Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043171: peptide catabolic process0.00E+00
2GO:0010378: temperature compensation of the circadian clock0.00E+00
3GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
4GO:0071311: cellular response to acetate0.00E+00
5GO:0071260: cellular response to mechanical stimulus0.00E+00
6GO:0000390: spliceosomal complex disassembly0.00E+00
7GO:0010203: response to very low fluence red light stimulus0.00E+00
8GO:0009768: photosynthesis, light harvesting in photosystem I1.56E-07
9GO:0009645: response to low light intensity stimulus6.60E-06
10GO:0018298: protein-chromophore linkage8.16E-06
11GO:0010218: response to far red light1.05E-05
12GO:0009416: response to light stimulus1.76E-05
13GO:0010600: regulation of auxin biosynthetic process6.89E-05
14GO:0048573: photoperiodism, flowering1.01E-04
15GO:0000380: alternative mRNA splicing, via spliceosome1.08E-04
16GO:0009409: response to cold1.23E-04
17GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.12E-04
18GO:0009769: photosynthesis, light harvesting in photosystem II2.76E-04
19GO:0010161: red light signaling pathway2.76E-04
20GO:1902265: abscisic acid homeostasis3.29E-04
21GO:0015812: gamma-aminobutyric acid transport3.29E-04
22GO:0032958: inositol phosphate biosynthetic process3.29E-04
23GO:0010201: response to continuous far red light stimulus by the high-irradiance response system3.29E-04
24GO:1990641: response to iron ion starvation3.29E-04
25GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.29E-04
26GO:0010928: regulation of auxin mediated signaling pathway3.48E-04
27GO:0007623: circadian rhythm3.49E-04
28GO:0009585: red, far-red light phototransduction4.57E-04
29GO:0051170: nuclear import7.18E-04
30GO:0048209: regulation of vesicle targeting, to, from or within Golgi7.18E-04
31GO:0030003: cellular cation homeostasis7.18E-04
32GO:0001736: establishment of planar polarity7.18E-04
33GO:0009257: 10-formyltetrahydrofolate biosynthetic process7.18E-04
34GO:0006611: protein export from nucleus7.18E-04
35GO:0032509: endosome transport via multivesicular body sorting pathway7.18E-04
36GO:0006101: citrate metabolic process7.18E-04
37GO:0006816: calcium ion transport8.13E-04
38GO:0009817: defense response to fungus, incompatible interaction1.04E-03
39GO:0080167: response to karrikin1.12E-03
40GO:0017006: protein-tetrapyrrole linkage1.16E-03
41GO:0042780: tRNA 3'-end processing1.16E-03
42GO:0090630: activation of GTPase activity1.16E-03
43GO:0000055: ribosomal large subunit export from nucleus1.16E-03
44GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.16E-03
45GO:0042256: mature ribosome assembly1.16E-03
46GO:1902448: positive regulation of shade avoidance1.16E-03
47GO:0042344: indole glucosinolate catabolic process1.16E-03
48GO:0032012: regulation of ARF protein signal transduction1.16E-03
49GO:0006954: inflammatory response1.16E-03
50GO:0071230: cellular response to amino acid stimulus1.16E-03
51GO:0016255: attachment of GPI anchor to protein1.16E-03
52GO:0015979: photosynthesis1.41E-03
53GO:0009737: response to abscisic acid1.45E-03
54GO:0034976: response to endoplasmic reticulum stress1.47E-03
55GO:0006020: inositol metabolic process1.67E-03
56GO:0010601: positive regulation of auxin biosynthetic process1.67E-03
57GO:0009584: detection of visible light1.67E-03
58GO:0009113: purine nucleobase biosynthetic process1.67E-03
59GO:0015749: monosaccharide transport1.67E-03
60GO:1901332: negative regulation of lateral root development1.67E-03
61GO:0009651: response to salt stress1.79E-03
62GO:0006874: cellular calcium ion homeostasis1.80E-03
63GO:0042542: response to hydrogen peroxide1.83E-03
64GO:0009640: photomorphogenesis1.92E-03
65GO:0010114: response to red light1.92E-03
66GO:0048511: rhythmic process1.97E-03
67GO:0008643: carbohydrate transport2.12E-03
68GO:0009644: response to high light intensity2.12E-03
69GO:0010017: red or far-red light signaling pathway2.16E-03
70GO:0006646: phosphatidylethanolamine biosynthetic process2.24E-03
71GO:0009687: abscisic acid metabolic process2.24E-03
72GO:0015743: malate transport2.24E-03
73GO:0009765: photosynthesis, light harvesting2.24E-03
74GO:0030104: water homeostasis2.24E-03
75GO:0071215: cellular response to abscisic acid stimulus2.36E-03
76GO:0043097: pyrimidine nucleoside salvage2.87E-03
77GO:0007029: endoplasmic reticulum organization2.87E-03
78GO:0048578: positive regulation of long-day photoperiodism, flowering2.87E-03
79GO:0048544: recognition of pollen3.47E-03
80GO:0006814: sodium ion transport3.47E-03
81GO:0042752: regulation of circadian rhythm3.47E-03
82GO:0006206: pyrimidine nucleobase metabolic process3.54E-03
83GO:0000741: karyogamy3.54E-03
84GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.54E-03
85GO:0042732: D-xylose metabolic process3.54E-03
86GO:0031053: primary miRNA processing3.54E-03
87GO:0006970: response to osmotic stress3.91E-03
88GO:0009942: longitudinal axis specification4.26E-03
89GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.26E-03
90GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.26E-03
91GO:0000911: cytokinesis by cell plate formation4.26E-03
92GO:0017148: negative regulation of translation4.26E-03
93GO:0009396: folic acid-containing compound biosynthetic process5.03E-03
94GO:0010044: response to aluminum ion5.03E-03
95GO:0048437: floral organ development5.03E-03
96GO:0010286: heat acclimation5.13E-03
97GO:0009415: response to water5.85E-03
98GO:0009819: drought recovery5.85E-03
99GO:0010078: maintenance of root meristem identity5.85E-03
100GO:0009704: de-etiolation5.85E-03
101GO:0032508: DNA duplex unwinding5.85E-03
102GO:0006102: isocitrate metabolic process5.85E-03
103GO:0007155: cell adhesion5.85E-03
104GO:0009061: anaerobic respiration5.85E-03
105GO:0035556: intracellular signal transduction6.67E-03
106GO:0001510: RNA methylation6.71E-03
107GO:0010099: regulation of photomorphogenesis6.71E-03
108GO:0009880: embryonic pattern specification6.71E-03
109GO:0009827: plant-type cell wall modification6.71E-03
110GO:0006950: response to stress6.79E-03
111GO:0046685: response to arsenic-containing substance7.60E-03
112GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.60E-03
113GO:0006098: pentose-phosphate shunt7.60E-03
114GO:0090333: regulation of stomatal closure7.60E-03
115GO:0046916: cellular transition metal ion homeostasis7.60E-03
116GO:0000160: phosphorelay signal transduction system7.91E-03
117GO:0006811: ion transport8.30E-03
118GO:0048354: mucilage biosynthetic process involved in seed coat development8.55E-03
119GO:0008202: steroid metabolic process8.55E-03
120GO:0009638: phototropism8.55E-03
121GO:0035999: tetrahydrofolate interconversion8.55E-03
122GO:0030042: actin filament depolymerization8.55E-03
123GO:0010043: response to zinc ion8.71E-03
124GO:0010119: regulation of stomatal movement8.71E-03
125GO:0010228: vegetative to reproductive phase transition of meristem9.37E-03
126GO:0006995: cellular response to nitrogen starvation9.53E-03
127GO:0009641: shade avoidance9.53E-03
128GO:0055062: phosphate ion homeostasis9.53E-03
129GO:0009970: cellular response to sulfate starvation9.53E-03
130GO:0009637: response to blue light9.55E-03
131GO:0045087: innate immune response9.55E-03
132GO:0009682: induced systemic resistance1.06E-02
133GO:0052544: defense response by callose deposition in cell wall1.06E-02
134GO:0048765: root hair cell differentiation1.06E-02
135GO:0016925: protein sumoylation1.16E-02
136GO:0010102: lateral root morphogenesis1.27E-02
137GO:0006807: nitrogen compound metabolic process1.27E-02
138GO:0009718: anthocyanin-containing compound biosynthetic process1.27E-02
139GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.27E-02
140GO:2000012: regulation of auxin polar transport1.27E-02
141GO:0007015: actin filament organization1.38E-02
142GO:0010540: basipetal auxin transport1.38E-02
143GO:0009266: response to temperature stimulus1.38E-02
144GO:0007034: vacuolar transport1.38E-02
145GO:0090351: seedling development1.50E-02
146GO:0010030: positive regulation of seed germination1.50E-02
147GO:0019853: L-ascorbic acid biosynthetic process1.50E-02
148GO:0006406: mRNA export from nucleus1.75E-02
149GO:0009909: regulation of flower development1.85E-02
150GO:0006825: copper ion transport1.87E-02
151GO:0016575: histone deacetylation1.87E-02
152GO:0009695: jasmonic acid biosynthetic process1.87E-02
153GO:0009414: response to water deprivation1.97E-02
154GO:0009738: abscisic acid-activated signaling pathway1.98E-02
155GO:0003333: amino acid transmembrane transport2.00E-02
156GO:0009269: response to desiccation2.00E-02
157GO:0019748: secondary metabolic process2.14E-02
158GO:0016192: vesicle-mediated transport2.16E-02
159GO:0044550: secondary metabolite biosynthetic process2.25E-02
160GO:0009693: ethylene biosynthetic process2.27E-02
161GO:0010227: floral organ abscission2.27E-02
162GO:0006012: galactose metabolic process2.27E-02
163GO:0019722: calcium-mediated signaling2.41E-02
164GO:0070417: cellular response to cold2.55E-02
165GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.55E-02
166GO:0051028: mRNA transport2.55E-02
167GO:0080022: primary root development2.70E-02
168GO:0034220: ion transmembrane transport2.70E-02
169GO:0010501: RNA secondary structure unwinding2.70E-02
170GO:0042391: regulation of membrane potential2.70E-02
171GO:0000413: protein peptidyl-prolyl isomerization2.70E-02
172GO:0010051: xylem and phloem pattern formation2.70E-02
173GO:0010087: phloem or xylem histogenesis2.70E-02
174GO:0042631: cellular response to water deprivation2.70E-02
175GO:0000398: mRNA splicing, via spliceosome2.75E-02
176GO:0007165: signal transduction2.78E-02
177GO:0010197: polar nucleus fusion2.85E-02
178GO:0046323: glucose import2.85E-02
179GO:0009741: response to brassinosteroid2.85E-02
180GO:0006520: cellular amino acid metabolic process2.85E-02
181GO:0009646: response to absence of light3.00E-02
182GO:0006457: protein folding3.05E-02
183GO:0008654: phospholipid biosynthetic process3.15E-02
184GO:0009556: microsporogenesis3.15E-02
185GO:0006635: fatty acid beta-oxidation3.31E-02
186GO:0009630: gravitropism3.47E-02
187GO:1901657: glycosyl compound metabolic process3.63E-02
188GO:0019760: glucosinolate metabolic process3.79E-02
189GO:0006355: regulation of transcription, DNA-templated4.18E-02
190GO:0009911: positive regulation of flower development4.30E-02
191GO:0001666: response to hypoxia4.30E-02
192GO:0010029: regulation of seed germination4.47E-02
193GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.47E-02
194GO:0015995: chlorophyll biosynthetic process4.82E-02
195GO:0009617: response to bacterium4.88E-02
RankGO TermAdjusted P value
1GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
2GO:0010292: GTP:GDP antiporter activity0.00E+00
3GO:0015276: ligand-gated ion channel activity0.00E+00
4GO:0004567: beta-mannosidase activity0.00E+00
5GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
6GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
7GO:0047668: amygdalin beta-glucosidase activity0.00E+00
8GO:0019912: cyclin-dependent protein kinase activating kinase activity0.00E+00
9GO:1990446: U1 snRNP binding0.00E+00
10GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
11GO:0005272: sodium channel activity0.00E+00
12GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
13GO:0010349: L-galactose dehydrogenase activity0.00E+00
14GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
15GO:0009045: xylose isomerase activity0.00E+00
16GO:0080082: esculin beta-glucosidase activity0.00E+00
17GO:0031409: pigment binding8.60E-08
18GO:0016168: chlorophyll binding4.74E-06
19GO:0000828: inositol hexakisphosphate kinase activity3.29E-04
20GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.29E-04
21GO:0031516: far-red light photoreceptor activity3.29E-04
22GO:0033857: diphosphoinositol-pentakisphosphate kinase activity3.29E-04
23GO:0009679: hexose:proton symporter activity3.29E-04
24GO:0035671: enone reductase activity3.29E-04
25GO:0000829: inositol heptakisphosphate kinase activity3.29E-04
26GO:0010013: N-1-naphthylphthalamic acid binding3.29E-04
27GO:0080079: cellobiose glucosidase activity3.29E-04
28GO:0008692: 3-hydroxybutyryl-CoA epimerase activity3.29E-04
29GO:0046870: cadmium ion binding3.29E-04
30GO:0070006: metalloaminopeptidase activity3.29E-04
31GO:0008066: glutamate receptor activity3.29E-04
32GO:0003923: GPI-anchor transamidase activity7.18E-04
33GO:0015180: L-alanine transmembrane transporter activity7.18E-04
34GO:0004352: glutamate dehydrogenase (NAD+) activity7.18E-04
35GO:0004353: glutamate dehydrogenase [NAD(P)+] activity7.18E-04
36GO:0032791: lead ion binding7.18E-04
37GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters7.18E-04
38GO:0009883: red or far-red light photoreceptor activity7.18E-04
39GO:0004609: phosphatidylserine decarboxylase activity7.18E-04
40GO:0003994: aconitate hydratase activity7.18E-04
41GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity7.18E-04
42GO:0004477: methenyltetrahydrofolate cyclohydrolase activity7.18E-04
43GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity7.18E-04
44GO:0004839: ubiquitin activating enzyme activity7.18E-04
45GO:0004329: formate-tetrahydrofolate ligase activity7.18E-04
46GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.18E-04
47GO:0004177: aminopeptidase activity8.13E-04
48GO:0005262: calcium channel activity1.05E-03
49GO:0008020: G-protein coupled photoreceptor activity1.16E-03
50GO:0042781: 3'-tRNA processing endoribonuclease activity1.16E-03
51GO:0004096: catalase activity1.16E-03
52GO:0019948: SUMO activating enzyme activity1.16E-03
53GO:0019829: cation-transporting ATPase activity1.16E-03
54GO:0017150: tRNA dihydrouridine synthase activity1.16E-03
55GO:0050897: cobalt ion binding1.24E-03
56GO:0004970: ionotropic glutamate receptor activity1.32E-03
57GO:0005217: intracellular ligand-gated ion channel activity1.32E-03
58GO:0015181: arginine transmembrane transporter activity1.67E-03
59GO:0043023: ribosomal large subunit binding1.67E-03
60GO:0004165: dodecenoyl-CoA delta-isomerase activity1.67E-03
61GO:0004300: enoyl-CoA hydratase activity1.67E-03
62GO:0015189: L-lysine transmembrane transporter activity1.67E-03
63GO:0048027: mRNA 5'-UTR binding1.67E-03
64GO:0005253: anion channel activity2.24E-03
65GO:0042277: peptide binding2.24E-03
66GO:0004737: pyruvate decarboxylase activity2.24E-03
67GO:0005086: ARF guanyl-nucleotide exchange factor activity2.24E-03
68GO:0005313: L-glutamate transmembrane transporter activity2.24E-03
69GO:0003756: protein disulfide isomerase activity2.56E-03
70GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.87E-03
71GO:0010294: abscisic acid glucosyltransferase activity2.87E-03
72GO:0015145: monosaccharide transmembrane transporter activity2.87E-03
73GO:0008641: small protein activating enzyme activity2.87E-03
74GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.87E-03
75GO:0015562: efflux transmembrane transporter activity3.54E-03
76GO:0000293: ferric-chelate reductase activity3.54E-03
77GO:0030976: thiamine pyrophosphate binding3.54E-03
78GO:0004629: phospholipase C activity3.54E-03
79GO:0019137: thioglucosidase activity3.54E-03
80GO:0005515: protein binding4.04E-03
81GO:0016301: kinase activity4.09E-03
82GO:0070300: phosphatidic acid binding4.26E-03
83GO:0004435: phosphatidylinositol phospholipase C activity4.26E-03
84GO:0003950: NAD+ ADP-ribosyltransferase activity4.26E-03
85GO:0005261: cation channel activity4.26E-03
86GO:0004849: uridine kinase activity4.26E-03
87GO:0000156: phosphorelay response regulator activity4.54E-03
88GO:0015140: malate transmembrane transporter activity5.03E-03
89GO:0016831: carboxy-lyase activity5.03E-03
90GO:0004525: ribonuclease III activity5.85E-03
91GO:0004033: aldo-keto reductase (NADP) activity5.85E-03
92GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen6.06E-03
93GO:0005375: copper ion transmembrane transporter activity6.71E-03
94GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity6.71E-03
95GO:0005267: potassium channel activity6.71E-03
96GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.71E-03
97GO:0102483: scopolin beta-glucosidase activity6.79E-03
98GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity7.60E-03
99GO:0000989: transcription factor activity, transcription factor binding7.60E-03
100GO:0015297: antiporter activity8.33E-03
101GO:0005351: sugar:proton symporter activity8.58E-03
102GO:0004673: protein histidine kinase activity9.53E-03
103GO:0015020: glucuronosyltransferase activity9.53E-03
104GO:0008422: beta-glucosidase activity1.04E-02
105GO:0047372: acylglycerol lipase activity1.06E-02
106GO:0005507: copper ion binding1.12E-02
107GO:0042802: identical protein binding1.20E-02
108GO:0004565: beta-galactosidase activity1.27E-02
109GO:0005315: inorganic phosphate transmembrane transporter activity1.27E-02
110GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.27E-02
111GO:0000155: phosphorelay sensor kinase activity1.27E-02
112GO:0004842: ubiquitin-protein transferase activity1.28E-02
113GO:0031624: ubiquitin conjugating enzyme binding1.38E-02
114GO:0004672: protein kinase activity1.44E-02
115GO:0030552: cAMP binding1.50E-02
116GO:0030553: cGMP binding1.50E-02
117GO:0003712: transcription cofactor activity1.50E-02
118GO:0008270: zinc ion binding1.64E-02
119GO:0004407: histone deacetylase activity1.75E-02
120GO:0031625: ubiquitin protein ligase binding1.85E-02
121GO:0043424: protein histidine kinase binding1.87E-02
122GO:0005216: ion channel activity1.87E-02
123GO:0008324: cation transmembrane transporter activity1.87E-02
124GO:0004707: MAP kinase activity2.00E-02
125GO:0019706: protein-cysteine S-palmitoyltransferase activity2.00E-02
126GO:0004497: monooxygenase activity2.02E-02
127GO:0008514: organic anion transmembrane transporter activity2.41E-02
128GO:0005215: transporter activity2.44E-02
129GO:0005249: voltage-gated potassium channel activity2.70E-02
130GO:0030551: cyclic nucleotide binding2.70E-02
131GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.80E-02
132GO:0046872: metal ion binding3.01E-02
133GO:0019825: oxygen binding3.50E-02
134GO:0015144: carbohydrate transmembrane transporter activity3.56E-02
135GO:0003729: mRNA binding3.98E-02
136GO:0020037: heme binding4.38E-02
137GO:0008375: acetylglucosaminyltransferase activity4.65E-02
138GO:0030247: polysaccharide binding4.82E-02
RankGO TermAdjusted P value
1GO:0071008: U2-type post-mRNA release spliceosomal complex0.00E+00
2GO:0031981: nuclear lumen0.00E+00
3GO:0030076: light-harvesting complex6.21E-08
4GO:0010287: plastoglobule1.83E-05
5GO:0009522: photosystem I2.75E-05
6GO:0016021: integral component of membrane5.17E-05
7GO:0005777: peroxisome1.54E-04
8GO:0005783: endoplasmic reticulum1.55E-04
9GO:0009523: photosystem II4.25E-04
10GO:0005886: plasma membrane6.88E-04
11GO:0032777: Piccolo NuA4 histone acetyltransferase complex7.18E-04
12GO:0016020: membrane1.06E-03
13GO:0042765: GPI-anchor transamidase complex1.16E-03
14GO:0009517: PSII associated light-harvesting complex II2.24E-03
15GO:0010445: nuclear dicing body2.24E-03
16GO:0032586: protein storage vacuole membrane2.24E-03
17GO:0009579: thylakoid2.41E-03
18GO:0005851: eukaryotic translation initiation factor 2B complex3.54E-03
19GO:0016607: nuclear speck3.62E-03
20GO:0000815: ESCRT III complex4.26E-03
21GO:0016363: nuclear matrix4.26E-03
22GO:0005829: cytosol5.72E-03
23GO:0000326: protein storage vacuole6.71E-03
24GO:0000151: ubiquitin ligase complex7.52E-03
25GO:0031090: organelle membrane7.60E-03
26GO:0009534: chloroplast thylakoid8.44E-03
27GO:0016604: nuclear body8.55E-03
28GO:0005774: vacuolar membrane1.27E-02
29GO:0031966: mitochondrial membrane1.55E-02
30GO:0009506: plasmodesma1.66E-02
31GO:0042651: thylakoid membrane1.87E-02
32GO:0015629: actin cytoskeleton2.27E-02
33GO:0005654: nucleoplasm2.90E-02
34GO:0031965: nuclear membrane3.15E-02
35GO:0009535: chloroplast thylakoid membrane3.18E-02
36GO:0005773: vacuole3.30E-02
37GO:0005618: cell wall4.00E-02
38GO:0009705: plant-type vacuole membrane4.10E-02
39GO:0005802: trans-Golgi network4.15E-02
40GO:0005622: intracellular4.81E-02
41GO:0005768: endosome4.98E-02
Gene type



Gene DE type