co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009946: proximal/distal axis specification	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0009715: chalcone biosynthetic process	0.00E+00
4	GO:0010336: gibberellic acid homeostasis	0.00E+00
5	GO:0019253: reductive pentose-phosphate cycle	2.08E-05
6	GO:0019464: glycine decarboxylation via glycine cleavage system	2.45E-05
7	GO:0006546: glycine catabolic process	2.45E-05
8	GO:0071370: cellular response to gibberellin stimulus	1.80E-04
9	GO:0003002: regionalization	1.80E-04
10	GO:0006659: phosphatidylserine biosynthetic process	1.80E-04
11	GO:0000066: mitochondrial ornithine transport	1.80E-04
12	GO:0019510: S-adenosylhomocysteine catabolic process	1.80E-04
13	GO:0010597: green leaf volatile biosynthetic process	1.80E-04
14	GO:1901349: glucosinolate transport	1.80E-04
15	GO:0090449: phloem glucosinolate loading	1.80E-04
16	GO:0009611: response to wounding	3.00E-04
17	GO:0010218: response to far red light	3.92E-04
18	GO:0080183: response to photooxidative stress	4.05E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.05E-04
20	GO:2000123: positive regulation of stomatal complex development	4.05E-04
21	GO:0009629: response to gravity	4.05E-04
22	GO:0015712: hexose phosphate transport	4.05E-04
23	GO:0019388: galactose catabolic process	4.05E-04
24	GO:0033353: S-adenosylmethionine cycle	4.05E-04
25	GO:0009767: photosynthetic electron transport chain	4.55E-04
26	GO:0035436: triose phosphate transmembrane transport	6.61E-04
27	GO:0010338: leaf formation	6.61E-04
28	GO:2000082: regulation of L-ascorbic acid biosynthetic process	6.61E-04
29	GO:0006000: fructose metabolic process	6.61E-04
30	GO:0017157: regulation of exocytosis	6.61E-04
31	GO:0009695: jasmonic acid biosynthetic process	7.77E-04
32	GO:0031408: oxylipin biosynthetic process	8.51E-04
33	GO:0009590: detection of gravity	9.45E-04
34	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.45E-04
35	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.45E-04
36	GO:0016556: mRNA modification	9.45E-04
37	GO:0006021: inositol biosynthetic process	1.25E-03
38	GO:0009902: chloroplast relocation	1.25E-03
39	GO:0009694: jasmonic acid metabolic process	1.25E-03
40	GO:0006542: glutamine biosynthetic process	1.25E-03
41	GO:0019676: ammonia assimilation cycle	1.25E-03
42	GO:0009765: photosynthesis, light harvesting	1.25E-03
43	GO:0045088: regulation of innate immune response	1.25E-03
44	GO:0015713: phosphoglycerate transport	1.25E-03
45	GO:0006749: glutathione metabolic process	1.25E-03
46	GO:0034440: lipid oxidation	1.25E-03
47	GO:2000038: regulation of stomatal complex development	1.25E-03
48	GO:0080167: response to karrikin	1.28E-03
49	GO:0019252: starch biosynthetic process	1.57E-03
50	GO:0010236: plastoquinone biosynthetic process	1.59E-03
51	GO:0016123: xanthophyll biosynthetic process	1.59E-03
52	GO:0010375: stomatal complex patterning	1.59E-03
53	GO:0007264: small GTPase mediated signal transduction	1.79E-03
54	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.96E-03
55	GO:0006559: L-phenylalanine catabolic process	1.96E-03
56	GO:0017148: negative regulation of translation	2.35E-03
57	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.35E-03
58	GO:0009094: L-phenylalanine biosynthetic process	2.35E-03
59	GO:0006810: transport	2.55E-03
60	GO:0009753: response to jasmonic acid	2.56E-03
61	GO:0008152: metabolic process	2.67E-03
62	GO:0080027: response to herbivore	2.77E-03
63	GO:0046686: response to cadmium ion	2.86E-03
64	GO:0018298: protein-chromophore linkage	3.15E-03
65	GO:0031540: regulation of anthocyanin biosynthetic process	3.21E-03
66	GO:0007155: cell adhesion	3.21E-03
67	GO:0048564: photosystem I assembly	3.21E-03
68	GO:0008610: lipid biosynthetic process	3.21E-03
69	GO:0005978: glycogen biosynthetic process	3.21E-03
70	GO:0010439: regulation of glucosinolate biosynthetic process	3.21E-03
71	GO:0006002: fructose 6-phosphate metabolic process	3.67E-03
72	GO:0022900: electron transport chain	3.67E-03
73	GO:0048193: Golgi vesicle transport	3.67E-03
74	GO:0048589: developmental growth	4.15E-03
75	GO:0008356: asymmetric cell division	4.65E-03
76	GO:0010018: far-red light signaling pathway	4.65E-03
77	GO:1900865: chloroplast RNA modification	4.65E-03
78	GO:0031425: chloroplast RNA processing	4.65E-03
79	GO:0010114: response to red light	5.12E-03
80	GO:0010192: mucilage biosynthetic process	5.18E-03
81	GO:0051555: flavonol biosynthetic process	5.18E-03
82	GO:0000272: polysaccharide catabolic process	5.72E-03
83	GO:0048229: gametophyte development	5.72E-03
84	GO:0019684: photosynthesis, light reaction	5.72E-03
85	GO:0006006: glucose metabolic process	6.86E-03
86	GO:0006094: gluconeogenesis	6.86E-03
87	GO:0005986: sucrose biosynthetic process	6.86E-03
88	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.92E-03
89	GO:0006857: oligopeptide transport	7.39E-03
90	GO:0009887: animal organ morphogenesis	7.46E-03
91	GO:0005985: sucrose metabolic process	8.08E-03
92	GO:0009833: plant-type primary cell wall biogenesis	8.71E-03
93	GO:0005975: carbohydrate metabolic process	9.22E-03
94	GO:0009944: polarity specification of adaxial/abaxial axis	9.37E-03
95	GO:0007010: cytoskeleton organization	9.37E-03
96	GO:0009768: photosynthesis, light harvesting in photosystem I	1.00E-02
97	GO:0006366: transcription from RNA polymerase II promoter	1.07E-02
98	GO:0080092: regulation of pollen tube growth	1.14E-02
99	GO:0006730: one-carbon metabolic process	1.14E-02
100	GO:0009625: response to insect	1.22E-02
101	GO:0006284: base-excision repair	1.29E-02
102	GO:0016117: carotenoid biosynthetic process	1.37E-02
103	GO:0015991: ATP hydrolysis coupled proton transport	1.44E-02
104	GO:0042335: cuticle development	1.44E-02
105	GO:0006520: cellular amino acid metabolic process	1.52E-02
106	GO:0006633: fatty acid biosynthetic process	1.55E-02
107	GO:0015986: ATP synthesis coupled proton transport	1.60E-02
108	GO:0007059: chromosome segregation	1.60E-02
109	GO:0008654: phospholipid biosynthetic process	1.68E-02
110	GO:0009791: post-embryonic development	1.68E-02
111	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.77E-02
112	GO:0071554: cell wall organization or biogenesis	1.77E-02
113	GO:0048235: pollen sperm cell differentiation	1.85E-02
114	GO:0010583: response to cyclopentenone	1.85E-02
115	GO:0019761: glucosinolate biosynthetic process	1.85E-02
116	GO:1901657: glycosyl compound metabolic process	1.94E-02
117	GO:0009735: response to cytokinin	2.01E-02
118	GO:0016125: sterol metabolic process	2.03E-02
119	GO:0009617: response to bacterium	2.04E-02
120	GO:0007267: cell-cell signaling	2.11E-02
121	GO:0010286: heat acclimation	2.11E-02
122	GO:0051607: defense response to virus	2.20E-02
123	GO:0009416: response to light stimulus	2.25E-02
124	GO:0009615: response to virus	2.30E-02
125	GO:0042128: nitrate assimilation	2.48E-02
126	GO:0048573: photoperiodism, flowering	2.58E-02
127	GO:0030244: cellulose biosynthetic process	2.77E-02
128	GO:0009817: defense response to fungus, incompatible interaction	2.77E-02
129	GO:0009832: plant-type cell wall biogenesis	2.87E-02
130	GO:0048767: root hair elongation	2.87E-02
131	GO:0009813: flavonoid biosynthetic process	2.87E-02
132	GO:0009407: toxin catabolic process	2.97E-02
133	GO:0007568: aging	3.08E-02
134	GO:0010119: regulation of stomatal movement	3.08E-02
135	GO:0016051: carbohydrate biosynthetic process	3.28E-02
136	GO:0009637: response to blue light	3.28E-02
137	GO:0009853: photorespiration	3.28E-02
138	GO:0009867: jasmonic acid mediated signaling pathway	3.28E-02
139	GO:0034599: cellular response to oxidative stress	3.39E-02
140	GO:0006839: mitochondrial transport	3.60E-02
141	GO:0006631: fatty acid metabolic process	3.71E-02
142	GO:0009926: auxin polar transport	3.93E-02
143	GO:0009744: response to sucrose	3.93E-02
144	GO:0051707: response to other organism	3.93E-02
145	GO:0008283: cell proliferation	3.93E-02
146	GO:0009636: response to toxic substance	4.27E-02
147	GO:0009965: leaf morphogenesis	4.27E-02
148	GO:0006869: lipid transport	4.29E-02
149	GO:0042538: hyperosmotic salinity response	4.62E-02
150	GO:0009751: response to salicylic acid	4.74E-02
151	GO:0006281: DNA repair	4.81E-02
152	GO:0010224: response to UV-B	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
2	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
3	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
4	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
5	GO:1990055: phenylacetaldehyde synthase activity	0.00E+00
6	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
7	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
8	GO:0008962: phosphatidylglycerophosphatase activity	0.00E+00
9	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.33E-05
10	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.20E-05
11	GO:0090448: glucosinolate:proton symporter activity	1.80E-04
12	GO:0004837: tyrosine decarboxylase activity	1.80E-04
13	GO:0004013: adenosylhomocysteinase activity	1.80E-04
14	GO:0010313: phytochrome binding	1.80E-04
15	GO:0010291: carotene beta-ring hydroxylase activity	4.05E-04
16	GO:0016868: intramolecular transferase activity, phosphotransferases	4.05E-04
17	GO:0004618: phosphoglycerate kinase activity	4.05E-04
18	GO:0004047: aminomethyltransferase activity	4.05E-04
19	GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity	4.05E-04
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.05E-04
21	GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity	4.05E-04
22	GO:0000064: L-ornithine transmembrane transporter activity	4.05E-04
23	GO:0004512: inositol-3-phosphate synthase activity	4.05E-04
24	GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity	4.05E-04
25	GO:0004614: phosphoglucomutase activity	4.05E-04
26	GO:0004751: ribose-5-phosphate isomerase activity	6.61E-04
27	GO:0030267: glyoxylate reductase (NADP) activity	6.61E-04
28	GO:0016165: linoleate 13S-lipoxygenase activity	6.61E-04
29	GO:0071917: triose-phosphate transmembrane transporter activity	6.61E-04
30	GO:0003913: DNA photolyase activity	6.61E-04
31	GO:0004148: dihydrolipoyl dehydrogenase activity	6.61E-04
32	GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity	6.61E-04
33	GO:0048027: mRNA 5'-UTR binding	9.45E-04
34	GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity	9.45E-04
35	GO:0015120: phosphoglycerate transmembrane transporter activity	1.25E-03
36	GO:0047769: arogenate dehydratase activity	1.25E-03
37	GO:0004664: prephenate dehydratase activity	1.25E-03
38	GO:0019905: syntaxin binding	1.25E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.25E-03
40	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.25E-03
41	GO:0019901: protein kinase binding	1.57E-03
42	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.59E-03
43	GO:0004356: glutamate-ammonia ligase activity	1.59E-03
44	GO:0008725: DNA-3-methyladenine glycosylase activity	1.59E-03
45	GO:0008374: O-acyltransferase activity	1.59E-03
46	GO:0017137: Rab GTPase binding	1.59E-03
47	GO:0008200: ion channel inhibitor activity	1.96E-03
48	GO:0080030: methyl indole-3-acetate esterase activity	1.96E-03
49	GO:0102229: amylopectin maltohydrolase activity	1.96E-03
50	GO:0042578: phosphoric ester hydrolase activity	1.96E-03
51	GO:0016597: amino acid binding	2.29E-03
52	GO:0016161: beta-amylase activity	2.35E-03
53	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.35E-03
54	GO:0009881: photoreceptor activity	2.77E-03
55	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.21E-03
56	GO:0005544: calcium-dependent phospholipid binding	3.21E-03
57	GO:0004575: sucrose alpha-glucosidase activity	4.65E-03
58	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.72E-03
59	GO:0008327: methyl-CpG binding	5.72E-03
60	GO:0005089: Rho guanyl-nucleotide exchange factor activity	5.72E-03
61	GO:0051287: NAD binding	6.20E-03
62	GO:0008083: growth factor activity	7.46E-03
63	GO:0031409: pigment binding	8.71E-03
64	GO:0001046: core promoter sequence-specific DNA binding	9.37E-03
65	GO:0016760: cellulose synthase (UDP-forming) activity	1.22E-02
66	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.27E-02
67	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.29E-02
68	GO:0005509: calcium ion binding	1.42E-02
69	GO:0005355: glucose transmembrane transporter activity	1.60E-02
70	GO:0015297: antiporter activity	1.63E-02
71	GO:0048038: quinone binding	1.77E-02
72	GO:0004518: nuclease activity	1.85E-02
73	GO:0005215: transporter activity	1.86E-02
74	GO:0008194: UDP-glycosyltransferase activity	1.91E-02
75	GO:0016759: cellulose synthase activity	2.03E-02
76	GO:0005200: structural constituent of cytoskeleton	2.11E-02
77	GO:0008483: transaminase activity	2.11E-02
78	GO:0016413: O-acetyltransferase activity	2.20E-02
79	GO:0016168: chlorophyll binding	2.39E-02
80	GO:0102483: scopolin beta-glucosidase activity	2.58E-02
81	GO:0016788: hydrolase activity, acting on ester bonds	2.69E-02
82	GO:0005096: GTPase activator activity	2.87E-02
83	GO:0016740: transferase activity	2.88E-02
84	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.97E-02
85	GO:0050660: flavin adenine dinucleotide binding	3.06E-02
86	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.08E-02
87	GO:0050897: cobalt ion binding	3.08E-02
88	GO:0004497: monooxygenase activity	3.27E-02
89	GO:0008422: beta-glucosidase activity	3.50E-02
90	GO:0050661: NADP binding	3.60E-02
91	GO:0016757: transferase activity, transferring glycosyl groups	3.63E-02
92	GO:0004364: glutathione transferase activity	3.82E-02
93	GO:0051537: 2 iron, 2 sulfur cluster binding	4.16E-02
94	GO:0005198: structural molecule activity	4.27E-02
95	GO:0016787: hydrolase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0009507: chloroplast	6.82E-08
4	GO:0009941: chloroplast envelope	4.78E-06
5	GO:0005960: glycine cleavage complex	1.33E-05
6	GO:0009570: chloroplast stroma	2.46E-05
7	GO:0009579: thylakoid	7.84E-05
8	GO:0009535: chloroplast thylakoid membrane	1.46E-04
9	GO:0009543: chloroplast thylakoid lumen	2.86E-04
10	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	4.05E-04
11	GO:0030095: chloroplast photosystem II	5.13E-04
12	GO:0009654: photosystem II oxygen evolving complex	7.77E-04
13	GO:0005775: vacuolar lumen	9.45E-04
14	GO:0019898: extrinsic component of membrane	1.57E-03
15	GO:0000793: condensed chromosome	1.96E-03
16	GO:0010319: stromule	2.16E-03
17	GO:0009986: cell surface	2.77E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.15E-03
19	GO:0016324: apical plasma membrane	5.18E-03
20	GO:0005765: lysosomal membrane	5.72E-03
21	GO:0031012: extracellular matrix	6.86E-03
22	GO:0009534: chloroplast thylakoid	7.34E-03
23	GO:0005753: mitochondrial proton-transporting ATP synthase complex	8.08E-03
24	GO:0030076: light-harvesting complex	8.08E-03
25	GO:0031225: anchored component of membrane	1.08E-02
26	GO:0048046: apoplast	1.50E-02
27	GO:0009522: photosystem I	1.60E-02
28	GO:0009523: photosystem II	1.68E-02
29	GO:0009707: chloroplast outer membrane	2.77E-02
30	GO:0005773: vacuole	3.05E-02
31	GO:0005576: extracellular region	3.07E-02
32	GO:0000325: plant-type vacuole	3.08E-02
33	GO:0031969: chloroplast membrane	3.27E-02
34	GO:0005819: spindle	3.50E-02
35	GO:0031902: late endosome membrane	3.71E-02
36	GO:0031977: thylakoid lumen	3.71E-02
37	GO:0005856: cytoskeleton	4.27E-02