co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0042821: pyridoxal biosynthetic process	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	1.44E-12
9	GO:0015979: photosynthesis	2.24E-11
10	GO:0006412: translation	1.30E-10
11	GO:0042254: ribosome biogenesis	9.72E-10
12	GO:0009735: response to cytokinin	2.48E-08
13	GO:0032544: plastid translation	2.37E-07
14	GO:0010207: photosystem II assembly	3.04E-06
15	GO:0009658: chloroplast organization	2.56E-05
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.29E-05
17	GO:2000122: negative regulation of stomatal complex development	7.62E-05
18	GO:0010037: response to carbon dioxide	7.62E-05
19	GO:0015976: carbon utilization	7.62E-05
20	GO:0010027: thylakoid membrane organization	8.78E-05
21	GO:0031365: N-terminal protein amino acid modification	1.19E-04
22	GO:0006636: unsaturated fatty acid biosynthetic process	1.30E-04
23	GO:0010190: cytochrome b6f complex assembly	1.72E-04
24	GO:0006810: transport	2.17E-04
25	GO:0010196: nonphotochemical quenching	3.02E-04
26	GO:0006633: fatty acid biosynthetic process	3.46E-04
27	GO:0009443: pyridoxal 5'-phosphate salvage	3.50E-04
28	GO:0071277: cellular response to calcium ion	3.50E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	3.50E-04
30	GO:0000481: maturation of 5S rRNA	3.50E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	3.50E-04
32	GO:0042371: vitamin K biosynthetic process	3.50E-04
33	GO:0043686: co-translational protein modification	3.50E-04
34	GO:1902458: positive regulation of stomatal opening	3.50E-04
35	GO:0034337: RNA folding	3.50E-04
36	GO:0071588: hydrogen peroxide mediated signaling pathway	3.50E-04
37	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.50E-04
38	GO:0010206: photosystem II repair	5.58E-04
39	GO:0009409: response to cold	5.69E-04
40	GO:0010205: photoinhibition	6.60E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.62E-04
42	GO:0010115: regulation of abscisic acid biosynthetic process	7.62E-04
43	GO:0006729: tetrahydrobiopterin biosynthetic process	7.62E-04
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.62E-04
45	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.62E-04
46	GO:0010024: phytochromobilin biosynthetic process	7.62E-04
47	GO:0018298: protein-chromophore linkage	1.16E-03
48	GO:0006000: fructose metabolic process	1.23E-03
49	GO:0006788: heme oxidation	1.23E-03
50	GO:0006954: inflammatory response	1.23E-03
51	GO:0006518: peptide metabolic process	1.23E-03
52	GO:0071492: cellular response to UV-A	1.23E-03
53	GO:0019253: reductive pentose-phosphate cycle	1.29E-03
54	GO:0007231: osmosensory signaling pathway	1.78E-03
55	GO:0071484: cellular response to light intensity	1.78E-03
56	GO:0061077: chaperone-mediated protein folding	2.16E-03
57	GO:0045727: positive regulation of translation	2.38E-03
58	GO:0015994: chlorophyll metabolic process	2.38E-03
59	GO:0033500: carbohydrate homeostasis	2.38E-03
60	GO:0006546: glycine catabolic process	2.38E-03
61	GO:0071486: cellular response to high light intensity	2.38E-03
62	GO:0019464: glycine decarboxylation via glycine cleavage system	2.38E-03
63	GO:0009306: protein secretion	2.80E-03
64	GO:0016120: carotene biosynthetic process	3.05E-03
65	GO:0032543: mitochondrial translation	3.05E-03
66	GO:0006564: L-serine biosynthetic process	3.05E-03
67	GO:0010236: plastoquinone biosynthetic process	3.05E-03
68	GO:0045038: protein import into chloroplast thylakoid membrane	3.05E-03
69	GO:0006461: protein complex assembly	3.05E-03
70	GO:0055114: oxidation-reduction process	3.50E-03
71	GO:0010182: sugar mediated signaling pathway	3.53E-03
72	GO:0016554: cytidine to uridine editing	3.76E-03
73	GO:0009913: epidermal cell differentiation	3.76E-03
74	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.76E-03
75	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.76E-03
76	GO:0006561: proline biosynthetic process	3.76E-03
77	GO:0010405: arabinogalactan protein metabolic process	3.76E-03
78	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.76E-03
79	GO:0042372: phylloquinone biosynthetic process	4.54E-03
80	GO:1901259: chloroplast rRNA processing	4.54E-03
81	GO:0010189: vitamin E biosynthetic process	4.54E-03
82	GO:0010019: chloroplast-nucleus signaling pathway	4.54E-03
83	GO:0009955: adaxial/abaxial pattern specification	4.54E-03
84	GO:1900057: positive regulation of leaf senescence	5.36E-03
85	GO:0010444: guard mother cell differentiation	5.36E-03
86	GO:0006400: tRNA modification	5.36E-03
87	GO:0009395: phospholipid catabolic process	5.36E-03
88	GO:0009772: photosynthetic electron transport in photosystem II	5.36E-03
89	GO:0008610: lipid biosynthetic process	6.22E-03
90	GO:0030091: protein repair	6.22E-03
91	GO:0042255: ribosome assembly	6.22E-03
92	GO:0046620: regulation of organ growth	6.22E-03
93	GO:0006605: protein targeting	6.22E-03
94	GO:0009704: de-etiolation	6.22E-03
95	GO:0032508: DNA duplex unwinding	6.22E-03
96	GO:2000070: regulation of response to water deprivation	6.22E-03
97	GO:0007186: G-protein coupled receptor signaling pathway	7.14E-03
98	GO:0009657: plastid organization	7.14E-03
99	GO:0017004: cytochrome complex assembly	7.14E-03
100	GO:0006002: fructose 6-phosphate metabolic process	7.14E-03
101	GO:0015996: chlorophyll catabolic process	7.14E-03
102	GO:0045454: cell redox homeostasis	7.32E-03
103	GO:0010411: xyloglucan metabolic process	7.43E-03
104	GO:0090333: regulation of stomatal closure	8.10E-03
105	GO:0009817: defense response to fungus, incompatible interaction	8.23E-03
106	GO:1900865: chloroplast RNA modification	9.10E-03
107	GO:0010119: regulation of stomatal movement	9.53E-03
108	GO:0009688: abscisic acid biosynthetic process	1.01E-02
109	GO:0043069: negative regulation of programmed cell death	1.01E-02
110	GO:0034599: cellular response to oxidative stress	1.09E-02
111	GO:0006816: calcium ion transport	1.12E-02
112	GO:0009073: aromatic amino acid family biosynthetic process	1.12E-02
113	GO:0043085: positive regulation of catalytic activity	1.12E-02
114	GO:0009750: response to fructose	1.12E-02
115	GO:0018119: peptidyl-cysteine S-nitrosylation	1.12E-02
116	GO:0000038: very long-chain fatty acid metabolic process	1.12E-02
117	GO:0006839: mitochondrial transport	1.19E-02
118	GO:0045037: protein import into chloroplast stroma	1.24E-02
119	GO:0006006: glucose metabolic process	1.35E-02
120	GO:0009725: response to hormone	1.35E-02
121	GO:0006094: gluconeogenesis	1.35E-02
122	GO:0005986: sucrose biosynthetic process	1.35E-02
123	GO:0042546: cell wall biogenesis	1.41E-02
124	GO:0009644: response to high light intensity	1.46E-02
125	GO:0010143: cutin biosynthetic process	1.48E-02
126	GO:0005985: sucrose metabolic process	1.60E-02
127	GO:0070588: calcium ion transmembrane transport	1.60E-02
128	GO:0000027: ribosomal large subunit assembly	1.86E-02
129	GO:0006487: protein N-linked glycosylation	1.86E-02
130	GO:0009768: photosynthesis, light harvesting in photosystem I	2.00E-02
131	GO:0031408: oxylipin biosynthetic process	2.13E-02
132	GO:0016998: cell wall macromolecule catabolic process	2.13E-02
133	GO:0006096: glycolytic process	2.16E-02
134	GO:0016226: iron-sulfur cluster assembly	2.28E-02
135	GO:0042742: defense response to bacterium	2.39E-02
136	GO:0019722: calcium-mediated signaling	2.57E-02
137	GO:0042127: regulation of cell proliferation	2.57E-02
138	GO:0042335: cuticle development	2.88E-02
139	GO:0006662: glycerol ether metabolic process	3.04E-02
140	GO:0015986: ATP synthesis coupled proton transport	3.20E-02
141	GO:0009791: post-embryonic development	3.36E-02
142	GO:0055085: transmembrane transport	3.38E-02
143	GO:0032259: methylation	3.49E-02
144	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.53E-02
145	GO:0002229: defense response to oomycetes	3.53E-02
146	GO:0000302: response to reactive oxygen species	3.53E-02
147	GO:0032502: developmental process	3.70E-02
148	GO:0042744: hydrogen peroxide catabolic process	3.71E-02
149	GO:1901657: glycosyl compound metabolic process	3.87E-02
150	GO:0019760: glucosinolate metabolic process	4.04E-02
151	GO:0007267: cell-cell signaling	4.22E-02
152	GO:0042128: nitrate assimilation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:1990534: thermospermine oxidase activity	0.00E+00
10	GO:0019843: rRNA binding	5.16E-16
11	GO:0003735: structural constituent of ribosome	9.23E-12
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.62E-05
13	GO:0016168: chlorophyll binding	9.72E-05
14	GO:0005528: FK506 binding	1.52E-04
15	GO:0051920: peroxiredoxin activity	2.33E-04
16	GO:0022891: substrate-specific transmembrane transporter activity	2.57E-04
17	GO:0080132: fatty acid alpha-hydroxylase activity	3.50E-04
18	GO:0042586: peptide deformylase activity	3.50E-04
19	GO:0045485: omega-6 fatty acid desaturase activity	3.50E-04
20	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.50E-04
21	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.50E-04
22	GO:0004033: aldo-keto reductase (NADP) activity	3.80E-04
23	GO:0016209: antioxidant activity	3.80E-04
24	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.65E-04
25	GO:0018708: thiol S-methyltransferase activity	7.62E-04
26	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.62E-04
27	GO:0008967: phosphoglycolate phosphatase activity	7.62E-04
28	GO:0047746: chlorophyllase activity	7.62E-04
29	GO:0042389: omega-3 fatty acid desaturase activity	7.62E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	7.62E-04
31	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.62E-04
32	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.62E-04
33	GO:0004089: carbonate dehydratase activity	1.14E-03
34	GO:0050734: hydroxycinnamoyltransferase activity	1.23E-03
35	GO:0070402: NADPH binding	1.23E-03
36	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.23E-03
37	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.78E-03
38	GO:0043023: ribosomal large subunit binding	1.78E-03
39	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.78E-03
40	GO:0043495: protein anchor	2.38E-03
41	GO:0004392: heme oxygenase (decyclizing) activity	2.38E-03
42	GO:0004659: prenyltransferase activity	2.38E-03
43	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.38E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.62E-03
45	GO:0004130: cytochrome-c peroxidase activity	3.76E-03
46	GO:0016208: AMP binding	3.76E-03
47	GO:0016688: L-ascorbate peroxidase activity	3.76E-03
48	GO:0008200: ion channel inhibitor activity	3.76E-03
49	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.76E-03
50	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.36E-03
51	GO:0048038: quinone binding	4.36E-03
52	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.54E-03
53	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.54E-03
54	GO:0016491: oxidoreductase activity	4.81E-03
55	GO:0019899: enzyme binding	5.36E-03
56	GO:0008235: metalloexopeptidase activity	5.36E-03
57	GO:0052747: sinapyl alcohol dehydrogenase activity	6.22E-03
58	GO:0008135: translation factor activity, RNA binding	7.14E-03
59	GO:0016798: hydrolase activity, acting on glycosyl bonds	7.43E-03
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.23E-03
61	GO:0008047: enzyme activator activity	1.01E-02
62	GO:0003993: acid phosphatase activity	1.09E-02
63	GO:0015386: potassium:proton antiporter activity	1.12E-02
64	GO:0004177: aminopeptidase activity	1.12E-02
65	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.24E-02
66	GO:0004565: beta-galactosidase activity	1.35E-02
67	GO:0004022: alcohol dehydrogenase (NAD) activity	1.35E-02
68	GO:0031072: heat shock protein binding	1.35E-02
69	GO:0005262: calcium channel activity	1.35E-02
70	GO:0042802: identical protein binding	1.35E-02
71	GO:0008266: poly(U) RNA binding	1.48E-02
72	GO:0008131: primary amine oxidase activity	1.48E-02
73	GO:0008146: sulfotransferase activity	1.60E-02
74	GO:0051287: NAD binding	1.64E-02
75	GO:0008168: methyltransferase activity	1.65E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.73E-02
77	GO:0004601: peroxidase activity	1.73E-02
78	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.73E-02
79	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.73E-02
80	GO:0031409: pigment binding	1.73E-02
81	GO:0016788: hydrolase activity, acting on ester bonds	1.77E-02
82	GO:0051536: iron-sulfur cluster binding	1.86E-02
83	GO:0003690: double-stranded DNA binding	1.89E-02
84	GO:0015079: potassium ion transmembrane transporter activity	2.00E-02
85	GO:0043424: protein histidine kinase binding	2.00E-02
86	GO:0005509: calcium ion binding	2.09E-02
87	GO:0030570: pectate lyase activity	2.42E-02
88	GO:0003727: single-stranded RNA binding	2.57E-02
89	GO:0008514: organic anion transmembrane transporter activity	2.57E-02
90	GO:0047134: protein-disulfide reductase activity	2.72E-02
91	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.04E-02
92	GO:0050662: coenzyme binding	3.20E-02
93	GO:0004791: thioredoxin-disulfide reductase activity	3.20E-02
94	GO:0004872: receptor activity	3.36E-02
95	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.58E-02
96	GO:0000156: phosphorelay response regulator activity	3.87E-02
97	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.87E-02
98	GO:0016759: cellulose synthase activity	4.04E-02
99	GO:0046872: metal ion binding	4.05E-02
100	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.22E-02
101	GO:0016597: amino acid binding	4.40E-02
102	GO:0008375: acetylglucosaminyltransferase activity	4.95E-02
103	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
3	GO:0009507: chloroplast	2.55E-61
4	GO:0009535: chloroplast thylakoid membrane	3.67E-30
5	GO:0009941: chloroplast envelope	4.51E-28
6	GO:0009570: chloroplast stroma	1.45E-26
7	GO:0009579: thylakoid	5.20E-23
8	GO:0005840: ribosome	3.58E-13
9	GO:0009543: chloroplast thylakoid lumen	5.00E-13
10	GO:0009534: chloroplast thylakoid	5.49E-13
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.78E-11
12	GO:0048046: apoplast	1.61E-09
13	GO:0031977: thylakoid lumen	2.59E-09
14	GO:0010319: stromule	1.31E-07
15	GO:0030095: chloroplast photosystem II	3.04E-06
16	GO:0009654: photosystem II oxygen evolving complex	8.04E-06
17	GO:0009523: photosystem II	3.77E-05
18	GO:0019898: extrinsic component of membrane	3.77E-05
19	GO:0042651: thylakoid membrane	1.75E-04
20	GO:0015934: large ribosomal subunit	1.84E-04
21	GO:0015935: small ribosomal subunit	2.01E-04
22	GO:0031969: chloroplast membrane	2.90E-04
23	GO:0042170: plastid membrane	7.62E-04
24	GO:0009706: chloroplast inner membrane	8.99E-04
25	GO:0009528: plastid inner membrane	1.23E-03
26	GO:0005960: glycine cleavage complex	1.78E-03
27	GO:0009527: plastid outer membrane	2.38E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.76E-03
29	GO:0009536: plastid	4.13E-03
30	GO:0016021: integral component of membrane	4.18E-03
31	GO:0009533: chloroplast stromal thylakoid	5.36E-03
32	GO:0010287: plastoglobule	6.13E-03
33	GO:0008180: COP9 signalosome	8.10E-03
34	GO:0005763: mitochondrial small ribosomal subunit	8.10E-03
35	GO:0005618: cell wall	8.92E-03
36	GO:0000311: plastid large ribosomal subunit	1.24E-02
37	GO:0032040: small-subunit processome	1.24E-02
38	GO:0031012: extracellular matrix	1.35E-02
39	GO:0030076: light-harvesting complex	1.60E-02
40	GO:0005875: microtubule associated complex	1.73E-02
41	GO:0009532: plastid stroma	2.13E-02
42	GO:0009522: photosystem I	3.20E-02
43	GO:0009295: nucleoid	4.22E-02
44	GO:0005778: peroxisomal membrane	4.22E-02