co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G26540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:0061635: regulation of protein complex stability	0.00E+00
8	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
9	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
10	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
11	GO:0090042: tubulin deacetylation	0.00E+00
12	GO:0006412: translation	2.05E-09
13	GO:0042254: ribosome biogenesis	3.35E-09
14	GO:0015979: photosynthesis	1.67E-08
15	GO:0009658: chloroplast organization	5.22E-08
16	GO:0032544: plastid translation	1.15E-07
17	GO:0009773: photosynthetic electron transport in photosystem I	3.07E-05
18	GO:0010190: cytochrome b6f complex assembly	1.22E-04
19	GO:0042549: photosystem II stabilization	1.22E-04
20	GO:0061077: chaperone-mediated protein folding	1.29E-04
21	GO:0042372: phylloquinone biosynthetic process	1.67E-04
22	GO:0000413: protein peptidyl-prolyl isomerization	2.34E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	2.82E-04
24	GO:1904964: positive regulation of phytol biosynthetic process	2.82E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	2.82E-04
26	GO:0071482: cellular response to light stimulus	3.40E-04
27	GO:0009657: plastid organization	3.40E-04
28	GO:0010027: thylakoid membrane organization	5.58E-04
29	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.19E-04
30	GO:0010270: photosystem II oxygen evolving complex assembly	6.19E-04
31	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.19E-04
32	GO:0034755: iron ion transmembrane transport	6.19E-04
33	GO:0006415: translational termination	6.54E-04
34	GO:0043085: positive regulation of catalytic activity	6.54E-04
35	GO:0006094: gluconeogenesis	8.46E-04
36	GO:0009735: response to cytokinin	9.02E-04
37	GO:0010207: photosystem II assembly	9.50E-04
38	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.00E-03
39	GO:0006518: peptide metabolic process	1.00E-03
40	GO:0090506: axillary shoot meristem initiation	1.00E-03
41	GO:0006000: fructose metabolic process	1.00E-03
42	GO:0010581: regulation of starch biosynthetic process	1.00E-03
43	GO:0006954: inflammatory response	1.00E-03
44	GO:0016556: mRNA modification	1.44E-03
45	GO:2001141: regulation of RNA biosynthetic process	1.44E-03
46	GO:0009152: purine ribonucleotide biosynthetic process	1.44E-03
47	GO:0046653: tetrahydrofolate metabolic process	1.44E-03
48	GO:0051016: barbed-end actin filament capping	1.44E-03
49	GO:0010088: phloem development	1.44E-03
50	GO:0006457: protein folding	1.79E-03
51	GO:0015994: chlorophyll metabolic process	1.92E-03
52	GO:0042335: cuticle development	2.39E-03
53	GO:0006564: L-serine biosynthetic process	2.46E-03
54	GO:0010236: plastoquinone biosynthetic process	2.46E-03
55	GO:0045038: protein import into chloroplast thylakoid membrane	2.46E-03
56	GO:0031365: N-terminal protein amino acid modification	2.46E-03
57	GO:0080110: sporopollenin biosynthetic process	2.46E-03
58	GO:0006014: D-ribose metabolic process	3.03E-03
59	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.03E-03
60	GO:0016554: cytidine to uridine editing	3.03E-03
61	GO:0006828: manganese ion transport	3.03E-03
62	GO:0032973: amino acid export	3.03E-03
63	GO:0006458: 'de novo' protein folding	3.65E-03
64	GO:0009854: oxidative photosynthetic carbon pathway	3.65E-03
65	GO:0010019: chloroplast-nucleus signaling pathway	3.65E-03
66	GO:0010555: response to mannitol	3.65E-03
67	GO:0010067: procambium histogenesis	3.65E-03
68	GO:0042026: protein refolding	3.65E-03
69	GO:0009772: photosynthetic electron transport in photosystem II	4.30E-03
70	GO:0043090: amino acid import	4.30E-03
71	GO:0051693: actin filament capping	4.30E-03
72	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.30E-03
73	GO:0045454: cell redox homeostasis	4.50E-03
74	GO:0048564: photosystem I assembly	4.99E-03
75	GO:0009819: drought recovery	4.99E-03
76	GO:0009642: response to light intensity	4.99E-03
77	GO:0030091: protein repair	4.99E-03
78	GO:0009790: embryo development	5.33E-03
79	GO:0015995: chlorophyll biosynthetic process	5.40E-03
80	GO:0017004: cytochrome complex assembly	5.72E-03
81	GO:0006002: fructose 6-phosphate metabolic process	5.72E-03
82	GO:0019430: removal of superoxide radicals	5.72E-03
83	GO:0018298: protein-chromophore linkage	5.98E-03
84	GO:0000373: Group II intron splicing	6.48E-03
85	GO:0000902: cell morphogenesis	6.48E-03
86	GO:0006098: pentose-phosphate shunt	6.48E-03
87	GO:0080144: amino acid homeostasis	6.48E-03
88	GO:1900865: chloroplast RNA modification	7.28E-03
89	GO:0010380: regulation of chlorophyll biosynthetic process	7.28E-03
90	GO:0009637: response to blue light	7.59E-03
91	GO:0009853: photorespiration	7.59E-03
92	GO:0034599: cellular response to oxidative stress	7.94E-03
93	GO:0009073: aromatic amino acid family biosynthetic process	8.97E-03
94	GO:0006879: cellular iron ion homeostasis	8.97E-03
95	GO:0006352: DNA-templated transcription, initiation	8.97E-03
96	GO:0009750: response to fructose	8.97E-03
97	GO:0006816: calcium ion transport	8.97E-03
98	GO:0019684: photosynthesis, light reaction	8.97E-03
99	GO:0009089: lysine biosynthetic process via diaminopimelate	8.97E-03
100	GO:0006810: transport	9.19E-03
101	GO:0010114: response to red light	9.80E-03
102	GO:0005983: starch catabolic process	9.88E-03
103	GO:0045037: protein import into chloroplast stroma	9.88E-03
104	GO:0006006: glucose metabolic process	1.08E-02
105	GO:0030036: actin cytoskeleton organization	1.08E-02
106	GO:0005986: sucrose biosynthetic process	1.08E-02
107	GO:0019253: reductive pentose-phosphate cycle	1.18E-02
108	GO:0007015: actin filament organization	1.18E-02
109	GO:0010223: secondary shoot formation	1.18E-02
110	GO:0010143: cutin biosynthetic process	1.18E-02
111	GO:0010020: chloroplast fission	1.18E-02
112	GO:0006813: potassium ion transport	1.32E-02
113	GO:0006508: proteolysis	1.48E-02
114	GO:0019344: cysteine biosynthetic process	1.48E-02
115	GO:0000027: ribosomal large subunit assembly	1.48E-02
116	GO:0006096: glycolytic process	1.57E-02
117	GO:0009768: photosynthesis, light harvesting in photosystem I	1.59E-02
118	GO:0016575: histone deacetylation	1.59E-02
119	GO:0006418: tRNA aminoacylation for protein translation	1.59E-02
120	GO:0016226: iron-sulfur cluster assembly	1.81E-02
121	GO:0001944: vasculature development	1.93E-02
122	GO:0010089: xylem development	2.05E-02
123	GO:0010584: pollen exine formation	2.05E-02
124	GO:0006869: lipid transport	2.14E-02
125	GO:0016117: carotenoid biosynthetic process	2.17E-02
126	GO:0010087: phloem or xylem histogenesis	2.29E-02
127	GO:0006662: glycerol ether metabolic process	2.42E-02
128	GO:0055114: oxidation-reduction process	2.66E-02
129	GO:0019252: starch biosynthetic process	2.67E-02
130	GO:0042744: hydrogen peroxide catabolic process	2.70E-02
131	GO:0000302: response to reactive oxygen species	2.81E-02
132	GO:0006413: translational initiation	3.05E-02
133	GO:0071805: potassium ion transmembrane transport	3.36E-02
134	GO:0001666: response to hypoxia	3.65E-02
135	GO:0042128: nitrate assimilation	3.95E-02
136	GO:0042742: defense response to bacterium	4.17E-02
137	GO:0016311: dephosphorylation	4.25E-02
138	GO:0009817: defense response to fungus, incompatible interaction	4.41E-02
139	GO:0048481: plant ovule development	4.41E-02
140	GO:0010218: response to far red light	4.72E-02
141	GO:0009407: toxin catabolic process	4.72E-02
142	GO:0009631: cold acclimation	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0043014: alpha-tubulin binding	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
5	GO:0005048: signal sequence binding	0.00E+00
6	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
7	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
8	GO:0051721: protein phosphatase 2A binding	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0042903: tubulin deacetylase activity	0.00E+00
12	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
13	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
14	GO:0008887: glycerate kinase activity	0.00E+00
15	GO:0019843: rRNA binding	7.47E-14
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.55E-12
17	GO:0003735: structural constituent of ribosome	5.22E-11
18	GO:0005528: FK506 binding	6.29E-08
19	GO:0016149: translation release factor activity, codon specific	2.94E-05
20	GO:0051920: peroxiredoxin activity	1.67E-04
21	GO:0016209: antioxidant activity	2.76E-04
22	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.82E-04
23	GO:0005509: calcium ion binding	3.08E-04
24	GO:0003747: translation release factor activity	4.10E-04
25	GO:0008047: enzyme activator activity	5.67E-04
26	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.19E-04
27	GO:0047746: chlorophyllase activity	6.19E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	6.19E-04
29	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.19E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.19E-04
31	GO:0016630: protochlorophyllide reductase activity	6.19E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.19E-04
33	GO:0030267: glyoxylate reductase (NADP) activity	1.00E-03
34	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.00E-03
35	GO:0008864: formyltetrahydrofolate deformylase activity	1.00E-03
36	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.00E-03
37	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.00E-03
38	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.00E-03
39	GO:0050734: hydroxycinnamoyltransferase activity	1.00E-03
40	GO:0002161: aminoacyl-tRNA editing activity	1.00E-03
41	GO:0048487: beta-tubulin binding	1.44E-03
42	GO:0043023: ribosomal large subunit binding	1.44E-03
43	GO:0008097: 5S rRNA binding	1.44E-03
44	GO:0004659: prenyltransferase activity	1.92E-03
45	GO:0001053: plastid sigma factor activity	1.92E-03
46	GO:0004045: aminoacyl-tRNA hydrolase activity	1.92E-03
47	GO:0016987: sigma factor activity	1.92E-03
48	GO:1990137: plant seed peroxidase activity	1.92E-03
49	GO:0043495: protein anchor	1.92E-03
50	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.46E-03
51	GO:0003959: NADPH dehydrogenase activity	2.46E-03
52	GO:0016788: hydrolase activity, acting on ester bonds	2.54E-03
53	GO:0004791: thioredoxin-disulfide reductase activity	2.77E-03
54	GO:0016208: AMP binding	3.03E-03
55	GO:0016688: L-ascorbate peroxidase activity	3.03E-03
56	GO:0008200: ion channel inhibitor activity	3.03E-03
57	GO:0004332: fructose-bisphosphate aldolase activity	3.03E-03
58	GO:0004130: cytochrome-c peroxidase activity	3.03E-03
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.62E-03
60	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.65E-03
61	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.65E-03
62	GO:0004747: ribokinase activity	3.65E-03
63	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.65E-03
64	GO:0019899: enzyme binding	4.30E-03
65	GO:0008235: metalloexopeptidase activity	4.30E-03
66	GO:0016168: chlorophyll binding	4.85E-03
67	GO:0008865: fructokinase activity	4.99E-03
68	GO:0008312: 7S RNA binding	4.99E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	4.99E-03
70	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.72E-03
71	GO:0004222: metalloendopeptidase activity	6.60E-03
72	GO:0005384: manganese ion transmembrane transporter activity	7.28E-03
73	GO:0047617: acyl-CoA hydrolase activity	7.28E-03
74	GO:0005381: iron ion transmembrane transporter activity	7.28E-03
75	GO:0004177: aminopeptidase activity	8.97E-03
76	GO:0044183: protein binding involved in protein folding	8.97E-03
77	GO:0000049: tRNA binding	9.88E-03
78	GO:0051537: 2 iron, 2 sulfur cluster binding	1.06E-02
79	GO:0043621: protein self-association	1.06E-02
80	GO:0015095: magnesium ion transmembrane transporter activity	1.08E-02
81	GO:0031072: heat shock protein binding	1.08E-02
82	GO:0004601: peroxidase activity	1.15E-02
83	GO:0051287: NAD binding	1.19E-02
84	GO:0031409: pigment binding	1.38E-02
85	GO:0051536: iron-sulfur cluster binding	1.48E-02
86	GO:0004407: histone deacetylase activity	1.48E-02
87	GO:0015079: potassium ion transmembrane transporter activity	1.59E-02
88	GO:0008324: cation transmembrane transporter activity	1.59E-02
89	GO:0033612: receptor serine/threonine kinase binding	1.70E-02
90	GO:0052689: carboxylic ester hydrolase activity	1.72E-02
91	GO:0051082: unfolded protein binding	1.89E-02
92	GO:0022891: substrate-specific transmembrane transporter activity	1.93E-02
93	GO:0003723: RNA binding	2.12E-02
94	GO:0047134: protein-disulfide reductase activity	2.17E-02
95	GO:0004812: aminoacyl-tRNA ligase activity	2.17E-02
96	GO:0005102: receptor binding	2.17E-02
97	GO:0008080: N-acetyltransferase activity	2.42E-02
98	GO:0050662: coenzyme binding	2.54E-02
99	GO:0009055: electron carrier activity	2.70E-02
100	GO:0004519: endonuclease activity	2.75E-02
101	GO:0051015: actin filament binding	3.08E-02
102	GO:0008237: metallopeptidase activity	3.36E-02
103	GO:0016597: amino acid binding	3.50E-02
104	GO:0008289: lipid binding	3.73E-02
105	GO:0003743: translation initiation factor activity	3.81E-02
106	GO:0004721: phosphoprotein phosphatase activity	4.10E-02
107	GO:0042802: identical protein binding	4.14E-02
108	GO:0008236: serine-type peptidase activity	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	2.25E-71
3	GO:0009570: chloroplast stroma	1.51E-36
4	GO:0009535: chloroplast thylakoid membrane	8.96E-29
5	GO:0009941: chloroplast envelope	2.17E-28
6	GO:0009543: chloroplast thylakoid lumen	1.13E-23
7	GO:0009579: thylakoid	6.48E-18
8	GO:0031977: thylakoid lumen	1.67E-16
9	GO:0005840: ribosome	3.63E-12
10	GO:0009654: photosystem II oxygen evolving complex	1.29E-09
11	GO:0009534: chloroplast thylakoid	1.69E-09
12	GO:0019898: extrinsic component of membrane	1.65E-08
13	GO:0031969: chloroplast membrane	1.77E-06
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.36E-05
15	GO:0030095: chloroplast photosystem II	5.78E-05
16	GO:0080085: signal recognition particle, chloroplast targeting	6.19E-04
17	GO:0008290: F-actin capping protein complex	6.19E-04
18	GO:0000311: plastid large ribosomal subunit	7.47E-04
19	GO:0015934: large ribosomal subunit	9.36E-04
20	GO:0042651: thylakoid membrane	1.44E-03
21	GO:0009536: plastid	2.05E-03
22	GO:0009523: photosystem II	2.97E-03
23	GO:0009533: chloroplast stromal thylakoid	4.30E-03
24	GO:0030529: intracellular ribonucleoprotein complex	4.59E-03
25	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.72E-03
26	GO:0005811: lipid particle	5.72E-03
27	GO:0005884: actin filament	8.97E-03
28	GO:0046658: anchored component of plasma membrane	9.44E-03
29	GO:0000312: plastid small ribosomal subunit	1.18E-02
30	GO:0030076: light-harvesting complex	1.28E-02
31	GO:0005875: microtubule associated complex	1.38E-02
32	GO:0009532: plastid stroma	1.70E-02
33	GO:0009706: chloroplast inner membrane	1.89E-02
34	GO:0010287: plastoglobule	2.24E-02
35	GO:0009522: photosystem I	2.54E-02
36	GO:0016020: membrane	2.74E-02
37	GO:0031225: anchored component of membrane	2.86E-02
38	GO:0005778: peroxisomal membrane	3.36E-02
39	GO:0010319: stromule	3.36E-02