co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
2	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
3	GO:0010360: negative regulation of anion channel activity	0.00E+00
4	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
5	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
6	GO:0045185: maintenance of protein location	0.00E+00
7	GO:0006593: ornithine catabolic process	0.00E+00
8	GO:0032780: negative regulation of ATPase activity	0.00E+00
9	GO:0006482: protein demethylation	0.00E+00
10	GO:0001676: long-chain fatty acid metabolic process	1.44E-05
11	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	6.36E-05
12	GO:0006422: aspartyl-tRNA aminoacylation	1.88E-04
13	GO:0080173: male-female gamete recognition during double fertilization	1.88E-04
14	GO:0006481: C-terminal protein methylation	1.88E-04
15	GO:0033306: phytol metabolic process	1.88E-04
16	GO:1902361: mitochondrial pyruvate transmembrane transport	1.88E-04
17	GO:0051775: response to redox state	1.88E-04
18	GO:0019544: arginine catabolic process to glutamate	1.88E-04
19	GO:0071806: protein transmembrane transport	1.88E-04
20	GO:0080120: CAAX-box protein maturation	1.88E-04
21	GO:0071586: CAAX-box protein processing	1.88E-04
22	GO:0019521: D-gluconate metabolic process	4.24E-04
23	GO:0060919: auxin influx	4.24E-04
24	GO:0006850: mitochondrial pyruvate transport	4.24E-04
25	GO:0015865: purine nucleotide transport	4.24E-04
26	GO:0019441: tryptophan catabolic process to kynurenine	4.24E-04
27	GO:0009156: ribonucleoside monophosphate biosynthetic process	4.24E-04
28	GO:0015914: phospholipid transport	4.24E-04
29	GO:0015824: proline transport	4.24E-04
30	GO:0006631: fatty acid metabolic process	6.35E-04
31	GO:0008152: metabolic process	6.35E-04
32	GO:0051646: mitochondrion localization	6.92E-04
33	GO:0010359: regulation of anion channel activity	6.92E-04
34	GO:0051707: response to other organism	7.03E-04
35	GO:0046686: response to cadmium ion	9.57E-04
36	GO:0046902: regulation of mitochondrial membrane permeability	9.86E-04
37	GO:0030433: ubiquitin-dependent ERAD pathway	9.89E-04
38	GO:0009165: nucleotide biosynthetic process	1.31E-03
39	GO:0006542: glutamine biosynthetic process	1.31E-03
40	GO:0046777: protein autophosphorylation	1.56E-03
41	GO:0030308: negative regulation of cell growth	1.66E-03
42	GO:0006623: protein targeting to vacuole	1.68E-03
43	GO:0010315: auxin efflux	2.05E-03
44	GO:1902456: regulation of stomatal opening	2.05E-03
45	GO:0035435: phosphate ion transmembrane transport	2.05E-03
46	GO:0006796: phosphate-containing compound metabolic process	2.05E-03
47	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.05E-03
48	GO:1900425: negative regulation of defense response to bacterium	2.05E-03
49	GO:0006014: D-ribose metabolic process	2.05E-03
50	GO:0006561: proline biosynthetic process	2.05E-03
51	GO:0000911: cytokinesis by cell plate formation	2.46E-03
52	GO:0009612: response to mechanical stimulus	2.46E-03
53	GO:0006511: ubiquitin-dependent protein catabolic process	2.49E-03
54	GO:0050790: regulation of catalytic activity	2.90E-03
55	GO:0009395: phospholipid catabolic process	2.90E-03
56	GO:0006506: GPI anchor biosynthetic process	3.36E-03
57	GO:2000070: regulation of response to water deprivation	3.36E-03
58	GO:0006102: isocitrate metabolic process	3.36E-03
59	GO:0016559: peroxisome fission	3.36E-03
60	GO:0009699: phenylpropanoid biosynthetic process	3.84E-03
61	GO:0009051: pentose-phosphate shunt, oxidative branch	4.35E-03
62	GO:0006098: pentose-phosphate shunt	4.35E-03
63	GO:0019432: triglyceride biosynthetic process	4.35E-03
64	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.35E-03
65	GO:0090333: regulation of stomatal closure	4.35E-03
66	GO:0006099: tricarboxylic acid cycle	4.45E-03
67	GO:0006896: Golgi to vacuole transport	5.42E-03
68	GO:0043069: negative regulation of programmed cell death	5.42E-03
69	GO:0009738: abscisic acid-activated signaling pathway	5.81E-03
70	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.58E-03
71	GO:0000266: mitochondrial fission	6.58E-03
72	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	7.19E-03
73	GO:0006807: nitrogen compound metabolic process	7.19E-03
74	GO:0006626: protein targeting to mitochondrion	7.19E-03
75	GO:0006006: glucose metabolic process	7.19E-03
76	GO:0006094: gluconeogenesis	7.19E-03
77	GO:0015031: protein transport	7.63E-03
78	GO:0007034: vacuolar transport	7.82E-03
79	GO:0010540: basipetal auxin transport	7.82E-03
80	GO:0006096: glycolytic process	8.73E-03
81	GO:0000162: tryptophan biosynthetic process	9.14E-03
82	GO:0030150: protein import into mitochondrial matrix	9.83E-03
83	GO:0009116: nucleoside metabolic process	9.83E-03
84	GO:0018105: peptidyl-serine phosphorylation	1.08E-02
85	GO:0031408: oxylipin biosynthetic process	1.13E-02
86	GO:0009408: response to heat	1.19E-02
87	GO:0016226: iron-sulfur cluster assembly	1.20E-02
88	GO:0007005: mitochondrion organization	1.20E-02
89	GO:0080092: regulation of pollen tube growth	1.20E-02
90	GO:0006508: proteolysis	1.23E-02
91	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.43E-02
92	GO:0009651: response to salt stress	1.46E-02
93	GO:0042631: cellular response to water deprivation	1.51E-02
94	GO:0071472: cellular response to salt stress	1.60E-02
95	GO:0010154: fruit development	1.60E-02
96	GO:0048544: recognition of pollen	1.68E-02
97	GO:0061025: membrane fusion	1.68E-02
98	GO:0010183: pollen tube guidance	1.77E-02
99	GO:0019252: starch biosynthetic process	1.77E-02
100	GO:0006979: response to oxidative stress	1.80E-02
101	GO:0002229: defense response to oomycetes	1.85E-02
102	GO:0010193: response to ozone	1.85E-02
103	GO:0000302: response to reactive oxygen species	1.85E-02
104	GO:0010583: response to cyclopentenone	1.94E-02
105	GO:0009630: gravitropism	1.94E-02
106	GO:0030163: protein catabolic process	2.03E-02
107	GO:0006464: cellular protein modification process	2.13E-02
108	GO:0006904: vesicle docking involved in exocytosis	2.22E-02
109	GO:0016579: protein deubiquitination	2.31E-02
110	GO:0016310: phosphorylation	2.36E-02
111	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.51E-02
112	GO:0009816: defense response to bacterium, incompatible interaction	2.51E-02
113	GO:0042128: nitrate assimilation	2.61E-02
114	GO:0048767: root hair elongation	3.02E-02
115	GO:0010119: regulation of stomatal movement	3.23E-02
116	GO:0006865: amino acid transport	3.34E-02
117	GO:0055114: oxidation-reduction process	3.40E-02
118	GO:0016192: vesicle-mediated transport	3.68E-02
119	GO:0006839: mitochondrial transport	3.78E-02
120	GO:0006887: exocytosis	3.89E-02
121	GO:0042542: response to hydrogen peroxide	4.01E-02
122	GO:0009926: auxin polar transport	4.13E-02
123	GO:0009744: response to sucrose	4.13E-02
124	GO:0000209: protein polyubiquitination	4.24E-02
125	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.73E-02
126	GO:0042538: hyperosmotic salinity response	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
2	GO:0051723: protein methylesterase activity	0.00E+00
3	GO:0042030: ATPase inhibitor activity	0.00E+00
4	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
5	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
6	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
7	GO:0052642: lysophosphatidic acid phosphatase activity	0.00E+00
8	GO:0005496: steroid binding	4.30E-05
9	GO:0036402: proteasome-activating ATPase activity	6.36E-05
10	GO:0102391: decanoate--CoA ligase activity	8.84E-05
11	GO:0004467: long-chain fatty acid-CoA ligase activity	1.18E-04
12	GO:0005507: copper ion binding	1.49E-04
13	GO:0004815: aspartate-tRNA ligase activity	1.88E-04
14	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	1.88E-04
15	GO:0010209: vacuolar sorting signal binding	1.88E-04
16	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	1.88E-04
17	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.88E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.88E-04
19	GO:0004061: arylformamidase activity	4.24E-04
20	GO:0015036: disulfide oxidoreductase activity	4.24E-04
21	GO:0004450: isocitrate dehydrogenase (NADP+) activity	4.24E-04
22	GO:0005524: ATP binding	5.81E-04
23	GO:0017025: TBP-class protein binding	6.12E-04
24	GO:0019003: GDP binding	6.92E-04
25	GO:0050833: pyruvate transmembrane transporter activity	6.92E-04
26	GO:0015193: L-proline transmembrane transporter activity	6.92E-04
27	GO:0016805: dipeptidase activity	6.92E-04
28	GO:0008430: selenium binding	6.92E-04
29	GO:0004324: ferredoxin-NADP+ reductase activity	6.92E-04
30	GO:0004416: hydroxyacylglutathione hydrolase activity	9.86E-04
31	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	9.86E-04
32	GO:0004749: ribose phosphate diphosphokinase activity	9.86E-04
33	GO:0008276: protein methyltransferase activity	9.86E-04
34	GO:0010328: auxin influx transmembrane transporter activity	1.31E-03
35	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.31E-03
36	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.66E-03
37	GO:0005471: ATP:ADP antiporter activity	1.66E-03
38	GO:0004356: glutamate-ammonia ligase activity	1.66E-03
39	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.05E-03
40	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.05E-03
41	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.05E-03
42	GO:0004747: ribokinase activity	2.46E-03
43	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.46E-03
44	GO:0004144: diacylglycerol O-acyltransferase activity	2.46E-03
45	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.46E-03
46	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.88E-03
47	GO:0008235: metalloexopeptidase activity	2.90E-03
48	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.90E-03
49	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.90E-03
50	GO:0004683: calmodulin-dependent protein kinase activity	3.04E-03
51	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.36E-03
52	GO:0008865: fructokinase activity	3.36E-03
53	GO:0052747: sinapyl alcohol dehydrogenase activity	3.36E-03
54	GO:0008194: UDP-glycosyltransferase activity	3.64E-03
55	GO:0004674: protein serine/threonine kinase activity	4.26E-03
56	GO:0005509: calcium ion binding	4.36E-03
57	GO:0050661: NADP binding	4.84E-03
58	GO:0045309: protein phosphorylated amino acid binding	4.87E-03
59	GO:0047617: acyl-CoA hydrolase activity	4.87E-03
60	GO:0030955: potassium ion binding	4.87E-03
61	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.87E-03
62	GO:0004743: pyruvate kinase activity	4.87E-03
63	GO:0000287: magnesium ion binding	5.37E-03
64	GO:0008171: O-methyltransferase activity	5.42E-03
65	GO:0004129: cytochrome-c oxidase activity	5.99E-03
66	GO:0005543: phospholipid binding	5.99E-03
67	GO:0019904: protein domain specific binding	5.99E-03
68	GO:0004177: aminopeptidase activity	5.99E-03
69	GO:0008559: xenobiotic-transporting ATPase activity	5.99E-03
70	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.58E-03
71	GO:0016301: kinase activity	6.58E-03
72	GO:0051287: NAD binding	6.63E-03
73	GO:0010329: auxin efflux transmembrane transporter activity	7.19E-03
74	GO:0015266: protein channel activity	7.19E-03
75	GO:0005315: inorganic phosphate transmembrane transporter activity	7.19E-03
76	GO:0004175: endopeptidase activity	7.82E-03
77	GO:0031624: ubiquitin conjugating enzyme binding	7.82E-03
78	GO:0051536: iron-sulfur cluster binding	9.83E-03
79	GO:0003954: NADH dehydrogenase activity	9.83E-03
80	GO:0035251: UDP-glucosyltransferase activity	1.13E-02
81	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.13E-02
82	GO:0004176: ATP-dependent peptidase activity	1.13E-02
83	GO:0008408: 3'-5' exonuclease activity	1.13E-02
84	GO:0047134: protein-disulfide reductase activity	1.43E-02
85	GO:0030170: pyridoxal phosphate binding	1.47E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	1.68E-02
87	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.85E-02
88	GO:0004197: cysteine-type endopeptidase activity	1.94E-02
89	GO:0016887: ATPase activity	2.07E-02
90	GO:0016597: amino acid binding	2.31E-02
91	GO:0051213: dioxygenase activity	2.41E-02
92	GO:0016491: oxidoreductase activity	2.67E-02
93	GO:0008236: serine-type peptidase activity	2.81E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	2.88E-02
95	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.91E-02
96	GO:0004222: metalloendopeptidase activity	3.12E-02
97	GO:0030145: manganese ion binding	3.23E-02
98	GO:0008233: peptidase activity	3.44E-02
99	GO:0003746: translation elongation factor activity	3.45E-02
100	GO:0020037: heme binding	3.48E-02
101	GO:0003993: acid phosphatase activity	3.56E-02
102	GO:0004364: glutathione transferase activity	4.01E-02
103	GO:0005516: calmodulin binding	4.06E-02
104	GO:0005484: SNAP receptor activity	4.13E-02
105	GO:0005198: structural molecule activity	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0045335: phagocytic vesicle	0.00E+00
2	GO:0019822: P4 peroxisome	0.00E+00
3	GO:0005829: cytosol	1.27E-08
4	GO:0005886: plasma membrane	1.39E-06
5	GO:0005783: endoplasmic reticulum	2.00E-06
6	GO:0005777: peroxisome	1.16E-05
7	GO:0031597: cytosolic proteasome complex	8.84E-05
8	GO:0031595: nuclear proteasome complex	1.18E-04
9	GO:0031305: integral component of mitochondrial inner membrane	1.51E-04
10	GO:0032783: ELL-EAF complex	1.88E-04
11	GO:0008540: proteasome regulatory particle, base subcomplex	2.73E-04
12	GO:0017119: Golgi transport complex	3.21E-04
13	GO:0031304: intrinsic component of mitochondrial inner membrane	4.24E-04
14	GO:0031314: extrinsic component of mitochondrial inner membrane	4.24E-04
15	GO:0005901: caveola	4.24E-04
16	GO:0005782: peroxisomal matrix	6.92E-04
17	GO:0030658: transport vesicle membrane	9.86E-04
18	GO:0070062: extracellular exosome	9.86E-04
19	GO:0000502: proteasome complex	1.02E-03
20	GO:0005746: mitochondrial respiratory chain	1.66E-03
21	GO:0005773: vacuole	1.84E-03
22	GO:0005778: peroxisomal membrane	2.30E-03
23	GO:0045273: respiratory chain complex II	3.36E-03
24	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.36E-03
25	GO:0005794: Golgi apparatus	3.46E-03
26	GO:0030665: clathrin-coated vesicle membrane	4.87E-03
27	GO:0031902: late endosome membrane	5.05E-03
28	GO:0005740: mitochondrial envelope	5.42E-03
29	GO:0008541: proteasome regulatory particle, lid subcomplex	5.99E-03
30	GO:0090404: pollen tube tip	5.99E-03
31	GO:0005764: lysosome	7.82E-03
32	GO:0030176: integral component of endoplasmic reticulum membrane	8.47E-03
33	GO:0005789: endoplasmic reticulum membrane	1.05E-02
34	GO:0005743: mitochondrial inner membrane	1.08E-02
35	GO:0005741: mitochondrial outer membrane	1.13E-02
36	GO:0016020: membrane	1.21E-02
37	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.35E-02
38	GO:0005774: vacuolar membrane	1.55E-02
39	GO:0005770: late endosome	1.60E-02
40	GO:0005759: mitochondrial matrix	1.66E-02
41	GO:0009504: cell plate	1.77E-02
42	GO:0000145: exocyst	1.94E-02
43	GO:0032580: Golgi cisterna membrane	2.13E-02
44	GO:0000151: ubiquitin ligase complex	2.91E-02
45	GO:0016021: integral component of membrane	3.05E-02
46	GO:0005802: trans-Golgi network	4.39E-02
47	GO:0005737: cytoplasm	4.67E-02