co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070584: mitochondrion morphogenesis	0.00E+00
2	GO:0071311: cellular response to acetate	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:0071260: cellular response to mechanical stimulus	0.00E+00
5	GO:0009877: nodulation	0.00E+00
6	GO:0042906: xanthine transport	0.00E+00
7	GO:0090279: regulation of calcium ion import	0.00E+00
8	GO:0046677: response to antibiotic	0.00E+00
9	GO:0010378: temperature compensation of the circadian clock	0.00E+00
10	GO:0030644: cellular chloride ion homeostasis	0.00E+00
11	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
12	GO:0071474: cellular hyperosmotic response	0.00E+00
13	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
14	GO:0009768: photosynthesis, light harvesting in photosystem I	9.03E-22
15	GO:0018298: protein-chromophore linkage	2.25E-15
16	GO:0015979: photosynthesis	2.57E-14
17	GO:0009645: response to low light intensity stimulus	3.44E-10
18	GO:0010114: response to red light	2.21E-09
19	GO:0010218: response to far red light	1.44E-08
20	GO:0009637: response to blue light	2.43E-08
21	GO:0009769: photosynthesis, light harvesting in photosystem II	5.88E-08
22	GO:0009644: response to high light intensity	8.33E-08
23	GO:0007623: circadian rhythm	3.01E-07
24	GO:0009409: response to cold	6.24E-07
25	GO:0009416: response to light stimulus	1.99E-06
26	GO:0009765: photosynthesis, light harvesting	6.61E-05
27	GO:0010600: regulation of auxin biosynthetic process	6.61E-05
28	GO:0015995: chlorophyll biosynthetic process	9.49E-05
29	GO:0071470: cellular response to osmotic stress	2.05E-04
30	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.05E-04
31	GO:0080167: response to karrikin	2.21E-04
32	GO:0042542: response to hydrogen peroxide	2.50E-04
33	GO:0010196: nonphotochemical quenching	2.67E-04
34	GO:0034472: snRNA 3'-end processing	3.22E-04
35	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	3.22E-04
36	GO:0010496: intercellular transport	3.22E-04
37	GO:0010362: negative regulation of anion channel activity by blue light	3.22E-04
38	GO:0015812: gamma-aminobutyric acid transport	3.22E-04
39	GO:0032958: inositol phosphate biosynthetic process	3.22E-04
40	GO:0010928: regulation of auxin mediated signaling pathway	3.36E-04
41	GO:0015720: allantoin transport	7.02E-04
42	GO:0010155: regulation of proton transport	7.02E-04
43	GO:0051262: protein tetramerization	7.02E-04
44	GO:0006883: cellular sodium ion homeostasis	7.02E-04
45	GO:0090057: root radial pattern formation	7.02E-04
46	GO:0015857: uracil transport	7.02E-04
47	GO:1902884: positive regulation of response to oxidative stress	7.02E-04
48	GO:0051170: nuclear import	7.02E-04
49	GO:0050992: dimethylallyl diphosphate biosynthetic process	7.02E-04
50	GO:0000160: phosphorelay signal transduction system	1.06E-03
51	GO:1902448: positive regulation of shade avoidance	1.14E-03
52	GO:0071230: cellular response to amino acid stimulus	1.14E-03
53	GO:0006598: polyamine catabolic process	1.14E-03
54	GO:1901562: response to paraquat	1.14E-03
55	GO:0071705: nitrogen compound transport	1.14E-03
56	GO:0090153: regulation of sphingolipid biosynthetic process	1.14E-03
57	GO:0010119: regulation of stomatal movement	1.19E-03
58	GO:0006355: regulation of transcription, DNA-templated	1.40E-03
59	GO:0006020: inositol metabolic process	1.63E-03
60	GO:1901000: regulation of response to salt stress	1.63E-03
61	GO:0010601: positive regulation of auxin biosynthetic process	1.63E-03
62	GO:0044211: CTP salvage	1.63E-03
63	GO:0030100: regulation of endocytosis	1.63E-03
64	GO:0031936: negative regulation of chromatin silencing	1.63E-03
65	GO:0006874: cellular calcium ion homeostasis	1.74E-03
66	GO:0035556: intracellular signal transduction	1.76E-03
67	GO:0048511: rhythmic process	1.91E-03
68	GO:0009269: response to desiccation	1.91E-03
69	GO:0003333: amino acid transmembrane transport	1.91E-03
70	GO:0008643: carbohydrate transport	2.03E-03
71	GO:0010017: red or far-red light signaling pathway	2.09E-03
72	GO:0006351: transcription, DNA-templated	2.12E-03
73	GO:2000306: positive regulation of photomorphogenesis	2.19E-03
74	GO:1901002: positive regulation of response to salt stress	2.19E-03
75	GO:0015846: polyamine transport	2.19E-03
76	GO:0030104: water homeostasis	2.19E-03
77	GO:0044206: UMP salvage	2.19E-03
78	GO:0070417: cellular response to cold	2.68E-03
79	GO:0009585: red, far-red light phototransduction	2.69E-03
80	GO:0006461: protein complex assembly	2.80E-03
81	GO:0016123: xanthophyll biosynthetic process	2.80E-03
82	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.80E-03
83	GO:0043097: pyrimidine nucleoside salvage	2.80E-03
84	GO:0009904: chloroplast accumulation movement	2.80E-03
85	GO:0009658: chloroplast organization	3.32E-03
86	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.46E-03
87	GO:0045962: positive regulation of development, heterochronic	3.46E-03
88	GO:0006206: pyrimidine nucleobase metabolic process	3.46E-03
89	GO:0009635: response to herbicide	3.46E-03
90	GO:0006970: response to osmotic stress	3.72E-03
91	GO:0009737: response to abscisic acid	3.77E-03
92	GO:0055114: oxidation-reduction process	4.06E-03
93	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.17E-03
94	GO:0009903: chloroplast avoidance movement	4.17E-03
95	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.17E-03
96	GO:1901657: glycosyl compound metabolic process	4.38E-03
97	GO:0010161: red light signaling pathway	4.92E-03
98	GO:1900056: negative regulation of leaf senescence	4.92E-03
99	GO:0048437: floral organ development	4.92E-03
100	GO:0080111: DNA demethylation	4.92E-03
101	GO:0010038: response to metal ion	4.92E-03
102	GO:0016126: sterol biosynthetic process	5.57E-03
103	GO:0009415: response to water	5.71E-03
104	GO:0042255: ribosome assembly	5.71E-03
105	GO:0010078: maintenance of root meristem identity	5.71E-03
106	GO:0009704: de-etiolation	5.71E-03
107	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	5.89E-03
108	GO:0010029: regulation of seed germination	5.89E-03
109	GO:0009414: response to water deprivation	6.07E-03
110	GO:0010099: regulation of photomorphogenesis	6.55E-03
111	GO:0009827: plant-type cell wall modification	6.55E-03
112	GO:0007186: G-protein coupled receptor signaling pathway	6.55E-03
113	GO:0009817: defense response to fungus, incompatible interaction	7.27E-03
114	GO:0090333: regulation of stomatal closure	7.42E-03
115	GO:0009638: phototropism	8.34E-03
116	GO:0030042: actin filament depolymerization	8.34E-03
117	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.34E-03
118	GO:0010380: regulation of chlorophyll biosynthetic process	8.34E-03
119	GO:0008356: asymmetric cell division	8.34E-03
120	GO:0009631: cold acclimation	8.41E-03
121	GO:0016051: carbohydrate biosynthetic process	9.22E-03
122	GO:0009641: shade avoidance	9.30E-03
123	GO:0006949: syncytium formation	9.30E-03
124	GO:0010162: seed dormancy process	9.30E-03
125	GO:0009970: cellular response to sulfate starvation	9.30E-03
126	GO:0055062: phosphate ion homeostasis	9.30E-03
127	GO:0006995: cellular response to nitrogen starvation	9.30E-03
128	GO:0009688: abscisic acid biosynthetic process	9.30E-03
129	GO:0046856: phosphatidylinositol dephosphorylation	1.03E-02
130	GO:0006816: calcium ion transport	1.03E-02
131	GO:0018119: peptidyl-cysteine S-nitrosylation	1.03E-02
132	GO:0030148: sphingolipid biosynthetic process	1.03E-02
133	GO:0016925: protein sumoylation	1.13E-02
134	GO:0009640: photomorphogenesis	1.19E-02
135	GO:0050826: response to freezing	1.24E-02
136	GO:0018107: peptidyl-threonine phosphorylation	1.24E-02
137	GO:0009718: anthocyanin-containing compound biosynthetic process	1.24E-02
138	GO:0009767: photosynthetic electron transport chain	1.24E-02
139	GO:0009785: blue light signaling pathway	1.24E-02
140	GO:0009887: animal organ morphogenesis	1.35E-02
141	GO:0009266: response to temperature stimulus	1.35E-02
142	GO:0010207: photosystem II assembly	1.35E-02
143	GO:0007015: actin filament organization	1.35E-02
144	GO:0019853: L-ascorbic acid biosynthetic process	1.46E-02
145	GO:0090351: seedling development	1.46E-02
146	GO:0042538: hyperosmotic salinity response	1.50E-02
147	GO:0006812: cation transport	1.50E-02
148	GO:0009735: response to cytokinin	1.73E-02
149	GO:0009723: response to ethylene	1.78E-02
150	GO:0016575: histone deacetylation	1.83E-02
151	GO:0010431: seed maturation	1.95E-02
152	GO:0019748: secondary metabolic process	2.08E-02
153	GO:0044550: secondary metabolite biosynthetic process	2.15E-02
154	GO:0006012: galactose metabolic process	2.22E-02
155	GO:0009693: ethylene biosynthetic process	2.22E-02
156	GO:0071215: cellular response to abscisic acid stimulus	2.22E-02
157	GO:0009686: gibberellin biosynthetic process	2.22E-02
158	GO:0045492: xylan biosynthetic process	2.35E-02
159	GO:0019722: calcium-mediated signaling	2.35E-02
160	GO:0045892: negative regulation of transcription, DNA-templated	2.48E-02
161	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.49E-02
162	GO:0007165: signal transduction	2.60E-02
163	GO:0034220: ion transmembrane transport	2.63E-02
164	GO:0009651: response to salt stress	2.67E-02
165	GO:0010182: sugar mediated signaling pathway	2.78E-02
166	GO:0042752: regulation of circadian rhythm	2.92E-02
167	GO:0032259: methylation	2.99E-02
168	GO:0009556: microsporogenesis	3.07E-02
169	GO:0006629: lipid metabolic process	3.16E-02
170	GO:0009408: response to heat	3.16E-02
171	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.23E-02
172	GO:0000302: response to reactive oxygen species	3.23E-02
173	GO:0032502: developmental process	3.38E-02
174	GO:0006810: transport	3.68E-02
175	GO:0019760: glucosinolate metabolic process	3.70E-02
176	GO:0009828: plant-type cell wall loosening	3.70E-02
177	GO:0010286: heat acclimation	3.86E-02
178	GO:0010228: vegetative to reproductive phase transition of meristem	4.14E-02
179	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.43E-02
180	GO:0009739: response to gibberellin	4.43E-02
181	GO:0006888: ER to Golgi vesicle-mediated transport	4.71E-02
182	GO:0048573: photoperiodism, flowering	4.71E-02
183	GO:0010468: regulation of gene expression	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
3	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
4	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
5	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0080082: esculin beta-glucosidase activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
10	GO:0015276: ligand-gated ion channel activity	0.00E+00
11	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
12	GO:0009899: ent-kaurene synthase activity	0.00E+00
13	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
14	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
15	GO:0031409: pigment binding	3.67E-20
16	GO:0016168: chlorophyll binding	6.12E-16
17	GO:0046872: metal ion binding	2.70E-04
18	GO:0000829: inositol heptakisphosphate kinase activity	3.22E-04
19	GO:0005227: calcium activated cation channel activity	3.22E-04
20	GO:0080079: cellobiose glucosidase activity	3.22E-04
21	GO:0008066: glutamate receptor activity	3.22E-04
22	GO:0052631: sphingolipid delta-8 desaturase activity	3.22E-04
23	GO:0000828: inositol hexakisphosphate kinase activity	3.22E-04
24	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.22E-04
25	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	3.22E-04
26	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	3.22E-04
27	GO:0008158: hedgehog receptor activity	3.22E-04
28	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.22E-04
29	GO:0005515: protein binding	3.31E-04
30	GO:0005274: allantoin uptake transmembrane transporter activity	7.02E-04
31	GO:0047216: inositol 3-alpha-galactosyltransferase activity	7.02E-04
32	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.02E-04
33	GO:0016630: protochlorophyllide reductase activity	7.02E-04
34	GO:0015180: L-alanine transmembrane transporter activity	7.02E-04
35	GO:0080045: quercetin 3'-O-glucosyltransferase activity	7.02E-04
36	GO:0046592: polyamine oxidase activity	1.14E-03
37	GO:0019948: SUMO activating enzyme activity	1.14E-03
38	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.14E-03
39	GO:0017150: tRNA dihydrouridine synthase activity	1.14E-03
40	GO:0004096: catalase activity	1.14E-03
41	GO:0004970: ionotropic glutamate receptor activity	1.28E-03
42	GO:0005217: intracellular ligand-gated ion channel activity	1.28E-03
43	GO:0015297: antiporter activity	1.59E-03
44	GO:0015189: L-lysine transmembrane transporter activity	1.63E-03
45	GO:0000254: C-4 methylsterol oxidase activity	1.63E-03
46	GO:0015181: arginine transmembrane transporter activity	1.63E-03
47	GO:0015203: polyamine transmembrane transporter activity	1.63E-03
48	GO:0009882: blue light photoreceptor activity	1.63E-03
49	GO:0004707: MAP kinase activity	1.91E-03
50	GO:0004845: uracil phosphoribosyltransferase activity	2.19E-03
51	GO:0015210: uracil transmembrane transporter activity	2.19E-03
52	GO:0005313: L-glutamate transmembrane transporter activity	2.19E-03
53	GO:0004506: squalene monooxygenase activity	2.19E-03
54	GO:0005253: anion channel activity	2.19E-03
55	GO:0004930: G-protein coupled receptor activity	2.19E-03
56	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.80E-03
57	GO:0051538: 3 iron, 4 sulfur cluster binding	2.80E-03
58	GO:0015171: amino acid transmembrane transporter activity	3.06E-03
59	GO:0005247: voltage-gated chloride channel activity	3.46E-03
60	GO:0080046: quercetin 4'-O-glucosyltransferase activity	3.46E-03
61	GO:0004629: phospholipase C activity	3.46E-03
62	GO:0015562: efflux transmembrane transporter activity	3.46E-03
63	GO:0003677: DNA binding	3.85E-03
64	GO:0004849: uridine kinase activity	4.17E-03
65	GO:0004602: glutathione peroxidase activity	4.17E-03
66	GO:0005261: cation channel activity	4.17E-03
67	GO:0004435: phosphatidylinositol phospholipase C activity	4.17E-03
68	GO:0000156: phosphorelay response regulator activity	4.38E-03
69	GO:0004564: beta-fructofuranosidase activity	5.71E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	5.71E-03
71	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.80E-03
72	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.40E-03
73	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.55E-03
74	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	6.55E-03
75	GO:0102483: scopolin beta-glucosidase activity	6.56E-03
76	GO:0071949: FAD binding	7.42E-03
77	GO:0000989: transcription factor activity, transcription factor binding	7.42E-03
78	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.42E-03
79	GO:0005215: transporter activity	7.75E-03
80	GO:0004575: sucrose alpha-glucosidase activity	8.34E-03
81	GO:0015174: basic amino acid transmembrane transporter activity	8.34E-03
82	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	9.30E-03
83	GO:0008422: beta-glucosidase activity	1.01E-02
84	GO:0047372: acylglycerol lipase activity	1.03E-02
85	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.13E-02
86	GO:0000155: phosphorelay sensor kinase activity	1.24E-02
87	GO:0005262: calcium channel activity	1.24E-02
88	GO:0004565: beta-galactosidase activity	1.24E-02
89	GO:0004022: alcohol dehydrogenase (NAD) activity	1.24E-02
90	GO:0051537: 2 iron, 2 sulfur cluster binding	1.29E-02
91	GO:0008131: primary amine oxidase activity	1.35E-02
92	GO:0008168: methyltransferase activity	1.41E-02
93	GO:0004190: aspartic-type endopeptidase activity	1.46E-02
94	GO:0003712: transcription cofactor activity	1.46E-02
95	GO:0004407: histone deacetylase activity	1.70E-02
96	GO:0005216: ion channel activity	1.83E-02
97	GO:0008324: cation transmembrane transporter activity	1.83E-02
98	GO:0005506: iron ion binding	1.89E-02
99	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.95E-02
100	GO:0016874: ligase activity	2.16E-02
101	GO:0003727: single-stranded RNA binding	2.35E-02
102	GO:0010181: FMN binding	2.92E-02
103	GO:0004672: protein kinase activity	3.68E-02
104	GO:0008375: acetylglucosaminyltransferase activity	4.53E-02
105	GO:0008270: zinc ion binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	1.64E-17
3	GO:0030076: light-harvesting complex	5.52E-16
4	GO:0010287: plastoglobule	5.24E-15
5	GO:0009941: chloroplast envelope	2.25E-13
6	GO:0009535: chloroplast thylakoid membrane	8.96E-13
7	GO:0009534: chloroplast thylakoid	2.90E-12
8	GO:0009579: thylakoid	3.61E-11
9	GO:0009523: photosystem II	3.05E-08
10	GO:0016021: integral component of membrane	2.25E-07
11	GO:0009517: PSII associated light-harvesting complex II	5.13E-07
12	GO:0042651: thylakoid membrane	6.18E-06
13	GO:0016020: membrane	4.22E-05
14	GO:0009898: cytoplasmic side of plasma membrane	6.61E-05
15	GO:0009507: chloroplast	8.21E-05
16	GO:0009538: photosystem I reaction center	3.36E-04
17	GO:0032586: protein storage vacuole membrane	2.19E-03
18	GO:0030660: Golgi-associated vesicle membrane	2.19E-03
19	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	2.19E-03
20	GO:0030127: COPII vesicle coat	3.46E-03
21	GO:0034707: chloride channel complex	3.46E-03
22	GO:0005798: Golgi-associated vesicle	3.46E-03
23	GO:0009533: chloroplast stromal thylakoid	4.92E-03
24	GO:0009986: cell surface	4.92E-03
25	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.71E-03
26	GO:0000326: protein storage vacuole	6.55E-03
27	GO:0010494: cytoplasmic stress granule	7.42E-03
28	GO:0005765: lysosomal membrane	1.03E-02
29	GO:0005938: cell cortex	1.24E-02
30	GO:0030095: chloroplast photosystem II	1.35E-02
31	GO:0031966: mitochondrial membrane	1.50E-02
32	GO:0005622: intracellular	1.55E-02
33	GO:0005769: early endosome	1.58E-02
34	GO:0009654: photosystem II oxygen evolving complex	1.83E-02
35	GO:0015629: actin cytoskeleton	2.22E-02
36	GO:0009570: chloroplast stroma	2.25E-02
37	GO:0009706: chloroplast inner membrane	2.30E-02
38	GO:0019898: extrinsic component of membrane	3.07E-02
39	GO:0000932: P-body	4.19E-02