co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G26910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0015995: chlorophyll biosynthetic process	6.20E-08
5	GO:0009913: epidermal cell differentiation	1.09E-06
6	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.24E-05
7	GO:0015979: photosynthesis	1.17E-04
8	GO:0009735: response to cytokinin	1.23E-04
9	GO:1901259: chloroplast rRNA processing	1.32E-04
10	GO:0010196: nonphotochemical quenching	1.74E-04
11	GO:0090548: response to nitrate starvation	2.43E-04
12	GO:0034337: RNA folding	2.43E-04
13	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.43E-04
14	GO:0071588: hydrogen peroxide mediated signaling pathway	2.43E-04
15	GO:1902025: nitrate import	2.43E-04
16	GO:0080051: cutin transport	2.43E-04
17	GO:0032544: plastid translation	2.74E-04
18	GO:0046856: phosphatidylinositol dephosphorylation	5.33E-04
19	GO:0009773: photosynthetic electron transport in photosystem I	5.33E-04
20	GO:0001736: establishment of planar polarity	5.39E-04
21	GO:0015908: fatty acid transport	5.39E-04
22	GO:0006898: receptor-mediated endocytosis	5.39E-04
23	GO:0043255: regulation of carbohydrate biosynthetic process	5.39E-04
24	GO:0010541: acropetal auxin transport	5.39E-04
25	GO:0016024: CDP-diacylglycerol biosynthetic process	6.09E-04
26	GO:0010167: response to nitrate	8.68E-04
27	GO:0046168: glycerol-3-phosphate catabolic process	8.75E-04
28	GO:0006013: mannose metabolic process	8.75E-04
29	GO:0010160: formation of animal organ boundary	8.75E-04
30	GO:0090391: granum assembly	8.75E-04
31	GO:0006518: peptide metabolic process	8.75E-04
32	GO:0016045: detection of bacterium	8.75E-04
33	GO:0010359: regulation of anion channel activity	8.75E-04
34	GO:0045490: pectin catabolic process	9.21E-04
35	GO:0016042: lipid catabolic process	9.68E-04
36	GO:0009413: response to flooding	1.25E-03
37	GO:0010371: regulation of gibberellin biosynthetic process	1.25E-03
38	GO:0051513: regulation of monopolar cell growth	1.25E-03
39	GO:0010239: chloroplast mRNA processing	1.25E-03
40	GO:0080170: hydrogen peroxide transmembrane transport	1.25E-03
41	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.25E-03
42	GO:0006072: glycerol-3-phosphate metabolic process	1.25E-03
43	GO:0009650: UV protection	1.25E-03
44	GO:1901332: negative regulation of lateral root development	1.25E-03
45	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.53E-03
46	GO:0010222: stem vascular tissue pattern formation	1.67E-03
47	GO:0045727: positive regulation of translation	1.67E-03
48	GO:0015994: chlorophyll metabolic process	1.67E-03
49	GO:0030104: water homeostasis	1.67E-03
50	GO:0034220: ion transmembrane transport	1.94E-03
51	GO:0009958: positive gravitropism	2.09E-03
52	GO:0006564: L-serine biosynthetic process	2.13E-03
53	GO:0048497: maintenance of floral organ identity	2.13E-03
54	GO:0048825: cotyledon development	2.40E-03
55	GO:0009624: response to nematode	2.51E-03
56	GO:0000302: response to reactive oxygen species	2.57E-03
57	GO:0006751: glutathione catabolic process	2.62E-03
58	GO:0006655: phosphatidylglycerol biosynthetic process	2.62E-03
59	GO:0060918: auxin transport	2.62E-03
60	GO:0010337: regulation of salicylic acid metabolic process	2.62E-03
61	GO:0009828: plant-type cell wall loosening	3.11E-03
62	GO:0010019: chloroplast-nucleus signaling pathway	3.15E-03
63	GO:0010027: thylakoid membrane organization	3.71E-03
64	GO:0009772: photosynthetic electron transport in photosystem II	3.72E-03
65	GO:1900056: negative regulation of leaf senescence	3.72E-03
66	GO:1900057: positive regulation of leaf senescence	3.72E-03
67	GO:0010444: guard mother cell differentiation	3.72E-03
68	GO:0042744: hydrogen peroxide catabolic process	3.94E-03
69	GO:0031540: regulation of anthocyanin biosynthetic process	4.31E-03
70	GO:0055075: potassium ion homeostasis	4.31E-03
71	GO:0048564: photosystem I assembly	4.31E-03
72	GO:0045292: mRNA cis splicing, via spliceosome	4.31E-03
73	GO:0008610: lipid biosynthetic process	4.31E-03
74	GO:0006353: DNA-templated transcription, termination	4.31E-03
75	GO:0006605: protein targeting	4.31E-03
76	GO:0010311: lateral root formation	5.08E-03
77	GO:0010206: photosystem II repair	5.59E-03
78	GO:0034765: regulation of ion transmembrane transport	5.59E-03
79	GO:0000373: Group II intron splicing	5.59E-03
80	GO:0010205: photoinhibition	6.27E-03
81	GO:0009638: phototropism	6.27E-03
82	GO:0034599: cellular response to oxidative stress	6.41E-03
83	GO:0048829: root cap development	6.99E-03
84	GO:0006949: syncytium formation	6.99E-03
85	GO:0006032: chitin catabolic process	6.99E-03
86	GO:0009734: auxin-activated signaling pathway	7.52E-03
87	GO:0048765: root hair cell differentiation	7.73E-03
88	GO:0000038: very long-chain fatty acid metabolic process	7.73E-03
89	GO:0052544: defense response by callose deposition in cell wall	7.73E-03
90	GO:0008285: negative regulation of cell proliferation	7.73E-03
91	GO:0009926: auxin polar transport	7.90E-03
92	GO:0009640: photomorphogenesis	7.90E-03
93	GO:0008361: regulation of cell size	8.49E-03
94	GO:0015706: nitrate transport	8.49E-03
95	GO:0010229: inflorescence development	9.29E-03
96	GO:0050826: response to freezing	9.29E-03
97	GO:0009718: anthocyanin-containing compound biosynthetic process	9.29E-03
98	GO:0010588: cotyledon vascular tissue pattern formation	9.29E-03
99	GO:0010102: lateral root morphogenesis	9.29E-03
100	GO:0009785: blue light signaling pathway	9.29E-03
101	GO:0010628: positive regulation of gene expression	9.29E-03
102	GO:0009664: plant-type cell wall organization	9.93E-03
103	GO:0010540: basipetal auxin transport	1.01E-02
104	GO:0048467: gynoecium development	1.01E-02
105	GO:0010143: cutin biosynthetic process	1.01E-02
106	GO:0009416: response to light stimulus	1.07E-02
107	GO:0009809: lignin biosynthetic process	1.07E-02
108	GO:0006364: rRNA processing	1.07E-02
109	GO:0010053: root epidermal cell differentiation	1.10E-02
110	GO:0009825: multidimensional cell growth	1.10E-02
111	GO:0071732: cellular response to nitric oxide	1.10E-02
112	GO:0010030: positive regulation of seed germination	1.10E-02
113	GO:0080167: response to karrikin	1.15E-02
114	GO:0009733: response to auxin	1.17E-02
115	GO:0006833: water transport	1.18E-02
116	GO:0010025: wax biosynthetic process	1.18E-02
117	GO:0006636: unsaturated fatty acid biosynthetic process	1.18E-02
118	GO:0042023: DNA endoreduplication	1.18E-02
119	GO:2000377: regulation of reactive oxygen species metabolic process	1.27E-02
120	GO:0051017: actin filament bundle assembly	1.27E-02
121	GO:0010073: meristem maintenance	1.37E-02
122	GO:0019953: sexual reproduction	1.37E-02
123	GO:0007017: microtubule-based process	1.37E-02
124	GO:0016998: cell wall macromolecule catabolic process	1.46E-02
125	GO:0003333: amino acid transmembrane transport	1.46E-02
126	GO:0010227: floral organ abscission	1.66E-02
127	GO:0009411: response to UV	1.66E-02
128	GO:0071369: cellular response to ethylene stimulus	1.66E-02
129	GO:0048443: stamen development	1.76E-02
130	GO:0009306: protein secretion	1.76E-02
131	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.86E-02
132	GO:0005975: carbohydrate metabolic process	1.96E-02
133	GO:0042631: cellular response to water deprivation	1.97E-02
134	GO:0042335: cuticle development	1.97E-02
135	GO:0042391: regulation of membrane potential	1.97E-02
136	GO:0080022: primary root development	1.97E-02
137	GO:0071472: cellular response to salt stress	2.07E-02
138	GO:0010305: leaf vascular tissue pattern formation	2.07E-02
139	GO:0009845: seed germination	2.07E-02
140	GO:0008152: metabolic process	2.14E-02
141	GO:0015986: ATP synthesis coupled proton transport	2.18E-02
142	GO:0006633: fatty acid biosynthetic process	2.40E-02
143	GO:0016032: viral process	2.52E-02
144	GO:0071281: cellular response to iron ion	2.64E-02
145	GO:0009451: RNA modification	2.70E-02
146	GO:0010228: vegetative to reproductive phase transition of meristem	2.76E-02
147	GO:0010252: auxin homeostasis	2.76E-02
148	GO:0009639: response to red or far red light	2.76E-02
149	GO:0006468: protein phosphorylation	2.81E-02
150	GO:0071805: potassium ion transmembrane transport	2.88E-02
151	GO:0009739: response to gibberellin	2.95E-02
152	GO:0007166: cell surface receptor signaling pathway	3.01E-02
153	GO:0051607: defense response to virus	3.01E-02
154	GO:0009627: systemic acquired resistance	3.39E-02
155	GO:0030244: cellulose biosynthetic process	3.78E-02
156	GO:0009826: unidimensional cell growth	3.92E-02
157	GO:0010218: response to far red light	4.05E-02
158	GO:0007568: aging	4.19E-02
159	GO:0009631: cold acclimation	4.19E-02
160	GO:0048527: lateral root development	4.19E-02
161	GO:0006865: amino acid transport	4.33E-02
162	GO:0009637: response to blue light	4.48E-02
163	GO:0016051: carbohydrate biosynthetic process	4.48E-02
164	GO:0030001: metal ion transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0047661: amino-acid racemase activity	0.00E+00
5	GO:0016851: magnesium chelatase activity	8.40E-08
6	GO:0005528: FK506 binding	7.01E-05
7	GO:0004130: cytochrome-c peroxidase activity	9.62E-05
8	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	9.62E-05
9	GO:0052689: carboxylic ester hydrolase activity	1.08E-04
10	GO:0030570: pectate lyase activity	1.23E-04
11	GO:0045485: omega-6 fatty acid desaturase activity	2.43E-04
12	GO:0015245: fatty acid transporter activity	2.43E-04
13	GO:0016788: hydrolase activity, acting on ester bonds	3.58E-04
14	GO:0016597: amino acid binding	3.95E-04
15	GO:0016746: transferase activity, transferring acyl groups	4.18E-04
16	GO:0047746: chlorophyllase activity	5.39E-04
17	GO:0003839: gamma-glutamylcyclotransferase activity	5.39E-04
18	GO:0004617: phosphoglycerate dehydrogenase activity	5.39E-04
19	GO:0016630: protochlorophyllide reductase activity	5.39E-04
20	GO:0019843: rRNA binding	5.66E-04
21	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.09E-04
22	GO:0016829: lyase activity	6.38E-04
23	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.75E-04
24	GO:0001872: (1->3)-beta-D-glucan binding	1.25E-03
25	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.25E-03
26	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.34E-03
27	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.67E-03
28	GO:0010011: auxin binding	1.67E-03
29	GO:0010328: auxin influx transmembrane transporter activity	1.67E-03
30	GO:0042277: peptide binding	1.67E-03
31	GO:0003959: NADPH dehydrogenase activity	2.13E-03
32	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.62E-03
33	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.62E-03
34	GO:0042578: phosphoric ester hydrolase activity	2.62E-03
35	GO:0016688: L-ascorbate peroxidase activity	2.62E-03
36	GO:0016791: phosphatase activity	3.11E-03
37	GO:0004559: alpha-mannosidase activity	3.15E-03
38	GO:0005242: inward rectifier potassium channel activity	3.15E-03
39	GO:0016832: aldehyde-lyase activity	3.15E-03
40	GO:0015250: water channel activity	3.71E-03
41	GO:0005515: protein binding	3.85E-03
42	GO:0016787: hydrolase activity	4.31E-03
43	GO:0052747: sinapyl alcohol dehydrogenase activity	4.31E-03
44	GO:0043022: ribosome binding	4.31E-03
45	GO:0030247: polysaccharide binding	4.37E-03
46	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.60E-03
47	GO:0015112: nitrate transmembrane transporter activity	6.27E-03
48	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.82E-03
49	GO:0004568: chitinase activity	6.99E-03
50	GO:0015020: glucuronosyltransferase activity	6.99E-03
51	GO:0047372: acylglycerol lipase activity	7.73E-03
52	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.49E-03
53	GO:0015293: symporter activity	8.88E-03
54	GO:0031072: heat shock protein binding	9.29E-03
55	GO:0004565: beta-galactosidase activity	9.29E-03
56	GO:0010329: auxin efflux transmembrane transporter activity	9.29E-03
57	GO:0051287: NAD binding	9.58E-03
58	GO:0008266: poly(U) RNA binding	1.01E-02
59	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.18E-02
60	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.18E-02
61	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.18E-02
62	GO:0004707: MAP kinase activity	1.46E-02
63	GO:0004176: ATP-dependent peptidase activity	1.46E-02
64	GO:0003756: protein disulfide isomerase activity	1.76E-02
65	GO:0005249: voltage-gated potassium channel activity	1.97E-02
66	GO:0030551: cyclic nucleotide binding	1.97E-02
67	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.07E-02
68	GO:0050662: coenzyme binding	2.18E-02
69	GO:0046910: pectinesterase inhibitor activity	2.46E-02
70	GO:0004518: nuclease activity	2.52E-02
71	GO:0051015: actin filament binding	2.64E-02
72	GO:0008289: lipid binding	2.86E-02
73	GO:0005200: structural constituent of cytoskeleton	2.88E-02
74	GO:0042802: identical protein binding	3.35E-02
75	GO:0008375: acetylglucosaminyltransferase activity	3.39E-02
76	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.78E-02
77	GO:0000166: nucleotide binding	3.87E-02
78	GO:0004222: metalloendopeptidase activity	4.05E-02
79	GO:0004601: peroxidase activity	4.07E-02
80	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.19E-02
81	GO:0003746: translation elongation factor activity	4.48E-02
82	GO:0016491: oxidoreductase activity	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	1.28E-13
2	GO:0009507: chloroplast	1.05E-08
3	GO:0010007: magnesium chelatase complex	1.73E-08
4	GO:0009535: chloroplast thylakoid membrane	1.77E-08
5	GO:0009543: chloroplast thylakoid lumen	3.52E-07
6	GO:0009941: chloroplast envelope	9.43E-06
7	GO:0005618: cell wall	1.89E-05
8	GO:0009579: thylakoid	4.56E-05
9	GO:0009570: chloroplast stroma	4.91E-05
10	GO:0031977: thylakoid lumen	1.16E-04
11	GO:0048046: apoplast	2.08E-04
12	GO:0043674: columella	2.43E-04
13	GO:0009515: granal stacked thylakoid	2.43E-04
14	GO:0005886: plasma membrane	6.44E-04
15	GO:0048188: Set1C/COMPASS complex	8.75E-04
16	GO:0009897: external side of plasma membrane	8.75E-04
17	GO:0015630: microtubule cytoskeleton	1.25E-03
18	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.25E-03
19	GO:0009505: plant-type cell wall	1.33E-03
20	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.62E-03
21	GO:0005576: extracellular region	2.67E-03
22	GO:0010287: plastoglobule	3.12E-03
23	GO:0016020: membrane	3.48E-03
24	GO:0009986: cell surface	3.72E-03
25	GO:0042807: central vacuole	3.72E-03
26	GO:0008180: COP9 signalosome	5.59E-03
27	GO:0032040: small-subunit processome	8.49E-03
28	GO:0030095: chloroplast photosystem II	1.01E-02
29	GO:0031969: chloroplast membrane	1.15E-02
30	GO:0009706: chloroplast inner membrane	1.52E-02
31	GO:0015629: actin cytoskeleton	1.66E-02
32	GO:0009523: photosystem II	2.29E-02
33	GO:0005887: integral component of plasma membrane	2.77E-02
34	GO:0010319: stromule	2.88E-02
35	GO:0005840: ribosome	3.28E-02
36	GO:0019005: SCF ubiquitin ligase complex	3.78E-02
37	GO:0000151: ubiquitin ligase complex	3.78E-02