co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28605

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0006066: alcohol metabolic process	0.00E+00
5	GO:0045176: apical protein localization	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:0042493: response to drug	0.00E+00
8	GO:0042371: vitamin K biosynthetic process	0.00E+00
9	GO:0002184: cytoplasmic translational termination	0.00E+00
10	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
11	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
12	GO:0009773: photosynthetic electron transport in photosystem I	1.21E-09
13	GO:0032544: plastid translation	2.64E-08
14	GO:0042254: ribosome biogenesis	1.18E-06
15	GO:0006412: translation	8.07E-06
16	GO:1904966: positive regulation of vitamin E biosynthetic process	1.80E-04
17	GO:0000481: maturation of 5S rRNA	1.80E-04
18	GO:1904964: positive regulation of phytol biosynthetic process	1.80E-04
19	GO:0042759: long-chain fatty acid biosynthetic process	1.80E-04
20	GO:0034337: RNA folding	1.80E-04
21	GO:0071588: hydrogen peroxide mediated signaling pathway	1.80E-04
22	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.80E-04
23	GO:0006810: transport	1.85E-04
24	GO:0010027: thylakoid membrane organization	2.41E-04
25	GO:0015979: photosynthesis	2.94E-04
26	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.05E-04
27	GO:0034755: iron ion transmembrane transport	4.05E-04
28	GO:1900033: negative regulation of trichome patterning	4.05E-04
29	GO:0010024: phytochromobilin biosynthetic process	4.05E-04
30	GO:0010229: inflorescence development	4.55E-04
31	GO:0010207: photosystem II assembly	5.13E-04
32	GO:0010143: cutin biosynthetic process	5.13E-04
33	GO:0006788: heme oxidation	6.61E-04
34	GO:0090391: granum assembly	6.61E-04
35	GO:0006518: peptide metabolic process	6.61E-04
36	GO:0000027: ribosomal large subunit assembly	7.06E-04
37	GO:0009658: chloroplast organization	9.25E-04
38	GO:0051016: barbed-end actin filament capping	9.45E-04
39	GO:0009650: UV protection	9.45E-04
40	GO:1901332: negative regulation of lateral root development	9.45E-04
41	GO:0010371: regulation of gibberellin biosynthetic process	9.45E-04
42	GO:0051639: actin filament network formation	9.45E-04
43	GO:0009152: purine ribonucleotide biosynthetic process	9.45E-04
44	GO:0046653: tetrahydrofolate metabolic process	9.45E-04
45	GO:0048629: trichome patterning	1.25E-03
46	GO:0051764: actin crosslink formation	1.25E-03
47	GO:0045727: positive regulation of translation	1.25E-03
48	GO:0042335: cuticle development	1.27E-03
49	GO:0000413: protein peptidyl-prolyl isomerization	1.27E-03
50	GO:0009416: response to light stimulus	1.29E-03
51	GO:0006564: L-serine biosynthetic process	1.59E-03
52	GO:0010236: plastoquinone biosynthetic process	1.59E-03
53	GO:0006869: lipid transport	1.93E-03
54	GO:0032973: amino acid export	1.96E-03
55	GO:0009913: epidermal cell differentiation	1.96E-03
56	GO:0010190: cytochrome b6f complex assembly	1.96E-03
57	GO:0048827: phyllome development	1.96E-03
58	GO:0042549: photosystem II stabilization	1.96E-03
59	GO:0000470: maturation of LSU-rRNA	1.96E-03
60	GO:0042372: phylloquinone biosynthetic process	2.35E-03
61	GO:0010019: chloroplast-nucleus signaling pathway	2.35E-03
62	GO:0010196: nonphotochemical quenching	2.77E-03
63	GO:1900057: positive regulation of leaf senescence	2.77E-03
64	GO:0009772: photosynthetic electron transport in photosystem II	2.77E-03
65	GO:0043090: amino acid import	2.77E-03
66	GO:0051693: actin filament capping	2.77E-03
67	GO:0018298: protein-chromophore linkage	3.15E-03
68	GO:0008610: lipid biosynthetic process	3.21E-03
69	GO:0030091: protein repair	3.21E-03
70	GO:0032508: DNA duplex unwinding	3.21E-03
71	GO:0031540: regulation of anthocyanin biosynthetic process	3.21E-03
72	GO:0071482: cellular response to light stimulus	3.67E-03
73	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.15E-03
74	GO:0080144: amino acid homeostasis	4.15E-03
75	GO:0000902: cell morphogenesis	4.15E-03
76	GO:0034599: cellular response to oxidative stress	4.16E-03
77	GO:0010205: photoinhibition	4.65E-03
78	GO:0006779: porphyrin-containing compound biosynthetic process	4.65E-03
79	GO:0006782: protoporphyrinogen IX biosynthetic process	5.18E-03
80	GO:0008285: negative regulation of cell proliferation	5.72E-03
81	GO:0043085: positive regulation of catalytic activity	5.72E-03
82	GO:0006879: cellular iron ion homeostasis	5.72E-03
83	GO:0000038: very long-chain fatty acid metabolic process	5.72E-03
84	GO:0016024: CDP-diacylglycerol biosynthetic process	6.28E-03
85	GO:0010628: positive regulation of gene expression	6.86E-03
86	GO:0006006: glucose metabolic process	6.86E-03
87	GO:0030036: actin cytoskeleton organization	6.86E-03
88	GO:0006364: rRNA processing	6.90E-03
89	GO:0019253: reductive pentose-phosphate cycle	7.46E-03
90	GO:0007015: actin filament organization	7.46E-03
91	GO:0010540: basipetal auxin transport	7.46E-03
92	GO:0048467: gynoecium development	7.46E-03
93	GO:0010025: wax biosynthetic process	8.71E-03
94	GO:0006636: unsaturated fatty acid biosynthetic process	8.71E-03
95	GO:0042023: DNA endoreduplication	8.71E-03
96	GO:0006833: water transport	8.71E-03
97	GO:0080147: root hair cell development	9.37E-03
98	GO:0051017: actin filament bundle assembly	9.37E-03
99	GO:0006487: protein N-linked glycosylation	9.37E-03
100	GO:0007017: microtubule-based process	1.00E-02
101	GO:0009768: photosynthesis, light harvesting in photosystem I	1.00E-02
102	GO:0010073: meristem maintenance	1.00E-02
103	GO:0016042: lipid catabolic process	1.05E-02
104	GO:0031408: oxylipin biosynthetic process	1.07E-02
105	GO:0061077: chaperone-mediated protein folding	1.07E-02
106	GO:0009411: response to UV	1.22E-02
107	GO:0010227: floral organ abscission	1.22E-02
108	GO:0009790: embryo development	1.44E-02
109	GO:0034220: ion transmembrane transport	1.44E-02
110	GO:0006662: glycerol ether metabolic process	1.52E-02
111	GO:0048825: cotyledon development	1.68E-02
112	GO:0045490: pectin catabolic process	1.71E-02
113	GO:0002229: defense response to oomycetes	1.77E-02
114	GO:0000302: response to reactive oxygen species	1.77E-02
115	GO:0010252: auxin homeostasis	2.03E-02
116	GO:0009911: positive regulation of flower development	2.30E-02
117	GO:0009409: response to cold	2.51E-02
118	GO:0015995: chlorophyll biosynthetic process	2.58E-02
119	GO:0016311: dephosphorylation	2.68E-02
120	GO:0009817: defense response to fungus, incompatible interaction	2.77E-02
121	GO:0010311: lateral root formation	2.87E-02
122	GO:0009407: toxin catabolic process	2.97E-02
123	GO:0010218: response to far red light	2.97E-02
124	GO:0009631: cold acclimation	3.08E-02
125	GO:0009637: response to blue light	3.28E-02
126	GO:0009853: photorespiration	3.28E-02
127	GO:0006839: mitochondrial transport	3.60E-02
128	GO:0009640: photomorphogenesis	3.93E-02
129	GO:0008283: cell proliferation	3.93E-02
130	GO:0010114: response to red light	3.93E-02
131	GO:0009636: response to toxic substance	4.27E-02
132	GO:0009408: response to heat	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
5	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
6	GO:0019843: rRNA binding	9.04E-11
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.34E-09
8	GO:0005528: FK506 binding	1.07E-08
9	GO:0003735: structural constituent of ribosome	3.70E-07
10	GO:0001872: (1->3)-beta-D-glucan binding	1.33E-05
11	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.05E-04
12	GO:0004617: phosphoglycerate dehydrogenase activity	4.05E-04
13	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.05E-04
14	GO:0050734: hydroxycinnamoyltransferase activity	6.61E-04
15	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.61E-04
16	GO:0008864: formyltetrahydrofolate deformylase activity	6.61E-04
17	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.61E-04
18	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	9.45E-04
19	GO:0043023: ribosomal large subunit binding	9.45E-04
20	GO:0016788: hydrolase activity, acting on ester bonds	9.52E-04
21	GO:0030570: pectate lyase activity	1.01E-03
22	GO:0043495: protein anchor	1.25E-03
23	GO:0004392: heme oxygenase (decyclizing) activity	1.25E-03
24	GO:0004659: prenyltransferase activity	1.25E-03
25	GO:0004518: nuclease activity	1.79E-03
26	GO:0051015: actin filament binding	1.91E-03
27	GO:0004130: cytochrome-c peroxidase activity	1.96E-03
28	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.96E-03
29	GO:0016688: L-ascorbate peroxidase activity	1.96E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.96E-03
31	GO:0051753: mannan synthase activity	2.35E-03
32	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.35E-03
33	GO:0016168: chlorophyll binding	2.56E-03
34	GO:0019899: enzyme binding	2.77E-03
35	GO:0030247: polysaccharide binding	2.84E-03
36	GO:0043022: ribosome binding	3.21E-03
37	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.67E-03
38	GO:0008289: lipid binding	3.81E-03
39	GO:0005381: iron ion transmembrane transporter activity	4.65E-03
40	GO:0008047: enzyme activator activity	5.18E-03
41	GO:0051287: NAD binding	6.20E-03
42	GO:0004565: beta-galactosidase activity	6.86E-03
43	GO:0008266: poly(U) RNA binding	7.46E-03
44	GO:0052689: carboxylic ester hydrolase activity	7.53E-03
45	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.71E-03
46	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.71E-03
47	GO:0031409: pigment binding	8.71E-03
48	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.71E-03
49	GO:0004871: signal transducer activity	8.84E-03
50	GO:0016746: transferase activity, transferring acyl groups	1.01E-02
51	GO:0009055: electron carrier activity	1.19E-02
52	GO:0022891: substrate-specific transmembrane transporter activity	1.22E-02
53	GO:0016829: lyase activity	1.33E-02
54	GO:0047134: protein-disulfide reductase activity	1.37E-02
55	GO:0008080: N-acetyltransferase activity	1.52E-02
56	GO:0050662: coenzyme binding	1.60E-02
57	GO:0004791: thioredoxin-disulfide reductase activity	1.60E-02
58	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.94E-02
59	GO:0016791: phosphatase activity	2.03E-02
60	GO:0005200: structural constituent of cytoskeleton	2.11E-02
61	GO:0042802: identical protein binding	2.17E-02
62	GO:0016597: amino acid binding	2.20E-02
63	GO:0015250: water channel activity	2.30E-02
64	GO:0046872: metal ion binding	2.31E-02
65	GO:0008375: acetylglucosaminyltransferase activity	2.48E-02
66	GO:0004721: phosphoprotein phosphatase activity	2.58E-02
67	GO:0004222: metalloendopeptidase activity	2.97E-02
68	GO:0003993: acid phosphatase activity	3.39E-02
69	GO:0050661: NADP binding	3.60E-02
70	GO:0004364: glutathione transferase activity	3.82E-02
71	GO:0051537: 2 iron, 2 sulfur cluster binding	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	1.90E-24
3	GO:0009535: chloroplast thylakoid membrane	4.61E-20
4	GO:0009543: chloroplast thylakoid lumen	6.51E-14
5	GO:0009941: chloroplast envelope	2.41E-13
6	GO:0009570: chloroplast stroma	5.50E-13
7	GO:0009579: thylakoid	1.60E-12
8	GO:0031977: thylakoid lumen	2.20E-09
9	GO:0009534: chloroplast thylakoid	7.21E-09
10	GO:0005840: ribosome	1.16E-08
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.24E-08
12	GO:0031225: anchored component of membrane	2.61E-05
13	GO:0046658: anchored component of plasma membrane	1.07E-04
14	GO:0009515: granal stacked thylakoid	1.80E-04
15	GO:0005884: actin filament	3.48E-04
16	GO:0008290: F-actin capping protein complex	4.05E-04
17	GO:0009654: photosystem II oxygen evolving complex	7.77E-04
18	GO:0032432: actin filament bundle	9.45E-04
19	GO:0015630: microtubule cytoskeleton	9.45E-04
20	GO:0016020: membrane	1.10E-03
21	GO:0031969: chloroplast membrane	1.28E-03
22	GO:0019898: extrinsic component of membrane	1.57E-03
23	GO:0008180: COP9 signalosome	4.15E-03
24	GO:0048046: apoplast	5.22E-03
25	GO:0000311: plastid large ribosomal subunit	6.28E-03
26	GO:0032040: small-subunit processome	6.28E-03
27	GO:0009536: plastid	6.36E-03
28	GO:0022625: cytosolic large ribosomal subunit	7.07E-03
29	GO:0030095: chloroplast photosystem II	7.46E-03
30	GO:0030076: light-harvesting complex	8.08E-03
31	GO:0042651: thylakoid membrane	1.00E-02
32	GO:0010287: plastoglobule	1.17E-02
33	GO:0005770: late endosome	1.52E-02
34	GO:0009522: photosystem I	1.60E-02
35	GO:0009523: photosystem II	1.68E-02
36	GO:0005618: cell wall	1.76E-02
37	GO:0019005: SCF ubiquitin ligase complex	2.77E-02
38	GO:0015934: large ribosomal subunit	3.08E-02
39	GO:0000502: proteasome complex	4.86E-02