co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900151: regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	0.00E+00
2	GO:0034975: protein folding in endoplasmic reticulum	6.26E-05
3	GO:0015760: glucose-6-phosphate transport	6.26E-05
4	GO:0010230: alternative respiration	6.26E-05
5	GO:0060211: regulation of nuclear-transcribed mRNA poly(A) tail shortening	6.26E-05
6	GO:0051775: response to redox state	6.26E-05
7	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	1.52E-04
8	GO:0006212: uracil catabolic process	1.52E-04
9	GO:0019374: galactolipid metabolic process	1.52E-04
10	GO:0031349: positive regulation of defense response	1.52E-04
11	GO:0015712: hexose phosphate transport	1.52E-04
12	GO:0019483: beta-alanine biosynthetic process	1.52E-04
13	GO:0015714: phosphoenolpyruvate transport	2.57E-04
14	GO:0035436: triose phosphate transmembrane transport	2.57E-04
15	GO:0000187: activation of MAPK activity	3.73E-04
16	GO:0010109: regulation of photosynthesis	4.99E-04
17	GO:0015713: phosphoglycerate transport	4.99E-04
18	GO:2000038: regulation of stomatal complex development	4.99E-04
19	GO:0030041: actin filament polymerization	6.32E-04
20	GO:0009627: systemic acquired resistance	6.80E-04
21	GO:0002238: response to molecule of fungal origin	7.73E-04
22	GO:0009643: photosynthetic acclimation	7.73E-04
23	GO:0006499: N-terminal protein myristoylation	8.67E-04
24	GO:2000037: regulation of stomatal complex patterning	9.20E-04
25	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	9.20E-04
26	GO:0043090: amino acid import	1.07E-03
27	GO:0006468: protein phosphorylation	1.11E-03
28	GO:0006644: phospholipid metabolic process	1.24E-03
29	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.24E-03
30	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.24E-03
31	GO:0043068: positive regulation of programmed cell death	1.24E-03
32	GO:0009744: response to sucrose	1.26E-03
33	GO:0051707: response to other organism	1.26E-03
34	GO:0043562: cellular response to nitrogen levels	1.41E-03
35	GO:0051865: protein autoubiquitination	1.58E-03
36	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.58E-03
37	GO:0010205: photoinhibition	1.77E-03
38	GO:0042742: defense response to bacterium	1.80E-03
39	GO:0009688: abscisic acid biosynthetic process	1.96E-03
40	GO:0010162: seed dormancy process	1.96E-03
41	GO:0006995: cellular response to nitrogen starvation	1.96E-03
42	GO:0007064: mitotic sister chromatid cohesion	1.96E-03
43	GO:0006032: chitin catabolic process	1.96E-03
44	GO:0009626: plant-type hypersensitive response	2.10E-03
45	GO:0006790: sulfur compound metabolic process	2.37E-03
46	GO:0012501: programmed cell death	2.37E-03
47	GO:0010229: inflorescence development	2.58E-03
48	GO:0006094: gluconeogenesis	2.58E-03
49	GO:0006807: nitrogen compound metabolic process	2.58E-03
50	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	2.58E-03
51	GO:0006446: regulation of translational initiation	2.80E-03
52	GO:0046854: phosphatidylinositol phosphorylation	3.03E-03
53	GO:0034976: response to endoplasmic reticulum stress	3.26E-03
54	GO:0030150: protein import into mitochondrial matrix	3.49E-03
55	GO:0016998: cell wall macromolecule catabolic process	3.98E-03
56	GO:0009814: defense response, incompatible interaction	4.24E-03
57	GO:0010227: floral organ abscission	4.50E-03
58	GO:0006012: galactose metabolic process	4.50E-03
59	GO:0007166: cell surface receptor signaling pathway	4.64E-03
60	GO:0010154: fruit development	5.59E-03
61	GO:0006623: protein targeting to vacuole	6.17E-03
62	GO:0009749: response to glucose	6.17E-03
63	GO:0000302: response to reactive oxygen species	6.46E-03
64	GO:0007264: small GTPase mediated signal transduction	6.76E-03
65	GO:0016032: viral process	6.76E-03
66	GO:0006952: defense response	7.03E-03
67	GO:0030163: protein catabolic process	7.07E-03
68	GO:0006464: cellular protein modification process	7.38E-03
69	GO:0080167: response to karrikin	7.77E-03
70	GO:0046777: protein autophosphorylation	8.31E-03
71	GO:0016126: sterol biosynthetic process	8.35E-03
72	GO:0009607: response to biotic stimulus	8.68E-03
73	GO:0016311: dephosphorylation	9.70E-03
74	GO:0008219: cell death	1.01E-02
75	GO:0016042: lipid catabolic process	1.12E-02
76	GO:0009651: response to salt stress	1.13E-02
77	GO:0006865: amino acid transport	1.15E-02
78	GO:0042542: response to hydrogen peroxide	1.38E-02
79	GO:0000209: protein polyubiquitination	1.46E-02
80	GO:0009644: response to high light intensity	1.50E-02
81	GO:0005975: carbohydrate metabolic process	1.51E-02
82	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.63E-02
83	GO:0000165: MAPK cascade	1.63E-02
84	GO:0009846: pollen germination	1.67E-02
85	GO:0006096: glycolytic process	1.98E-02
86	GO:0009738: abscisic acid-activated signaling pathway	1.98E-02
87	GO:0048316: seed development	2.02E-02
88	GO:0055114: oxidation-reduction process	2.13E-02
89	GO:0009624: response to nematode	2.25E-02
90	GO:0009737: response to abscisic acid	2.31E-02
91	GO:0009845: seed germination	2.80E-02
92	GO:0006413: translational initiation	3.17E-02
93	GO:0040008: regulation of growth	3.22E-02
94	GO:0050832: defense response to fungus	3.50E-02
95	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.60E-02
96	GO:0010468: regulation of gene expression	3.77E-02
97	GO:0009617: response to bacterium	3.77E-02
98	GO:0009414: response to water deprivation	4.03E-02
99	GO:0006979: response to oxidative stress	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0015370: solute:sodium symporter activity	0.00E+00
2	GO:0003837: beta-ureidopropionase activity	0.00E+00
3	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
4	GO:0000247: C-8 sterol isomerase activity	0.00E+00
5	GO:0047750: cholestenol delta-isomerase activity	0.00E+00
6	GO:0004674: protein serine/threonine kinase activity	1.37E-05
7	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	6.26E-05
8	GO:0004190: aspartic-type endopeptidase activity	1.34E-04
9	GO:0015152: glucose-6-phosphate transmembrane transporter activity	1.52E-04
10	GO:0015036: disulfide oxidoreductase activity	1.52E-04
11	GO:0071917: triose-phosphate transmembrane transporter activity	2.57E-04
12	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	2.57E-04
13	GO:0003756: protein disulfide isomerase activity	2.73E-04
14	GO:0005509: calcium ion binding	2.99E-04
15	GO:0031176: endo-1,4-beta-xylanase activity	3.73E-04
16	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	3.73E-04
17	GO:0035529: NADH pyrophosphatase activity	3.73E-04
18	GO:0015204: urea transmembrane transporter activity	4.99E-04
19	GO:0015120: phosphoglycerate transmembrane transporter activity	4.99E-04
20	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	6.32E-04
21	GO:0047631: ADP-ribose diphosphatase activity	6.32E-04
22	GO:0016301: kinase activity	6.55E-04
23	GO:0000210: NAD+ diphosphatase activity	7.73E-04
24	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.20E-04
25	GO:0004656: procollagen-proline 4-dioxygenase activity	9.20E-04
26	GO:0004620: phospholipase activity	1.07E-03
27	GO:0004034: aldose 1-epimerase activity	1.24E-03
28	GO:0004708: MAP kinase kinase activity	1.24E-03
29	GO:0015293: symporter activity	1.41E-03
30	GO:0051287: NAD binding	1.51E-03
31	GO:0047617: acyl-CoA hydrolase activity	1.77E-03
32	GO:0004568: chitinase activity	1.96E-03
33	GO:0015266: protein channel activity	2.58E-03
34	GO:0005315: inorganic phosphate transmembrane transporter activity	2.58E-03
35	GO:0031624: ubiquitin conjugating enzyme binding	2.80E-03
36	GO:0031418: L-ascorbic acid binding	3.49E-03
37	GO:0003954: NADH dehydrogenase activity	3.49E-03
38	GO:0016853: isomerase activity	5.88E-03
39	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.07E-03
40	GO:0005524: ATP binding	7.30E-03
41	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	7.70E-03
42	GO:0061630: ubiquitin protein ligase activity	8.18E-03
43	GO:0030247: polysaccharide binding	9.36E-03
44	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.01E-02
45	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.19E-02
46	GO:0003993: acid phosphatase activity	1.23E-02
47	GO:0050661: NADP binding	1.30E-02
48	GO:0015171: amino acid transmembrane transporter activity	1.89E-02
49	GO:0045735: nutrient reservoir activity	1.98E-02
50	GO:0003779: actin binding	2.21E-02
51	GO:0015035: protein disulfide oxidoreductase activity	2.30E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.70E-02
53	GO:0030246: carbohydrate binding	2.75E-02
54	GO:0005507: copper ion binding	2.91E-02
55	GO:0015297: antiporter activity	3.22E-02
56	GO:0003743: translation initiation factor activity	3.72E-02
57	GO:0005506: iron ion binding	4.07E-02
58	GO:0003682: chromatin binding	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	9.14E-07
2	GO:0005911: cell-cell junction	6.26E-05
3	GO:0031304: intrinsic component of mitochondrial inner membrane	1.52E-04
4	GO:0031314: extrinsic component of mitochondrial inner membrane	1.52E-04
5	GO:0030660: Golgi-associated vesicle membrane	4.99E-04
6	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	4.99E-04
7	GO:0005789: endoplasmic reticulum membrane	7.42E-04
8	GO:0016021: integral component of membrane	9.23E-04
9	GO:0031305: integral component of mitochondrial inner membrane	1.24E-03
10	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.24E-03
11	GO:0005740: mitochondrial envelope	1.96E-03
12	GO:0017119: Golgi transport complex	1.96E-03
13	GO:0005765: lysosomal membrane	2.17E-03
14	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.76E-03
15	GO:0016592: mediator complex	6.76E-03
16	GO:0005794: Golgi apparatus	6.87E-03
17	GO:0005576: extracellular region	8.02E-03
18	GO:0005788: endoplasmic reticulum lumen	8.68E-03
19	GO:0000151: ubiquitin ligase complex	1.01E-02
20	GO:0005783: endoplasmic reticulum	1.05E-02
21	GO:0005774: vacuolar membrane	1.18E-02
22	GO:0031902: late endosome membrane	1.34E-02
23	GO:0005887: integral component of plasma membrane	1.56E-02
24	GO:0005777: peroxisome	2.35E-02
25	GO:0009543: chloroplast thylakoid lumen	2.65E-02
26	GO:0005802: trans-Golgi network	3.28E-02
27	GO:0005768: endosome	3.72E-02
28	GO:0046658: anchored component of plasma membrane	4.06E-02
29	GO:0048046: apoplast	4.49E-02