to high light intensity	4.62E-02
149	GO:0009636: response to toxic substance	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
3	GO:0008962: phosphatidylglycerophosphatase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
6	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
9	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
10	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
11	GO:0004618: phosphoglycerate kinase activity	1.89E-06
12	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.60E-05
13	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	9.69E-05
14	GO:0004560: alpha-L-fucosidase activity	2.00E-04
15	GO:0004831: tyrosine-tRNA ligase activity	2.00E-04
16	GO:0004325: ferrochelatase activity	2.00E-04
17	GO:0051996: squalene synthase activity	2.00E-04
18	GO:0010313: phytochrome binding	2.00E-04
19	GO:0003984: acetolactate synthase activity	2.00E-04
20	GO:0090448: glucosinolate:proton symporter activity	2.00E-04
21	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.00E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.48E-04
23	GO:0000064: L-ornithine transmembrane transporter activity	4.48E-04
24	GO:0004512: inositol-3-phosphate synthase activity	4.48E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.48E-04
26	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	4.48E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.48E-04
28	GO:0010297: heteropolysaccharide binding	4.48E-04
29	GO:0004047: aminomethyltransferase activity	4.48E-04
30	GO:0070330: aromatase activity	7.29E-04
31	GO:0003913: DNA photolyase activity	7.29E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	7.29E-04
33	GO:0004751: ribose-5-phosphate isomerase activity	7.29E-04
34	GO:0004781: sulfate adenylyltransferase (ATP) activity	7.29E-04
35	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	7.29E-04
36	GO:0048027: mRNA 5'-UTR binding	1.04E-03
37	GO:0035529: NADH pyrophosphatase activity	1.04E-03
38	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.04E-03
39	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.04E-03
40	GO:0001872: (1->3)-beta-D-glucan binding	1.04E-03
41	GO:0016788: hydrolase activity, acting on ester bonds	1.19E-03
42	GO:0008453: alanine-glyoxylate transaminase activity	1.38E-03
43	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.38E-03
44	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.38E-03
45	GO:0008374: O-acyltransferase activity	1.76E-03
46	GO:0018685: alkane 1-monooxygenase activity	1.76E-03
47	GO:0004356: glutamate-ammonia ligase activity	1.76E-03
48	GO:0019901: protein kinase binding	1.82E-03
49	GO:0052689: carboxylic ester hydrolase activity	1.86E-03
50	GO:0048038: quinone binding	1.95E-03
51	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.17E-03
52	GO:0102229: amylopectin maltohydrolase activity	2.17E-03
53	GO:0042578: phosphoric ester hydrolase activity	2.17E-03
54	GO:0080030: methyl indole-3-acetate esterase activity	2.17E-03
55	GO:0019843: rRNA binding	2.33E-03
56	GO:0005200: structural constituent of cytoskeleton	2.50E-03
57	GO:0016161: beta-amylase activity	2.60E-03
58	GO:0051753: mannan synthase activity	2.60E-03
59	GO:0051920: peroxiredoxin activity	2.60E-03
60	GO:0016597: amino acid binding	2.65E-03
61	GO:0016168: chlorophyll binding	2.96E-03
62	GO:0009881: photoreceptor activity	3.06E-03
63	GO:0043295: glutathione binding	3.06E-03
64	GO:0016209: antioxidant activity	3.55E-03
65	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.60E-03
66	GO:0016757: transferase activity, transferring glycosyl groups	6.27E-03
67	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.34E-03
68	GO:0016787: hydrolase activity	7.20E-03
69	GO:0004565: beta-galactosidase activity	7.61E-03
70	GO:0031409: pigment binding	9.68E-03
71	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.04E-02
72	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.04E-02
73	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.27E-02
74	GO:0030570: pectate lyase activity	1.35E-02
75	GO:0016760: cellulose synthase (UDP-forming) activity	1.35E-02
76	GO:0022891: substrate-specific transmembrane transporter activity	1.35E-02
77	GO:0004812: aminoacyl-tRNA ligase activity	1.52E-02
78	GO:0050662: coenzyme binding	1.78E-02
79	GO:0004872: receptor activity	1.87E-02
80	GO:0004518: nuclease activity	2.06E-02
81	GO:0008194: UDP-glycosyltransferase activity	2.22E-02
82	GO:0016759: cellulose synthase activity	2.25E-02
83	GO:0008483: transaminase activity	2.35E-02
84	GO:0015250: water channel activity	2.55E-02
85	GO:0030247: polysaccharide binding	2.87E-02
86	GO:0016491: oxidoreductase activity	3.01E-02
87	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.31E-02
88	GO:0050897: cobalt ion binding	3.42E-02
89	GO:0016740: transferase activity	3.47E-02
90	GO:0004672: protein kinase activity	3.53E-02
91	GO:0003746: translation elongation factor activity	3.65E-02
92	GO:0030246: carbohydrate binding	3.92E-02
93	GO:0050661: NADP binding	4.01E-02
94	GO:0004364: glutathione transferase activity	4.25E-02
95	GO:0051537: 2 iron, 2 sulfur cluster binding	4.62E-02
96	GO:0005198: structural molecule activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009571: proplastid stroma	0.00E+00
4	GO:0009507: chloroplast	3.21E-14
5	GO:0009570: chloroplast stroma	2.51E-12
6	GO:0009535: chloroplast thylakoid membrane	2.40E-11
7	GO:0009941: chloroplast envelope	6.01E-09
8	GO:0009579: thylakoid	1.86E-07
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.88E-06
10	GO:0010319: stromule	1.44E-05
11	GO:0048046: apoplast	1.57E-05
12	GO:0005960: glycine cleavage complex	1.60E-05
13	GO:0009654: photosystem II oxygen evolving complex	5.32E-05
14	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.48E-04
15	GO:0009534: chloroplast thylakoid	5.78E-04
16	GO:0030095: chloroplast photosystem II	5.92E-04
17	GO:0009505: plant-type cell wall	7.13E-04
18	GO:0005853: eukaryotic translation elongation factor 1 complex	7.29E-04
19	GO:0031225: anchored component of membrane	9.61E-04
20	GO:0031969: chloroplast membrane	1.60E-03
21	GO:0009506: plasmodesma	1.76E-03
22	GO:0055035: plastid thylakoid membrane	1.76E-03
23	GO:0009523: photosystem II	1.82E-03
24	GO:0019898: extrinsic component of membrane	1.82E-03
25	GO:0010287: plastoglobule	2.17E-03
26	GO:0010168: ER body	2.17E-03
27	GO:0009543: chloroplast thylakoid lumen	2.33E-03
28	GO:0009707: chloroplast outer membrane	3.65E-03
29	GO:0009539: photosystem II reaction center	4.06E-03
30	GO:0005794: Golgi apparatus	4.47E-03
31	GO:0045298: tubulin complex	4.60E-03
32	GO:0016324: apical plasma membrane	5.74E-03
33	GO:0005773: vacuole	6.17E-03
34	GO:0019013: viral nucleocapsid	7.61E-03
35	GO:0030176: integral component of endoplasmic reticulum membrane	8.97E-03
36	GO:0030076: light-harvesting complex	8.97E-03
37	GO:0005875: microtubule associated complex	9.68E-03
38	GO:0005576: extracellular region	1.11E-02
39	GO:0005743: mitochondrial inner membrane	1.20E-02
40	GO:0016021: integral component of membrane	1.23E-02
41	GO:0016020: membrane	1.60E-02
42	GO:0009522: photosystem I	1.78E-02
43	GO:0005618: cell wall	2.34E-02
44	GO:0005778: peroxisomal membrane	2.35E-02
45	GO:0046658: anchored component of plasma membrane	2.62E-02
46	GO:0009536: plastid	2.71E-02
47	GO:0000139: Golgi membrane	3.13E-02
48	GO:0000325: plant-type vacuole	3.42E-02
49	GO:0005829: cytosol	4.02E-02
50	GO:0031977: thylakoid lumen	4.13E-02
51	GO:0005856: cytoskeleton	4.75E-02