co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070584: mitochondrion morphogenesis	0.00E+00
2	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
3	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
4	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
5	GO:0046677: response to antibiotic	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:0015979: photosynthesis	5.15E-06
10	GO:0015995: chlorophyll biosynthetic process	2.13E-05
11	GO:0051262: protein tetramerization	1.17E-04
12	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.17E-04
13	GO:0009768: photosynthesis, light harvesting in photosystem I	1.28E-04
14	GO:0090153: regulation of sphingolipid biosynthetic process	2.00E-04
15	GO:0044211: CTP salvage	2.94E-04
16	GO:2000306: positive regulation of photomorphogenesis	3.94E-04
17	GO:0010600: regulation of auxin biosynthetic process	3.94E-04
18	GO:0044206: UMP salvage	3.94E-04
19	GO:0043097: pyrimidine nucleoside salvage	5.00E-04
20	GO:0018298: protein-chromophore linkage	5.59E-04
21	GO:0010405: arabinogalactan protein metabolic process	6.13E-04
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.13E-04
23	GO:0045962: positive regulation of development, heterochronic	6.13E-04
24	GO:0006206: pyrimidine nucleobase metabolic process	6.13E-04
25	GO:0032973: amino acid export	6.13E-04
26	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.13E-04
27	GO:0006655: phosphatidylglycerol biosynthetic process	6.13E-04
28	GO:0009723: response to ethylene	6.37E-04
29	GO:0009910: negative regulation of flower development	6.43E-04
30	GO:0006865: amino acid transport	6.72E-04
31	GO:0009637: response to blue light	7.02E-04
32	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	7.31E-04
33	GO:0010161: red light signaling pathway	8.54E-04
34	GO:0043090: amino acid import	8.54E-04
35	GO:1900056: negative regulation of leaf senescence	8.54E-04
36	GO:0080186: developmental vegetative growth	8.54E-04
37	GO:0010196: nonphotochemical quenching	8.54E-04
38	GO:0051510: regulation of unidimensional cell growth	8.54E-04
39	GO:0010114: response to red light	8.94E-04
40	GO:0009640: photomorphogenesis	8.94E-04
41	GO:0010928: regulation of auxin mediated signaling pathway	9.81E-04
42	GO:0009704: de-etiolation	9.81E-04
43	GO:0050821: protein stabilization	9.81E-04
44	GO:0007186: G-protein coupled receptor signaling pathway	1.11E-03
45	GO:0055114: oxidation-reduction process	1.15E-03
46	GO:0048507: meristem development	1.25E-03
47	GO:0080144: amino acid homeostasis	1.25E-03
48	GO:0008356: asymmetric cell division	1.40E-03
49	GO:0010380: regulation of chlorophyll biosynthetic process	1.40E-03
50	GO:0006949: syncytium formation	1.55E-03
51	GO:0030148: sphingolipid biosynthetic process	1.70E-03
52	GO:0009742: brassinosteroid mediated signaling pathway	1.76E-03
53	GO:0016024: CDP-diacylglycerol biosynthetic process	1.86E-03
54	GO:0080147: root hair cell development	2.74E-03
55	GO:0006289: nucleotide-excision repair	2.74E-03
56	GO:0007623: circadian rhythm	2.85E-03
57	GO:0006874: cellular calcium ion homeostasis	2.93E-03
58	GO:0007166: cell surface receptor signaling pathway	3.25E-03
59	GO:0010017: red or far-red light signaling pathway	3.32E-03
60	GO:0009686: gibberellin biosynthetic process	3.52E-03
61	GO:0070417: cellular response to cold	3.93E-03
62	GO:0009826: unidimensional cell growth	4.22E-03
63	GO:0009741: response to brassinosteroid	4.37E-03
64	GO:0010305: leaf vascular tissue pattern formation	4.37E-03
65	GO:0009658: chloroplast organization	4.38E-03
66	GO:0007018: microtubule-based movement	4.59E-03
67	GO:0006814: sodium ion transport	4.59E-03
68	GO:0009791: post-embryonic development	4.81E-03
69	GO:0008654: phospholipid biosynthetic process	4.81E-03
70	GO:0009828: plant-type cell wall loosening	5.75E-03
71	GO:0016126: sterol biosynthetic process	6.50E-03
72	GO:0006468: protein phosphorylation	6.59E-03
73	GO:0048364: root development	8.34E-03
74	GO:0006811: ion transport	8.37E-03
75	GO:0010218: response to far red light	8.37E-03
76	GO:0010119: regulation of stomatal movement	8.65E-03
77	GO:0009734: auxin-activated signaling pathway	1.13E-02
78	GO:0009965: leaf morphogenesis	1.20E-02
79	GO:0009908: flower development	1.28E-02
80	GO:0009664: plant-type cell wall organization	1.29E-02
81	GO:0009585: red, far-red light phototransduction	1.36E-02
82	GO:0006351: transcription, DNA-templated	1.39E-02
83	GO:0009416: response to light stimulus	1.42E-02
84	GO:0009740: gibberellic acid mediated signaling pathway	1.67E-02
85	GO:0009624: response to nematode	1.75E-02
86	GO:0016310: phosphorylation	1.75E-02
87	GO:0009058: biosynthetic process	2.13E-02
88	GO:0009845: seed germination	2.16E-02
89	GO:0009790: embryo development	2.29E-02
90	GO:0006413: translational initiation	2.45E-02
91	GO:0010150: leaf senescence	2.57E-02
92	GO:0009651: response to salt stress	2.59E-02
93	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.79E-02
94	GO:0009739: response to gibberellin	2.79E-02
95	GO:0006355: regulation of transcription, DNA-templated	3.48E-02
96	GO:0006970: response to osmotic stress	3.70E-02
97	GO:0048366: leaf development	3.95E-02
98	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.19E-02
99	GO:0046777: protein autophosphorylation	4.30E-02
100	GO:0044550: secondary metabolite biosynthetic process	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
3	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
4	GO:0034639: L-amino acid efflux transmembrane transporter activity	0.00E+00
5	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
6	GO:0005227: calcium activated cation channel activity	4.74E-05
7	GO:0052631: sphingolipid delta-8 desaturase activity	4.74E-05
8	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	4.74E-05
9	GO:0008158: hedgehog receptor activity	4.74E-05
10	GO:0031409: pigment binding	1.02E-04
11	GO:0016630: protochlorophyllide reductase activity	1.17E-04
12	GO:0008728: GTP diphosphokinase activity	1.17E-04
13	GO:0004180: carboxypeptidase activity	2.00E-04
14	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.00E-04
15	GO:0016805: dipeptidase activity	2.00E-04
16	GO:0004845: uracil phosphoribosyltransferase activity	3.94E-04
17	GO:0004506: squalene monooxygenase activity	3.94E-04
18	GO:0004930: G-protein coupled receptor activity	3.94E-04
19	GO:0070628: proteasome binding	3.94E-04
20	GO:0016168: chlorophyll binding	4.56E-04
21	GO:0051538: 3 iron, 4 sulfur cluster binding	5.00E-04
22	GO:0004605: phosphatidate cytidylyltransferase activity	6.13E-04
23	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.13E-04
24	GO:0031593: polyubiquitin binding	6.13E-04
25	GO:0005261: cation channel activity	7.31E-04
26	GO:0004849: uridine kinase activity	7.31E-04
27	GO:0015171: amino acid transmembrane transporter activity	1.31E-03
28	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.55E-03
29	GO:0004672: protein kinase activity	1.84E-03
30	GO:0004022: alcohol dehydrogenase (NAD) activity	2.03E-03
31	GO:0005315: inorganic phosphate transmembrane transporter activity	2.03E-03
32	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.13E-03
33	GO:0004190: aspartic-type endopeptidase activity	2.38E-03
34	GO:0005217: intracellular ligand-gated ion channel activity	2.38E-03
35	GO:0004970: ionotropic glutamate receptor activity	2.38E-03
36	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.66E-03
37	GO:0043130: ubiquitin binding	2.74E-03
38	GO:0005216: ion channel activity	2.93E-03
39	GO:0008514: organic anion transmembrane transporter activity	3.73E-03
40	GO:0019901: protein kinase binding	4.81E-03
41	GO:0005506: iron ion binding	5.49E-03
42	GO:0003684: damaged DNA binding	5.75E-03
43	GO:0005524: ATP binding	6.02E-03
44	GO:0003677: DNA binding	7.49E-03
45	GO:0016301: kinase activity	8.34E-03
46	GO:0051537: 2 iron, 2 sulfur cluster binding	1.16E-02
47	GO:0015293: symporter activity	1.20E-02
48	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.31E-02
49	GO:0046872: metal ion binding	1.41E-02
50	GO:0003777: microtubule motor activity	1.46E-02
51	GO:0016758: transferase activity, transferring hexosyl groups	2.01E-02
52	GO:0015144: carbohydrate transmembrane transporter activity	2.33E-02
53	GO:0005525: GTP binding	2.34E-02
54	GO:0005351: sugar:proton symporter activity	2.53E-02
55	GO:0008017: microtubule binding	2.66E-02
56	GO:0003743: translation initiation factor activity	2.88E-02
57	GO:0005515: protein binding	2.94E-02
58	GO:0008168: methyltransferase activity	3.42E-02
59	GO:0000287: magnesium ion binding	3.47E-02
60	GO:0016491: oxidoreductase activity	3.79E-02
61	GO:0050660: flavin adenine dinucleotide binding	3.90E-02
62	GO:0008233: peptidase activity	4.04E-02
63	GO:0004497: monooxygenase activity	4.09E-02
64	GO:0004674: protein serine/threonine kinase activity	4.17E-02
65	GO:0020037: heme binding	4.53E-02
66	GO:0004871: signal transducer activity	4.81E-02
67	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	2.26E-07
3	GO:0009535: chloroplast thylakoid membrane	1.82E-05
4	GO:0009507: chloroplast	3.39E-05
5	GO:0009783: photosystem II antenna complex	4.74E-05
6	GO:0009941: chloroplast envelope	1.46E-04
7	GO:0010287: plastoglobule	1.82E-04
8	GO:0009522: photosystem I	2.59E-04
9	GO:0030660: Golgi-associated vesicle membrane	3.94E-04
10	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	3.94E-04
11	GO:0009579: thylakoid	4.69E-04
12	GO:0016021: integral component of membrane	6.23E-04
13	GO:0016020: membrane	6.33E-04
14	GO:0009538: photosystem I reaction center	9.81E-04
15	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	9.81E-04
16	GO:0009706: chloroplast inner membrane	1.66E-03
17	GO:0005765: lysosomal membrane	1.70E-03
18	GO:0042651: thylakoid membrane	2.93E-03
19	GO:0005871: kinesin complex	3.93E-03
20	GO:0009523: photosystem II	4.81E-03
21	GO:0009707: chloroplast outer membrane	7.81E-03
22	GO:0005886: plasma membrane	8.18E-03
23	GO:0005789: endoplasmic reticulum membrane	9.59E-03
24	GO:0031966: mitochondrial membrane	1.29E-02
25	GO:0010008: endosome membrane	1.57E-02
26	GO:0009570: chloroplast stroma	1.78E-02
27	GO:0005768: endosome	2.60E-02
28	GO:0005874: microtubule	4.00E-02