co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
3	GO:0019484: beta-alanine catabolic process	0.00E+00
4	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
5	GO:0000188: inactivation of MAPK activity	0.00E+00
6	GO:0016236: macroautophagy	0.00E+00
7	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
8	GO:0007160: cell-matrix adhesion	0.00E+00
9	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
10	GO:0009865: pollen tube adhesion	3.77E-05
11	GO:0006540: glutamate decarboxylation to succinate	3.77E-05
12	GO:0031338: regulation of vesicle fusion	3.77E-05
13	GO:0009450: gamma-aminobutyric acid catabolic process	3.77E-05
14	GO:0055047: generative cell mitosis	3.77E-05
15	GO:0030242: pexophagy	3.77E-05
16	GO:0048367: shoot system development	7.43E-05
17	GO:0051258: protein polymerization	9.40E-05
18	GO:0009727: detection of ethylene stimulus	9.40E-05
19	GO:0042325: regulation of phosphorylation	9.40E-05
20	GO:0010033: response to organic substance	9.40E-05
21	GO:0006013: mannose metabolic process	1.63E-04
22	GO:1900140: regulation of seedling development	1.63E-04
23	GO:0090630: activation of GTPase activity	1.63E-04
24	GO:0006517: protein deglycosylation	1.63E-04
25	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.63E-04
26	GO:0046686: response to cadmium ion	2.25E-04
27	GO:0048194: Golgi vesicle budding	2.40E-04
28	GO:0006020: inositol metabolic process	2.40E-04
29	GO:1901000: regulation of response to salt stress	2.40E-04
30	GO:0016579: protein deubiquitination	3.05E-04
31	GO:1990937: xylan acetylation	3.24E-04
32	GO:0045324: late endosome to vacuole transport	3.24E-04
33	GO:0006536: glutamate metabolic process	3.24E-04
34	GO:0034052: positive regulation of plant-type hypersensitive response	4.13E-04
35	GO:0010225: response to UV-C	4.13E-04
36	GO:0045491: xylan metabolic process	5.07E-04
37	GO:0050665: hydrogen peroxide biosynthetic process	5.07E-04
38	GO:0006751: glutathione catabolic process	5.07E-04
39	GO:0006886: intracellular protein transport	6.24E-04
40	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	7.07E-04
41	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	7.07E-04
42	GO:0006491: N-glycan processing	8.13E-04
43	GO:0006875: cellular metal ion homeostasis	8.13E-04
44	GO:0009690: cytokinin metabolic process	8.13E-04
45	GO:0006605: protein targeting	8.13E-04
46	GO:0052543: callose deposition in cell wall	8.13E-04
47	GO:0048364: root development	8.21E-04
48	GO:0009846: pollen germination	8.40E-04
49	GO:0009651: response to salt stress	9.05E-04
50	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	9.23E-04
51	GO:0006468: protein phosphorylation	9.98E-04
52	GO:0048589: developmental growth	1.04E-03
53	GO:0009051: pentose-phosphate shunt, oxidative branch	1.04E-03
54	GO:0052544: defense response by callose deposition in cell wall	1.40E-03
55	GO:0000398: mRNA splicing, via spliceosome	1.44E-03
56	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.53E-03
57	GO:0006006: glucose metabolic process	1.67E-03
58	GO:0006541: glutamine metabolic process	1.81E-03
59	GO:0002237: response to molecule of bacterial origin	1.81E-03
60	GO:0080188: RNA-directed DNA methylation	1.95E-03
61	GO:0005985: sucrose metabolic process	1.95E-03
62	GO:0006487: protein N-linked glycosylation	2.25E-03
63	GO:0016575: histone deacetylation	2.40E-03
64	GO:0080092: regulation of pollen tube growth	2.72E-03
65	GO:0001944: vasculature development	2.89E-03
66	GO:0009625: response to insect	2.89E-03
67	GO:0045492: xylan biosynthetic process	3.05E-03
68	GO:0080022: primary root development	3.40E-03
69	GO:0010154: fruit development	3.58E-03
70	GO:0008360: regulation of cell shape	3.58E-03
71	GO:0010182: sugar mediated signaling pathway	3.58E-03
72	GO:0006623: protein targeting to vacuole	3.94E-03
73	GO:0010183: pollen tube guidance	3.94E-03
74	GO:0009556: microsporogenesis	3.94E-03
75	GO:0002229: defense response to oomycetes	4.13E-03
76	GO:0046777: protein autophosphorylation	4.33E-03
77	GO:0071281: cellular response to iron ion	4.51E-03
78	GO:0006914: autophagy	4.70E-03
79	GO:0051607: defense response to virus	5.11E-03
80	GO:0001666: response to hypoxia	5.31E-03
81	GO:0016049: cell growth	6.16E-03
82	GO:0008219: cell death	6.38E-03
83	GO:0006499: N-terminal protein myristoylation	6.82E-03
84	GO:0009834: plant-type secondary cell wall biogenesis	6.82E-03
85	GO:0010119: regulation of stomatal movement	7.05E-03
86	GO:0008283: cell proliferation	8.96E-03
87	GO:0000209: protein polyubiquitination	9.22E-03
88	GO:0009908: flower development	9.55E-03
89	GO:0009737: response to abscisic acid	1.00E-02
90	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.02E-02
91	GO:0042538: hyperosmotic salinity response	1.05E-02
92	GO:0009555: pollen development	1.06E-02
93	GO:0035556: intracellular signal transduction	1.12E-02
94	GO:0010224: response to UV-B	1.13E-02
95	GO:0009626: plant-type hypersensitive response	1.30E-02
96	GO:0006511: ubiquitin-dependent protein catabolic process	1.44E-02
97	GO:0018105: peptidyl-serine phosphorylation	1.45E-02
98	GO:0009742: brassinosteroid mediated signaling pathway	1.48E-02
99	GO:0009845: seed germination	1.76E-02
100	GO:0042742: defense response to bacterium	2.15E-02
101	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.26E-02
102	GO:0009739: response to gibberellin	2.26E-02
103	GO:0006470: protein dephosphorylation	2.30E-02
104	GO:0007166: cell surface receptor signaling pathway	2.30E-02
105	GO:0006970: response to osmotic stress	3.01E-02
106	GO:0009860: pollen tube growth	3.01E-02
107	GO:0006810: transport	3.16E-02
108	GO:0009723: response to ethylene	3.16E-02
109	GO:0048366: leaf development	3.20E-02
110	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.40E-02
111	GO:0045892: negative regulation of transcription, DNA-templated	3.82E-02
112	GO:0006869: lipid transport	4.03E-02
113	GO:0009408: response to heat	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
2	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
3	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
4	GO:0005548: phospholipid transporter activity	0.00E+00
5	GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity	0.00E+00
6	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.21E-05
7	GO:0003867: 4-aminobutyrate transaminase activity	3.77E-05
8	GO:0004674: protein serine/threonine kinase activity	7.27E-05
9	GO:0038199: ethylene receptor activity	9.40E-05
10	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.03E-04
11	GO:0016805: dipeptidase activity	1.63E-04
12	GO:0005047: signal recognition particle binding	1.63E-04
13	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.21E-04
14	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	2.40E-04
15	GO:0051740: ethylene binding	2.40E-04
16	GO:0005524: ATP binding	3.19E-04
17	GO:0001106: RNA polymerase II transcription corepressor activity	3.24E-04
18	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.24E-04
19	GO:0017137: Rab GTPase binding	4.13E-04
20	GO:0005496: steroid binding	4.13E-04
21	GO:0070300: phosphatidic acid binding	6.05E-04
22	GO:0004012: phospholipid-translocating ATPase activity	6.05E-04
23	GO:0004559: alpha-mannosidase activity	6.05E-04
24	GO:0008235: metalloexopeptidase activity	7.07E-04
25	GO:0003843: 1,3-beta-D-glucan synthase activity	9.23E-04
26	GO:0004672: protein kinase activity	1.17E-03
27	GO:0004673: protein histidine kinase activity	1.28E-03
28	GO:0004177: aminopeptidase activity	1.40E-03
29	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.67E-03
30	GO:0000155: phosphorelay sensor kinase activity	1.67E-03
31	GO:0019888: protein phosphatase regulator activity	1.67E-03
32	GO:0004725: protein tyrosine phosphatase activity	2.10E-03
33	GO:0004407: histone deacetylase activity	2.25E-03
34	GO:0043130: ubiquitin binding	2.25E-03
35	GO:0004176: ATP-dependent peptidase activity	2.56E-03
36	GO:0033612: receptor serine/threonine kinase binding	2.56E-03
37	GO:0008270: zinc ion binding	3.30E-03
38	GO:0030276: clathrin binding	3.58E-03
39	GO:0000156: phosphorelay response regulator activity	4.51E-03
40	GO:0008237: metallopeptidase activity	4.90E-03
41	GO:0005515: protein binding	5.59E-03
42	GO:0009931: calcium-dependent protein serine/threonine kinase activity	5.73E-03
43	GO:0004683: calmodulin-dependent protein kinase activity	5.94E-03
44	GO:0003729: mRNA binding	6.36E-03
45	GO:0005096: GTPase activator activity	6.60E-03
46	GO:0004222: metalloendopeptidase activity	6.82E-03
47	GO:0050897: cobalt ion binding	7.05E-03
48	GO:0030145: manganese ion binding	7.05E-03
49	GO:0050661: NADP binding	8.23E-03
50	GO:0016887: ATPase activity	9.22E-03
51	GO:0005198: structural molecule activity	9.73E-03
52	GO:0015171: amino acid transmembrane transporter activity	1.19E-02
53	GO:0016301: kinase activity	1.50E-02
54	GO:0005516: calmodulin binding	1.59E-02
55	GO:0030170: pyridoxal phosphate binding	1.79E-02
56	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.99E-02
57	GO:0005215: transporter activity	2.38E-02
58	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.48E-02
59	GO:0042802: identical protein binding	2.48E-02
60	GO:0046982: protein heterodimerization activity	2.81E-02
61	GO:0000287: magnesium ion binding	2.81E-02
62	GO:0050660: flavin adenine dinucleotide binding	3.16E-02
63	GO:0061630: ubiquitin protein ligase activity	3.45E-02
64	GO:0003924: GTPase activity	4.39E-02
65	GO:0009055: electron carrier activity	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0071561: nucleus-vacuole junction	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0008305: integrin complex	0.00E+00
4	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	3.77E-05
5	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	3.77E-05
6	GO:0005794: Golgi apparatus	1.07E-04
7	GO:0000118: histone deacetylase complex	6.05E-04
8	GO:0000148: 1,3-beta-D-glucan synthase complex	9.23E-04
9	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	9.23E-04
10	GO:0000139: Golgi membrane	1.04E-03
11	GO:0005681: spliceosomal complex	1.05E-03
12	GO:0015030: Cajal body	1.15E-03
13	GO:0043234: protein complex	2.10E-03
14	GO:0005829: cytosol	2.75E-03
15	GO:0005783: endoplasmic reticulum	3.25E-03
16	GO:0005768: endosome	3.36E-03
17	GO:0005770: late endosome	3.58E-03
18	GO:0000785: chromatin	4.32E-03
19	GO:0005643: nuclear pore	6.38E-03
20	GO:0016021: integral component of membrane	8.18E-03
21	GO:0010008: endosome membrane	1.27E-02
22	GO:0012505: endomembrane system	1.39E-02
23	GO:0005802: trans-Golgi network	1.70E-02
24	GO:0005774: vacuolar membrane	1.86E-02
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.05E-02
26	GO:0005789: endoplasmic reticulum membrane	3.28E-02