co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
9	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
10	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
11	GO:0006412: translation	1.19E-18
12	GO:0032544: plastid translation	3.83E-16
13	GO:0042254: ribosome biogenesis	1.53E-10
14	GO:0009658: chloroplast organization	2.26E-09
15	GO:0015979: photosynthesis	1.43E-08
16	GO:0009735: response to cytokinin	6.22E-07
17	GO:0010027: thylakoid membrane organization	8.05E-06
18	GO:0090391: granum assembly	2.42E-05
19	GO:0015976: carbon utilization	9.33E-05
20	GO:0015995: chlorophyll biosynthetic process	1.62E-04
21	GO:0010196: nonphotochemical quenching	3.62E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	3.94E-04
23	GO:0042759: long-chain fatty acid biosynthetic process	3.94E-04
24	GO:0042371: vitamin K biosynthetic process	3.94E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	3.94E-04
26	GO:0060627: regulation of vesicle-mediated transport	3.94E-04
27	GO:0043489: RNA stabilization	3.94E-04
28	GO:1904966: positive regulation of vitamin E biosynthetic process	3.94E-04
29	GO:0042742: defense response to bacterium	4.09E-04
30	GO:0000413: protein peptidyl-prolyl isomerization	4.50E-04
31	GO:0006633: fatty acid biosynthetic process	4.80E-04
32	GO:0045454: cell redox homeostasis	6.12E-04
33	GO:0006783: heme biosynthetic process	6.63E-04
34	GO:0006869: lipid transport	7.36E-04
35	GO:0006568: tryptophan metabolic process	8.55E-04
36	GO:0010024: phytochromobilin biosynthetic process	8.55E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.55E-04
38	GO:0016042: lipid catabolic process	8.77E-04
39	GO:0018119: peptidyl-cysteine S-nitrosylation	1.05E-03
40	GO:0009627: systemic acquired resistance	1.19E-03
41	GO:0071492: cellular response to UV-A	1.39E-03
42	GO:0006696: ergosterol biosynthetic process	1.39E-03
43	GO:0006065: UDP-glucuronate biosynthetic process	1.39E-03
44	GO:0006788: heme oxidation	1.39E-03
45	GO:0009817: defense response to fungus, incompatible interaction	1.44E-03
46	GO:0010143: cutin biosynthetic process	1.53E-03
47	GO:0010207: photosystem II assembly	1.53E-03
48	GO:0010088: phloem development	2.00E-03
49	GO:0006986: response to unfolded protein	2.00E-03
50	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.00E-03
51	GO:2001141: regulation of RNA biosynthetic process	2.00E-03
52	GO:0051085: chaperone mediated protein folding requiring cofactor	2.00E-03
53	GO:0006241: CTP biosynthetic process	2.00E-03
54	GO:0009650: UV protection	2.00E-03
55	GO:0033014: tetrapyrrole biosynthetic process	2.00E-03
56	GO:0006424: glutamyl-tRNA aminoacylation	2.00E-03
57	GO:0006165: nucleoside diphosphate phosphorylation	2.00E-03
58	GO:0046739: transport of virus in multicellular host	2.00E-03
59	GO:0006228: UTP biosynthetic process	2.00E-03
60	GO:0006631: fatty acid metabolic process	2.43E-03
61	GO:0010037: response to carbon dioxide	2.69E-03
62	GO:0009956: radial pattern formation	2.69E-03
63	GO:0071486: cellular response to high light intensity	2.69E-03
64	GO:0015689: molybdate ion transport	2.69E-03
65	GO:0009765: photosynthesis, light harvesting	2.69E-03
66	GO:0006183: GTP biosynthetic process	2.69E-03
67	GO:2000122: negative regulation of stomatal complex development	2.69E-03
68	GO:0042991: transcription factor import into nucleus	2.69E-03
69	GO:0006021: inositol biosynthetic process	2.69E-03
70	GO:0009411: response to UV	3.07E-03
71	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.07E-03
72	GO:0019722: calcium-mediated signaling	3.33E-03
73	GO:0006564: L-serine biosynthetic process	3.44E-03
74	GO:0010236: plastoquinone biosynthetic process	3.44E-03
75	GO:0031365: N-terminal protein amino acid modification	3.44E-03
76	GO:0007094: mitotic spindle assembly checkpoint	3.44E-03
77	GO:0016123: xanthophyll biosynthetic process	3.44E-03
78	GO:0048359: mucilage metabolic process involved in seed coat development	3.44E-03
79	GO:0032543: mitochondrial translation	3.44E-03
80	GO:0016120: carotene biosynthetic process	3.44E-03
81	GO:0042335: cuticle development	3.91E-03
82	GO:0042549: photosystem II stabilization	4.26E-03
83	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.26E-03
84	GO:0000470: maturation of LSU-rRNA	4.26E-03
85	GO:0006796: phosphate-containing compound metabolic process	4.26E-03
86	GO:0010190: cytochrome b6f complex assembly	4.26E-03
87	GO:1901259: chloroplast rRNA processing	5.13E-03
88	GO:0010189: vitamin E biosynthetic process	5.13E-03
89	GO:0010019: chloroplast-nucleus signaling pathway	5.13E-03
90	GO:0010555: response to mannitol	5.13E-03
91	GO:0009955: adaxial/abaxial pattern specification	5.13E-03
92	GO:0042372: phylloquinone biosynthetic process	5.13E-03
93	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.13E-03
94	GO:0006694: steroid biosynthetic process	5.13E-03
95	GO:0006400: tRNA modification	6.06E-03
96	GO:0009828: plant-type cell wall loosening	6.31E-03
97	GO:0007267: cell-cell signaling	6.71E-03
98	GO:0006353: DNA-templated transcription, termination	7.05E-03
99	GO:0030091: protein repair	7.05E-03
100	GO:0009642: response to light intensity	7.05E-03
101	GO:0042255: ribosome assembly	7.05E-03
102	GO:0009808: lignin metabolic process	8.09E-03
103	GO:0071482: cellular response to light stimulus	8.09E-03
104	GO:0010497: plasmodesmata-mediated intercellular transport	8.09E-03
105	GO:0006526: arginine biosynthetic process	8.09E-03
106	GO:0015780: nucleotide-sugar transport	9.18E-03
107	GO:0018298: protein-chromophore linkage	9.86E-03
108	GO:0009790: embryo development	1.01E-02
109	GO:0006779: porphyrin-containing compound biosynthetic process	1.03E-02
110	GO:0007346: regulation of mitotic cell cycle	1.03E-02
111	GO:0009834: plant-type secondary cell wall biogenesis	1.09E-02
112	GO:0009631: cold acclimation	1.14E-02
113	GO:0006782: protoporphyrinogen IX biosynthetic process	1.15E-02
114	GO:0045490: pectin catabolic process	1.25E-02
115	GO:0009637: response to blue light	1.25E-02
116	GO:0006352: DNA-templated transcription, initiation	1.28E-02
117	GO:0006415: translational termination	1.28E-02
118	GO:0010015: root morphogenesis	1.28E-02
119	GO:0009773: photosynthetic electron transport in photosystem I	1.28E-02
120	GO:0043085: positive regulation of catalytic activity	1.28E-02
121	GO:0034599: cellular response to oxidative stress	1.31E-02
122	GO:0016024: CDP-diacylglycerol biosynthetic process	1.41E-02
123	GO:0006839: mitochondrial transport	1.43E-02
124	GO:0006457: protein folding	1.52E-02
125	GO:0006006: glucose metabolic process	1.54E-02
126	GO:0009725: response to hormone	1.54E-02
127	GO:0009767: photosynthetic electron transport chain	1.54E-02
128	GO:2000012: regulation of auxin polar transport	1.54E-02
129	GO:0010114: response to red light	1.62E-02
130	GO:0019253: reductive pentose-phosphate cycle	1.68E-02
131	GO:0010020: chloroplast fission	1.68E-02
132	GO:0009933: meristem structural organization	1.68E-02
133	GO:0019762: glucosinolate catabolic process	1.96E-02
134	GO:0010025: wax biosynthetic process	1.96E-02
135	GO:0009664: plant-type cell wall organization	2.04E-02
136	GO:0009409: response to cold	2.06E-02
137	GO:0009826: unidimensional cell growth	2.07E-02
138	GO:0019344: cysteine biosynthetic process	2.11E-02
139	GO:0000027: ribosomal large subunit assembly	2.11E-02
140	GO:0007010: cytoskeleton organization	2.11E-02
141	GO:0009736: cytokinin-activated signaling pathway	2.19E-02
142	GO:0051603: proteolysis involved in cellular protein catabolic process	2.26E-02
143	GO:0006418: tRNA aminoacylation for protein translation	2.27E-02
144	GO:0009768: photosynthesis, light harvesting in photosystem I	2.27E-02
145	GO:0009793: embryo development ending in seed dormancy	2.33E-02
146	GO:0055114: oxidation-reduction process	2.39E-02
147	GO:0061077: chaperone-mediated protein folding	2.43E-02
148	GO:0030245: cellulose catabolic process	2.59E-02
149	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.96E-02
150	GO:0016117: carotenoid biosynthetic process	3.09E-02
151	GO:0080022: primary root development	3.27E-02
152	GO:0008033: tRNA processing	3.27E-02
153	GO:0006662: glycerol ether metabolic process	3.45E-02
154	GO:0010305: leaf vascular tissue pattern formation	3.45E-02
155	GO:0006520: cellular amino acid metabolic process	3.45E-02
156	GO:0007018: microtubule-based movement	3.63E-02
157	GO:0008654: phospholipid biosynthetic process	3.82E-02
158	GO:0009791: post-embryonic development	3.82E-02
159	GO:0048825: cotyledon development	3.82E-02
160	GO:0016132: brassinosteroid biosynthetic process	4.01E-02
161	GO:0000302: response to reactive oxygen species	4.01E-02
162	GO:0006508: proteolysis	4.13E-02
163	GO:0032502: developmental process	4.20E-02
164	GO:1901657: glycosyl compound metabolic process	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
13	GO:0019843: rRNA binding	4.71E-25
14	GO:0003735: structural constituent of ribosome	2.34E-21
15	GO:0051920: peroxiredoxin activity	5.96E-08
16	GO:0016209: antioxidant activity	2.11E-07
17	GO:0016788: hydrolase activity, acting on ester bonds	5.37E-06
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.74E-06
19	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.94E-06
20	GO:0052689: carboxylic ester hydrolase activity	1.53E-05
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.42E-05
22	GO:0043495: protein anchor	9.33E-05
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.94E-04
24	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.94E-04
25	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.94E-04
26	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.94E-04
27	GO:0004560: alpha-L-fucosidase activity	3.94E-04
28	GO:0004655: porphobilinogen synthase activity	3.94E-04
29	GO:0009374: biotin binding	3.94E-04
30	GO:0051287: NAD binding	5.84E-04
31	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	8.55E-04
32	GO:0004617: phosphoglycerate dehydrogenase activity	8.55E-04
33	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.55E-04
34	GO:0004512: inositol-3-phosphate synthase activity	8.55E-04
35	GO:0016168: chlorophyll binding	1.11E-03
36	GO:0004089: carbonate dehydratase activity	1.36E-03
37	GO:0030267: glyoxylate reductase (NADP) activity	1.39E-03
38	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.39E-03
39	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.39E-03
40	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.39E-03
41	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.39E-03
42	GO:0070330: aromatase activity	1.39E-03
43	GO:0005504: fatty acid binding	1.39E-03
44	GO:0050734: hydroxycinnamoyltransferase activity	1.39E-03
45	GO:0002161: aminoacyl-tRNA editing activity	1.39E-03
46	GO:0004148: dihydrolipoyl dehydrogenase activity	1.39E-03
47	GO:0008266: poly(U) RNA binding	1.53E-03
48	GO:0008289: lipid binding	1.78E-03
49	GO:0016851: magnesium chelatase activity	2.00E-03
50	GO:0004550: nucleoside diphosphate kinase activity	2.00E-03
51	GO:0043023: ribosomal large subunit binding	2.00E-03
52	GO:0008097: 5S rRNA binding	2.00E-03
53	GO:0016149: translation release factor activity, codon specific	2.00E-03
54	GO:0005528: FK506 binding	2.12E-03
55	GO:0004392: heme oxygenase (decyclizing) activity	2.69E-03
56	GO:0001053: plastid sigma factor activity	2.69E-03
57	GO:0016836: hydro-lyase activity	2.69E-03
58	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.69E-03
59	GO:0016987: sigma factor activity	2.69E-03
60	GO:0045430: chalcone isomerase activity	2.69E-03
61	GO:0015098: molybdate ion transmembrane transporter activity	2.69E-03
62	GO:0022891: substrate-specific transmembrane transporter activity	3.07E-03
63	GO:0030570: pectate lyase activity	3.07E-03
64	GO:0004040: amidase activity	3.44E-03
65	GO:0003989: acetyl-CoA carboxylase activity	3.44E-03
66	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.44E-03
67	GO:0018685: alkane 1-monooxygenase activity	3.44E-03
68	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.26E-03
69	GO:0004130: cytochrome-c peroxidase activity	4.26E-03
70	GO:0016208: AMP binding	4.26E-03
71	GO:0016462: pyrophosphatase activity	4.26E-03
72	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.26E-03
73	GO:0016688: L-ascorbate peroxidase activity	4.26E-03
74	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.00E-03
75	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.13E-03
76	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.13E-03
77	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.13E-03
78	GO:0102391: decanoate--CoA ligase activity	5.13E-03
79	GO:0004601: peroxidase activity	5.27E-03
80	GO:0004467: long-chain fatty acid-CoA ligase activity	6.06E-03
81	GO:0008235: metalloexopeptidase activity	6.06E-03
82	GO:0004427: inorganic diphosphatase activity	6.06E-03
83	GO:0019899: enzyme binding	6.06E-03
84	GO:0004033: aldo-keto reductase (NADP) activity	7.05E-03
85	GO:0030674: protein binding, bridging	7.05E-03
86	GO:0052747: sinapyl alcohol dehydrogenase activity	7.05E-03
87	GO:0102483: scopolin beta-glucosidase activity	8.89E-03
88	GO:0003747: translation release factor activity	9.18E-03
89	GO:0047617: acyl-CoA hydrolase activity	1.03E-02
90	GO:0030145: manganese ion binding	1.14E-02
91	GO:0008047: enzyme activator activity	1.15E-02
92	GO:0003746: translation elongation factor activity	1.25E-02
93	GO:0004177: aminopeptidase activity	1.28E-02
94	GO:0008422: beta-glucosidase activity	1.37E-02
95	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.41E-02
96	GO:0000049: tRNA binding	1.41E-02
97	GO:0031072: heat shock protein binding	1.54E-02
98	GO:0004185: serine-type carboxypeptidase activity	1.62E-02
99	GO:0042802: identical protein binding	1.69E-02
100	GO:0051537: 2 iron, 2 sulfur cluster binding	1.75E-02
101	GO:0031409: pigment binding	1.96E-02
102	GO:0004857: enzyme inhibitor activity	2.11E-02
103	GO:0051087: chaperone binding	2.27E-02
104	GO:0045735: nutrient reservoir activity	2.59E-02
105	GO:0008810: cellulase activity	2.75E-02
106	GO:0003727: single-stranded RNA binding	2.92E-02
107	GO:0008514: organic anion transmembrane transporter activity	2.92E-02
108	GO:0030599: pectinesterase activity	2.93E-02
109	GO:0047134: protein-disulfide reductase activity	3.09E-02
110	GO:0004812: aminoacyl-tRNA ligase activity	3.09E-02
111	GO:0051082: unfolded protein binding	3.11E-02
112	GO:0008080: N-acetyltransferase activity	3.45E-02
113	GO:0004791: thioredoxin-disulfide reductase activity	3.63E-02
114	GO:0010181: FMN binding	3.63E-02
115	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.01E-02
116	GO:0016740: transferase activity	4.14E-02
117	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.39E-02
118	GO:0000156: phosphorelay response regulator activity	4.39E-02
119	GO:0016791: phosphatase activity	4.59E-02
120	GO:0003924: GTPase activity	4.59E-02
121	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.79E-02
122	GO:0016597: amino acid binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009570: chloroplast stroma	1.23E-54
5	GO:0009507: chloroplast	2.92E-50
6	GO:0009941: chloroplast envelope	6.11E-37
7	GO:0009579: thylakoid	1.96E-27
8	GO:0005840: ribosome	1.64E-21
9	GO:0009535: chloroplast thylakoid membrane	1.44E-19
10	GO:0009534: chloroplast thylakoid	1.74E-13
11	GO:0048046: apoplast	4.22E-13
12	GO:0009543: chloroplast thylakoid lumen	1.44E-12
13	GO:0031977: thylakoid lumen	5.42E-12
14	GO:0009505: plant-type cell wall	3.32E-07
15	GO:0005618: cell wall	1.02E-05
16	GO:0009536: plastid	1.13E-05
17	GO:0009654: photosystem II oxygen evolving complex	1.17E-05
18	GO:0016020: membrane	3.45E-05
19	GO:0000311: plastid large ribosomal subunit	8.22E-05
20	GO:0030095: chloroplast photosystem II	1.21E-04
21	GO:0005576: extracellular region	1.60E-04
22	GO:0046658: anchored component of plasma membrane	1.89E-04
23	GO:0042651: thylakoid membrane	2.25E-04
24	GO:0009547: plastid ribosome	3.94E-04
25	GO:0019898: extrinsic component of membrane	5.97E-04
26	GO:0031225: anchored component of membrane	6.90E-04
27	GO:0010319: stromule	8.95E-04
28	GO:0009317: acetyl-CoA carboxylase complex	1.39E-03
29	GO:0010007: magnesium chelatase complex	1.39E-03
30	GO:0000312: plastid small ribosomal subunit	1.53E-03
31	GO:0015934: large ribosomal subunit	1.74E-03
32	GO:0015935: small ribosomal subunit	2.57E-03
33	GO:0005828: kinetochore microtubule	2.69E-03
34	GO:0000776: kinetochore	3.44E-03
35	GO:0009523: photosystem II	4.86E-03
36	GO:0000777: condensed chromosome kinetochore	5.13E-03
37	GO:0010369: chromocenter	5.13E-03
38	GO:0009533: chloroplast stromal thylakoid	6.06E-03
39	GO:0009706: chloroplast inner membrane	6.19E-03
40	GO:0022625: cytosolic large ribosomal subunit	7.90E-03
41	GO:0009539: photosystem II reaction center	8.09E-03
42	GO:0005763: mitochondrial small ribosomal subunit	9.18E-03
43	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.18E-03
44	GO:0005876: spindle microtubule	1.03E-02
45	GO:0090404: pollen tube tip	1.28E-02
46	GO:0031012: extracellular matrix	1.54E-02
47	GO:0030076: light-harvesting complex	1.82E-02
48	GO:0005875: microtubule associated complex	1.96E-02
49	GO:0043234: protein complex	1.96E-02
50	GO:0009532: plastid stroma	2.43E-02
51	GO:0005874: microtubule	2.72E-02
52	GO:0031969: chloroplast membrane	2.84E-02
53	GO:0022626: cytosolic ribosome	2.91E-02
54	GO:0005871: kinesin complex	3.09E-02
55	GO:0009522: photosystem I	3.63E-02
56	GO:0010287: plastoglobule	3.69E-02
57	GO:0005778: peroxisomal membrane	4.79E-02
58	GO:0009295: nucleoid	4.79E-02
59	GO:0005759: mitochondrial matrix	4.87E-02