Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010378: temperature compensation of the circadian clock0.00E+00
2GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
3GO:0009768: photosynthesis, light harvesting in photosystem I1.01E-15
4GO:0018298: protein-chromophore linkage4.40E-11
5GO:0015979: photosynthesis3.80E-09
6GO:0010218: response to far red light6.03E-09
7GO:0009769: photosynthesis, light harvesting in photosystem II4.50E-08
8GO:0009645: response to low light intensity stimulus4.50E-08
9GO:0010114: response to red light1.15E-06
10GO:0009644: response to high light intensity1.36E-06
11GO:0007623: circadian rhythm1.51E-05
12GO:0009409: response to cold2.98E-05
13GO:0009637: response to blue light3.03E-05
14GO:0034472: snRNA 3'-end processing4.31E-05
15GO:0010496: intercellular transport4.31E-05
16GO:0015812: gamma-aminobutyric acid transport4.31E-05
17GO:0032958: inositol phosphate biosynthetic process4.31E-05
18GO:0090057: root radial pattern formation1.07E-04
19GO:0051170: nuclear import1.07E-04
20GO:0048511: rhythmic process1.24E-04
21GO:0010017: red or far-red light signaling pathway1.37E-04
22GO:0006598: polyamine catabolic process1.84E-04
23GO:0006020: inositol metabolic process2.70E-04
24GO:0010601: positive regulation of auxin biosynthetic process2.70E-04
25GO:0009416: response to light stimulus2.92E-04
26GO:0009765: photosynthesis, light harvesting3.64E-04
27GO:0010600: regulation of auxin biosynthetic process3.64E-04
28GO:0030104: water homeostasis3.64E-04
29GO:0015995: chlorophyll biosynthetic process4.50E-04
30GO:0000380: alternative mRNA splicing, via spliceosome4.63E-04
31GO:0048578: positive regulation of long-day photoperiodism, flowering4.63E-04
32GO:0006351: transcription, DNA-templated4.93E-04
33GO:0000160: phosphorelay signal transduction system5.22E-04
34GO:0009635: response to herbicide5.67E-04
35GO:0010119: regulation of stomatal movement5.72E-04
36GO:0080167: response to karrikin5.97E-04
37GO:0006355: regulation of transcription, DNA-templated6.22E-04
38GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.76E-04
39GO:0009861: jasmonic acid and ethylene-dependent systemic resistance6.76E-04
40GO:0010161: red light signaling pathway7.90E-04
41GO:1900056: negative regulation of leaf senescence7.90E-04
42GO:0048437: floral organ development7.90E-04
43GO:0010038: response to metal ion7.90E-04
44GO:0009414: response to water deprivation8.33E-04
45GO:0010928: regulation of auxin mediated signaling pathway9.08E-04
46GO:0009704: de-etiolation9.08E-04
47GO:0032508: DNA duplex unwinding9.08E-04
48GO:0010099: regulation of photomorphogenesis1.03E-03
49GO:0009827: plant-type cell wall modification1.03E-03
50GO:0009585: red, far-red light phototransduction1.06E-03
51GO:0090333: regulation of stomatal closure1.16E-03
52GO:0048354: mucilage biosynthetic process involved in seed coat development1.29E-03
53GO:0010380: regulation of chlorophyll biosynthetic process1.29E-03
54GO:0009641: shade avoidance1.43E-03
55GO:0010162: seed dormancy process1.43E-03
56GO:0009735: response to cytokinin1.76E-03
57GO:0009718: anthocyanin-containing compound biosynthetic process1.87E-03
58GO:0009738: abscisic acid-activated signaling pathway1.89E-03
59GO:0009266: response to temperature stimulus2.03E-03
60GO:0045893: positive regulation of transcription, DNA-templated2.34E-03
61GO:0006406: mRNA export from nucleus2.52E-03
62GO:0055085: transmembrane transport2.66E-03
63GO:0009737: response to abscisic acid2.69E-03
64GO:0009269: response to desiccation2.88E-03
65GO:0003333: amino acid transmembrane transport2.88E-03
66GO:0071215: cellular response to abscisic acid stimulus3.24E-03
67GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.63E-03
68GO:0010501: RNA secondary structure unwinding3.82E-03
69GO:0009658: chloroplast organization3.88E-03
70GO:0006970: response to osmotic stress4.18E-03
71GO:0006814: sodium ion transport4.23E-03
72GO:0042752: regulation of circadian rhythm4.23E-03
73GO:0009556: microsporogenesis4.43E-03
74GO:1901657: glycosyl compound metabolic process5.07E-03
75GO:0045892: negative regulation of transcription, DNA-templated5.84E-03
76GO:0016126: sterol biosynthetic process5.98E-03
77GO:0009788: negative regulation of abscisic acid-activated signaling pathway6.21E-03
78GO:0010029: regulation of seed germination6.21E-03
79GO:0009817: defense response to fungus, incompatible interaction7.19E-03
80GO:0010043: response to zinc ion7.95E-03
81GO:0009910: negative regulation of flower development7.95E-03
82GO:0009631: cold acclimation7.95E-03
83GO:0005975: carbohydrate metabolic process8.14E-03
84GO:0045087: innate immune response8.47E-03
85GO:0006839: mitochondrial transport9.28E-03
86GO:0042542: response to hydrogen peroxide9.83E-03
87GO:0051707: response to other organism1.01E-02
88GO:0009640: photomorphogenesis1.01E-02
89GO:0009908: flower development1.14E-02
90GO:0006812: cation transport1.19E-02
91GO:0035556: intracellular signal transduction1.33E-02
92GO:0009553: embryo sac development1.57E-02
93GO:0009624: response to nematode1.60E-02
94GO:0009651: response to salt stress2.22E-02
95GO:0010228: vegetative to reproductive phase transition of meristem2.44E-02
96GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.56E-02
97GO:0009739: response to gibberellin2.56E-02
98GO:0009826: unidimensional cell growth3.14E-02
99GO:0009723: response to ethylene3.58E-02
100GO:0010200: response to chitin3.85E-02
101GO:0046686: response to cadmium ion3.97E-02
102GO:0044550: secondary metabolite biosynthetic process3.99E-02
103GO:0016042: lipid catabolic process4.85E-02
104GO:0006629: lipid metabolic process4.95E-02
RankGO TermAdjusted P value
1GO:0047668: amygdalin beta-glucosidase activity0.00E+00
2GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
3GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
4GO:0004567: beta-mannosidase activity0.00E+00
5GO:0080082: esculin beta-glucosidase activity0.00E+00
6GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
7GO:0031409: pigment binding4.23E-16
8GO:0016168: chlorophyll binding1.52E-13
9GO:0033857: diphosphoinositol-pentakisphosphate kinase activity4.31E-05
10GO:0000829: inositol heptakisphosphate kinase activity4.31E-05
11GO:0080079: cellobiose glucosidase activity4.31E-05
12GO:0000828: inositol hexakisphosphate kinase activity4.31E-05
13GO:0015185: gamma-aminobutyric acid transmembrane transporter activity4.31E-05
14GO:0004565: beta-galactosidase activity5.98E-05
15GO:0016630: protochlorophyllide reductase activity1.07E-04
16GO:0015180: L-alanine transmembrane transporter activity1.07E-04
17GO:0046592: polyamine oxidase activity1.84E-04
18GO:0005515: protein binding1.98E-04
19GO:0015189: L-lysine transmembrane transporter activity2.70E-04
20GO:0015181: arginine transmembrane transporter activity2.70E-04
21GO:0000156: phosphorelay response regulator activity3.02E-04
22GO:0005313: L-glutamate transmembrane transporter activity3.64E-04
23GO:0004506: squalene monooxygenase activity3.64E-04
24GO:0005253: anion channel activity3.64E-04
25GO:0005247: voltage-gated chloride channel activity5.67E-04
26GO:0004629: phospholipase C activity5.67E-04
27GO:0015562: efflux transmembrane transporter activity5.67E-04
28GO:0004435: phosphatidylinositol phospholipase C activity6.76E-04
29GO:0000989: transcription factor activity, transcription factor binding1.16E-03
30GO:0046872: metal ion binding1.30E-03
31GO:0047372: acylglycerol lipase activity1.57E-03
32GO:0005315: inorganic phosphate transmembrane transporter activity1.87E-03
33GO:0008131: primary amine oxidase activity2.03E-03
34GO:0008324: cation transmembrane transporter activity2.70E-03
35GO:0008514: organic anion transmembrane transporter activity3.43E-03
36GO:0003677: DNA binding5.41E-03
37GO:0102483: scopolin beta-glucosidase activity6.69E-03
38GO:0003697: single-stranded DNA binding8.47E-03
39GO:0008422: beta-glucosidase activity9.01E-03
40GO:0003700: transcription factor activity, sequence-specific DNA binding9.77E-03
41GO:0015293: symporter activity1.10E-02
42GO:0005198: structural molecule activity1.10E-02
43GO:0003690: double-stranded DNA binding1.28E-02
44GO:0015171: amino acid transmembrane transporter activity1.34E-02
45GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.91E-02
46GO:0015144: carbohydrate transmembrane transporter activity2.13E-02
47GO:0015297: antiporter activity2.29E-02
48GO:0005351: sugar:proton symporter activity2.32E-02
49GO:0044212: transcription regulatory region DNA binding2.56E-02
50GO:0050660: flavin adenine dinucleotide binding3.58E-02
51GO:0008233: peptidase activity3.71E-02
52GO:0043565: sequence-specific DNA binding3.76E-02
53GO:0004497: monooxygenase activity3.76E-02
54GO:0061630: ubiquitin protein ligase activity3.89E-02
55GO:0004871: signal transducer activity4.41E-02
56GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.51E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex9.51E-14
2GO:0009522: photosystem I3.13E-12
3GO:0010287: plastoglobule5.26E-11
4GO:0009534: chloroplast thylakoid1.99E-10
5GO:0009523: photosystem II6.10E-10
6GO:0009579: thylakoid5.57E-09
7GO:0009535: chloroplast thylakoid membrane6.83E-08
8GO:0009941: chloroplast envelope1.30E-07
9GO:0042651: thylakoid membrane1.12E-04
10GO:0032586: protein storage vacuole membrane3.64E-04
11GO:0009517: PSII associated light-harvesting complex II3.64E-04
12GO:0034707: chloride channel complex5.67E-04
13GO:0009507: chloroplast9.19E-04
14GO:0031966: mitochondrial membrane9.88E-04
15GO:0000326: protein storage vacuole1.03E-03
16GO:0010494: cytoplasmic stress granule1.16E-03
17GO:0005938: cell cortex1.87E-03
18GO:0016020: membrane3.43E-03
19GO:0000932: P-body5.98E-03
20GO:0009707: chloroplast outer membrane7.19E-03
21GO:0016021: integral component of membrane7.79E-03
22GO:0016607: nuclear speck1.44E-02
23GO:0005777: peroxisome1.45E-02
24GO:0005654: nucleoplasm1.84E-02
25GO:0005623: cell1.91E-02
26GO:0005802: trans-Golgi network2.02E-02
27GO:0005622: intracellular2.24E-02
28GO:0048046: apoplast2.46E-02
29GO:0005618: cell wall2.74E-02
30GO:0009505: plant-type cell wall3.20E-02
31GO:0005743: mitochondrial inner membrane4.71E-02
Gene type



Gene DE type