co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006848: pyruvate transport	0.00E+00
2	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
3	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
4	GO:0048867: stem cell fate determination	0.00E+00
5	GO:0032012: regulation of ARF protein signal transduction	9.97E-08
6	GO:0010353: response to trehalose	4.61E-05
7	GO:0080119: ER body organization	1.23E-04
8	GO:0034052: positive regulation of plant-type hypersensitive response	2.19E-04
9	GO:0006751: glutathione catabolic process	2.72E-04
10	GO:0009610: response to symbiotic fungus	3.84E-04
11	GO:0006875: cellular metal ion homeostasis	4.43E-04
12	GO:0009932: cell tip growth	5.05E-04
13	GO:0006298: mismatch repair	6.99E-04
14	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.38E-04
15	GO:0005983: starch catabolic process	8.38E-04
16	GO:0010152: pollen maturation	8.38E-04
17	GO:0080188: RNA-directed DNA methylation	1.06E-03
18	GO:0006289: nucleotide-excision repair	1.21E-03
19	GO:0010073: meristem maintenance	1.29E-03
20	GO:0006874: cellular calcium ion homeostasis	1.29E-03
21	GO:0006886: intracellular protein transport	1.97E-03
22	GO:0006814: sodium ion transport	2.00E-03
23	GO:0071805: potassium ion transmembrane transport	2.60E-03
24	GO:0016579: protein deubiquitination	2.70E-03
25	GO:0009816: defense response to bacterium, incompatible interaction	2.91E-03
26	GO:0006888: ER to Golgi vesicle-mediated transport	3.13E-03
27	GO:0008219: cell death	3.36E-03
28	GO:0009631: cold acclimation	3.70E-03
29	GO:0006897: endocytosis	4.43E-03
30	GO:0000209: protein polyubiquitination	4.81E-03
31	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	5.34E-03
32	GO:0009846: pollen germination	5.48E-03
33	GO:0006813: potassium ion transport	5.75E-03
34	GO:0009626: plant-type hypersensitive response	6.74E-03
35	GO:0006396: RNA processing	7.49E-03
36	GO:0009742: brassinosteroid mediated signaling pathway	7.64E-03
37	GO:0000398: mRNA splicing, via spliceosome	8.10E-03
38	GO:0009845: seed germination	9.06E-03
39	GO:0006413: translational initiation	1.02E-02
40	GO:0016036: cellular response to phosphate starvation	1.02E-02
41	GO:0015031: protein transport	1.06E-02
42	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.16E-02
43	GO:0008380: RNA splicing	1.22E-02
44	GO:0009826: unidimensional cell growth	1.42E-02
45	GO:0016192: vesicle-mediated transport	1.77E-02
46	GO:0016310: phosphorylation	2.05E-02
47	GO:0006397: mRNA processing	2.32E-02
48	GO:0055085: transmembrane transport	4.01E-02
49	GO:0006511: ubiquitin-dependent protein catabolic process	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
2	GO:0005086: ARF guanyl-nucleotide exchange factor activity	4.80E-07
3	GO:0050521: alpha-glucan, water dikinase activity	1.77E-05
4	GO:0030276: clathrin binding	6.25E-05
5	GO:0019829: cation-transporting ATPase activity	8.18E-05
6	GO:0050833: pyruvate transmembrane transporter activity	8.18E-05
7	GO:0003729: mRNA binding	2.72E-04
8	GO:0005198: structural molecule activity	3.01E-04
9	GO:0005085: guanyl-nucleotide exchange factor activity	3.84E-04
10	GO:0015386: potassium:proton antiporter activity	7.68E-04
11	GO:0019888: protein phosphatase regulator activity	9.08E-04
12	GO:0005388: calcium-transporting ATPase activity	9.08E-04
13	GO:0015079: potassium ion transmembrane transporter activity	1.29E-03
14	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.37E-03
15	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.19E-03
16	GO:0015385: sodium:proton antiporter activity	2.39E-03
17	GO:0003684: damaged DNA binding	2.49E-03
18	GO:0003697: single-stranded DNA binding	3.94E-03
19	GO:0000166: nucleotide binding	4.11E-03
20	GO:0008026: ATP-dependent helicase activity	7.64E-03
21	GO:0004386: helicase activity	7.79E-03
22	GO:0015297: antiporter activity	1.04E-02
23	GO:0003743: translation initiation factor activity	1.20E-02
24	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.27E-02
25	GO:0008233: peptidase activity	1.68E-02
26	GO:0061630: ubiquitin protein ligase activity	1.77E-02
27	GO:0004722: protein serine/threonine phosphatase activity	2.07E-02
28	GO:0003676: nucleic acid binding	3.43E-02
29	GO:0005524: ATP binding	4.27E-02
30	GO:0005525: GTP binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
2	GO:0071942: XPC complex	0.00E+00
3	GO:0030124: AP-4 adaptor complex	8.18E-05
4	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.12E-04
5	GO:0030126: COPI vesicle coat	2.19E-04
6	GO:0005851: eukaryotic translation initiation factor 2B complex	2.72E-04
7	GO:0005681: spliceosomal complex	4.26E-04
8	GO:0015030: Cajal body	6.32E-04
9	GO:0000159: protein phosphatase type 2A complex	7.68E-04
10	GO:0031307: integral component of mitochondrial outer membrane	8.38E-04
11	GO:0019013: viral nucleocapsid	9.08E-04
12	GO:0005905: clathrin-coated pit	1.37E-03
13	GO:0000139: Golgi membrane	1.68E-03
14	GO:0005829: cytosol	2.31E-03
15	GO:0030529: intracellular ribonucleoprotein complex	2.80E-03
16	GO:0031966: mitochondrial membrane	5.48E-03
17	GO:0031969: chloroplast membrane	1.70E-02
18	GO:0005887: integral component of plasma membrane	2.80E-02
19	GO:0009506: plasmodesma	3.01E-02
20	GO:0005777: peroxisome	3.74E-02
21	GO:0009941: chloroplast envelope	3.92E-02
22	GO:0005634: nucleus	3.97E-02
23	GO:0005802: trans-Golgi network	4.74E-02